Calcium in PDB 7d4p: Structure of Human TRPC5 in Complex with Clemizole

The structure of Structure of Human TRPC5 in Complex with Clemizole also contains other interesting chemical elements:

Zinc	(Zn)	4 atoms
Chlorine	(Cl)	4 atoms

The binding sites of Calcium atom in the Structure of Human TRPC5 in Complex with Clemizole (pdb code 7d4p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Human TRPC5 in Complex with Clemizole, PDB code: 7d4p:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of Human TRPC5 in Complex with Clemizole


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human TRPC5 in Complex with Clemizole within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca806 b:102.0 occ:1.00 OD2 A:ASP439 2.6 104.0 1.0 OE1 A:GLU418 2.8 111.8 1.0 OD1 A:ASN436 2.8 105.8 1.0 OE1 A:GLU421 3.2 127.2 1.0 CD A:GLU418 3.5 113.8 1.0 OE2 A:GLU418 3.6 115.3 1.0 CG A:ASP439 3.8 99.4 1.0 NH2 A:ARG492 3.8 86.4 1.0 CG A:ASN436 4.0 109.5 1.0 CD A:GLU421 4.1 131.7 1.0 OE2 A:GLU421 4.2 128.4 1.0 C7 A:GX0801 4.3 102.5 1.0 CB A:ASP439 4.5 94.5 1.0 OD1 A:ASP439 4.7 98.5 1.0 N1 A:GX0801 4.8 107.2 1.0 C10 A:GX0801 4.8 98.3 1.0 CA A:ASN436 4.8 98.5 1.0 ND2 A:ASN436 4.9 114.7 1.0 CG A:GLU418 4.9 107.2 1.0 C6 A:GX0801 4.9 108.9 1.0 CB A:ASN436 5.0 104.1 1.0

Calcium binding site 2 out of 4 in the Structure of Human TRPC5 in Complex with Clemizole


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Human TRPC5 in Complex with Clemizole within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca806 b:102.0 occ:1.00 OD2 B:ASP439 2.6 104.0 1.0 OE1 B:GLU418 2.8 111.8 1.0 OD1 B:ASN436 2.8 105.8 1.0 OE1 B:GLU421 3.2 127.2 1.0 CD B:GLU418 3.5 113.8 1.0 OE2 B:GLU418 3.6 115.3 1.0 CG B:ASP439 3.8 99.4 1.0 NH2 B:ARG492 3.8 86.4 1.0 CG B:ASN436 4.0 109.5 1.0 CD B:GLU421 4.1 131.7 1.0 OE2 B:GLU421 4.2 128.4 1.0 C7 B:GX0801 4.3 102.5 1.0 CB B:ASP439 4.5 94.5 1.0 OD1 B:ASP439 4.7 98.5 1.0 N1 B:GX0801 4.8 107.2 1.0 C10 B:GX0801 4.8 98.3 1.0 CA B:ASN436 4.8 98.5 1.0 ND2 B:ASN436 4.9 114.7 1.0 CG B:GLU418 4.9 107.2 1.0 C6 B:GX0801 4.9 108.9 1.0 CB B:ASN436 5.0 104.1 1.0

Calcium binding site 3 out of 4 in the Structure of Human TRPC5 in Complex with Clemizole


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Human TRPC5 in Complex with Clemizole within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca806 b:102.0 occ:1.00 OD2 C:ASP439 2.6 104.0 1.0 OE1 C:GLU418 2.8 111.8 1.0 OD1 C:ASN436 2.8 105.8 1.0 OE1 C:GLU421 3.2 127.2 1.0 CD C:GLU418 3.5 113.8 1.0 OE2 C:GLU418 3.6 115.3 1.0 CG C:ASP439 3.8 99.4 1.0 NH2 C:ARG492 3.8 86.4 1.0 CG C:ASN436 4.0 109.5 1.0 CD C:GLU421 4.1 131.7 1.0 OE2 C:GLU421 4.2 128.4 1.0 C7 C:GX0801 4.3 102.5 1.0 CB C:ASP439 4.5 94.5 1.0 OD1 C:ASP439 4.7 98.5 1.0 N1 C:GX0801 4.8 107.2 1.0 C10 C:GX0801 4.8 98.3 1.0 CA C:ASN436 4.8 98.5 1.0 ND2 C:ASN436 4.9 114.7 1.0 CG C:GLU418 4.9 107.2 1.0 C6 C:GX0801 4.9 108.9 1.0 CB C:ASN436 5.0 104.1 1.0

Calcium binding site 4 out of 4 in the Structure of Human TRPC5 in Complex with Clemizole


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Human TRPC5 in Complex with Clemizole within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca806 b:102.0 occ:1.00 OD2 D:ASP439 2.6 104.0 1.0 OE1 D:GLU418 2.8 111.8 1.0 OD1 D:ASN436 2.8 105.8 1.0 OE1 D:GLU421 3.2 127.2 1.0 CD D:GLU418 3.5 113.8 1.0 OE2 D:GLU418 3.6 115.3 1.0 CG D:ASP439 3.8 99.4 1.0 NH2 D:ARG492 3.8 86.4 1.0 CG D:ASN436 4.0 109.5 1.0 CD D:GLU421 4.1 131.7 1.0 OE2 D:GLU421 4.2 128.4 1.0 C7 D:GX0801 4.3 102.5 1.0 CB D:ASP439 4.5 94.5 1.0 OD1 D:ASP439 4.7 98.5 1.0 N1 D:GX0801 4.8 107.2 1.0 C10 D:GX0801 4.8 98.3 1.0 CA D:ASN436 4.8 98.5 1.0 ND2 D:ASN436 4.9 114.7 1.0 C6 D:GX0801 4.9 108.9 1.0 CG D:GLU418 4.9 107.2 1.0 CB D:ASN436 5.0 104.1 1.0

L.Chen, K.Song, M.Wei, W.Guo. Structure of Human TRPC5 in Complex with Clemizole To Be Published.