Calcium in PDB 7dxi: Structure of Drosophila Melanogaster Glcnac-1-Phosphotransferase

The binding sites of Calcium atom in the Structure of Drosophila Melanogaster Glcnac-1-Phosphotransferase (pdb code 7dxi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Drosophila Melanogaster Glcnac-1-Phosphotransferase, PDB code: 7dxi:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Drosophila Melanogaster Glcnac-1-Phosphotransferase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Drosophila Melanogaster Glcnac-1-Phosphotransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca701 b:62.8 occ:1.00 CB A:ASP439 2.2 62.6 1.0 O A:THR443 2.2 66.5 1.0 OG1 A:THR443 2.5 66.5 1.0 OD2 A:ASP439 2.5 62.6 1.0 OE2 A:GLU448 2.6 52.4 1.0 OD2 A:ASP437 2.7 55.8 1.0 CG A:ASP439 2.8 62.6 1.0 C A:THR443 3.2 66.5 1.0 CB A:ASP437 3.2 55.8 1.0 CD A:GLU448 3.3 52.4 1.0 CG A:ASP437 3.4 55.8 1.0 CA A:ASP439 3.7 62.6 1.0 CB A:THR443 3.7 66.5 1.0 N A:ASP439 3.9 62.6 1.0 CA A:THR443 3.9 66.5 1.0 CG A:GLU448 3.9 52.4 1.0 OE1 A:GLU448 4.1 52.4 1.0 OD1 A:ASP439 4.1 62.6 1.0 N A:TRP444 4.1 56.8 1.0 N A:THR443 4.2 66.5 1.0 CA A:ASP437 4.4 55.8 1.0 CA A:TRP444 4.4 56.8 1.0 N A:THR438 4.5 55.2 1.0 OD1 A:ASP437 4.6 55.8 1.0 C A:ASP437 4.6 55.8 1.0 C A:ASP439 4.6 62.6 1.0 CG2 A:THR443 4.8 66.5 1.0 N A:SER445 4.8 54.3 1.0 C A:THR438 5.0 55.2 1.0

Calcium binding site 2 out of 2 in the Structure of Drosophila Melanogaster Glcnac-1-Phosphotransferase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Drosophila Melanogaster Glcnac-1-Phosphotransferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca701 b:63.3 occ:1.00 O B:THR443 2.2 67.3 1.0 CB B:ASP439 2.2 62.4 1.0 OG1 B:THR443 2.5 67.3 1.0 OD2 B:ASP439 2.5 62.4 1.0 OE2 B:GLU448 2.6 52.5 1.0 OD2 B:ASP437 2.7 56.0 1.0 CG B:ASP439 2.8 62.4 1.0 C B:THR443 3.2 67.3 1.0 CB B:ASP437 3.2 56.0 1.0 CD B:GLU448 3.3 52.5 1.0 CG B:ASP437 3.4 56.0 1.0 CA B:ASP439 3.7 62.4 1.0 CB B:THR443 3.7 67.3 1.0 N B:ASP439 3.9 62.4 1.0 CA B:THR443 3.9 67.3 1.0 CG B:GLU448 3.9 52.5 1.0 OE1 B:GLU448 4.1 52.5 1.0 OD1 B:ASP439 4.1 62.4 1.0 N B:TRP444 4.1 57.2 1.0 N B:THR443 4.2 67.3 1.0 CA B:ASP437 4.4 56.0 1.0 CA B:TRP444 4.4 57.2 1.0 N B:THR438 4.5 55.7 1.0 OD1 B:ASP437 4.6 56.0 1.0 C B:ASP437 4.6 56.0 1.0 C B:ASP439 4.6 62.4 1.0 CG2 B:THR443 4.8 67.3 1.0 N B:SER445 4.8 54.2 1.0 C B:THR438 5.0 55.7 1.0

S.Du, G.Wang, Z.Zhang, C.Ma, N.Gao, J.Xiao. Structural Insights Into How Glcnac-1-Phosphotransferase Directs Lysosomal Protein Transport. J.Biol.Chem. V. 298 01702 2022.
ISSN: ESSN 1083-351X
PubMed: 35148990
DOI: 10.1016/J.JBC.2022.101702