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Calcium in PDB 7fgz: Marine Bacterial GH16 Hydrolase

Protein crystallography data

The structure of Marine Bacterial GH16 Hydrolase, PDB code: 7fgz was solved by J.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.32 / 2.20
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.449, 77.293, 82.366, 90, 90, 90
R / Rfree (%) 16.2 / 20.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Marine Bacterial GH16 Hydrolase (pdb code 7fgz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Marine Bacterial GH16 Hydrolase, PDB code: 7fgz:

Calcium binding site 1 out of 1 in 7fgz

Go back to Calcium Binding Sites List in 7fgz
Calcium binding site 1 out of 1 in the Marine Bacterial GH16 Hydrolase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Marine Bacterial GH16 Hydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:15.2
occ:1.00
O A:ASP47 2.3 14.8 1.0
O A:GLY87 2.3 13.9 1.0
OD1 A:ASP271 2.3 13.9 1.0
O A:ASP271 2.4 11.9 1.0
OD1 A:ASN49 2.4 15.2 1.0
O A:HOH431 2.5 12.0 1.0
O A:HOH489 2.5 10.3 1.0
C A:ASP271 3.4 10.8 1.0
C A:GLY87 3.4 13.6 1.0
CG A:ASN49 3.5 16.4 1.0
C A:ASP47 3.5 14.2 1.0
CG A:ASP271 3.5 12.4 1.0
CA A:GLY87 3.8 14.9 1.0
CA A:ASP271 3.9 11.2 1.0
ND2 A:ASN49 4.0 16.0 1.0
CA A:ASP47 4.2 14.4 1.0
O A:HOH486 4.2 26.0 1.0
C A:PHE48 4.3 14.6 1.0
CB A:ASP271 4.3 11.7 1.0
O A:PHE48 4.3 14.0 1.0
O A:GLU21 4.4 21.9 1.0
CB A:ASP47 4.4 14.8 1.0
OD2 A:ASP271 4.4 13.0 1.0
O A:HOH436 4.5 20.5 1.0
N A:TRP272 4.5 10.4 1.0
N A:ASN49 4.5 15.1 1.0
N A:PHE48 4.5 13.3 1.0
N A:ASN88 4.6 12.6 1.0
O A:HOH482 4.7 23.8 1.0
CB A:ASN49 4.7 15.9 1.0
CB A:PHE48 4.7 13.1 1.0
OD1 A:ASP47 4.8 16.0 1.0
O A:HOH561 4.8 34.3 1.0
CA A:ASN49 4.8 16.5 1.0
CA A:PHE48 4.8 13.7 1.0
CB A:TRP272 4.8 10.0 1.0
CA A:TRP272 5.0 10.1 1.0
OD1 A:ASN88 5.0 14.6 1.0

Reference:

J.Yang, J.Yang. N/A N/A.
Page generated: Fri Jul 19 00:51:02 2024

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