Calcium in PDB 7pl3: Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae

Enzymatic activity of Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae

All present enzymatic activity of Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae:
3.2.1.96;

Protein crystallography data

The structure of Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae, PDB code: 7pl3 was solved by S.Martinez Caballero, J.A.Hermoso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	43.43 / 1.78
*Space group*	C 2 2 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	47.157, 92.675, 124.56, 90, 90, 90
*R / R_free (%)*	20.6 / 22.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae (pdb code 7pl3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae, PDB code: 7pl3:

Calcium binding site 1 out of 1 in 7pl3

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Calcium Binding Sites List in 7pl3

Calcium binding site 1 out of 1 in the Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca702 b:29.8 occ:1.00	OD2	A:ASP421	2.3	31.7	1.0
	O	A:HOH893	2.5	37.9	1.0
	OE1	A:GLU425	2.6	44.6	1.0
	OD2	A:ASP423	2.7	32.9	1.0
	CD	A:GLU425	3.3	36.6	1.0
	CG	A:ASP421	3.5	24.8	1.0
	CG	A:ASP423	3.6	34.4	1.0
	OE2	A:GLU425	3.9	48.3	1.0
	CB	A:ASP423	4.0	32.0	1.0
	OD1	A:ASP421	4.0	27.2	1.0
	O	A:HOH803	4.1	36.3	1.0
	CG	A:GLU425	4.2	34.9	1.0
	CB	A:GLU425	4.4	25.2	1.0
	CB	A:ASP421	4.7	22.7	1.0
	OD1	A:ASP423	4.7	37.8	1.0

Reference:

S.Martinez Caballero, J.A.Hermoso. Crystal Structure of Catalytic Domain in Closed Conformation of Lytb From Streptococcus Pneumoniae To Be Published.

Page generated: Thu Jul 10 00:17:17 2025

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