Atomistry » Calcium » PDB 7qga-7rcc » 7qhm
Atomistry »
  Calcium »
    PDB 7qga-7rcc »
      7qhm »

Calcium in PDB 7qhm: Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)

Enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)

All present enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound):
7.1.1.8; 7.1.1.9;

Other elements in 7qhm:

The structure of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Iron (Fe) 16 atoms
Copper (Cu) 6 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) (pdb code 7qhm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound), PDB code: 7qhm:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7qhm

Go back to Calcium Binding Sites List in 7qhm
Calcium binding site 1 out of 2 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca605

b:33.9
occ:1.00
 OE1 D:GLU66 2.2 35.8 1.0
O D:GLY71 2.3 42.2 1.0
O D:THR69 2.3 40.7 1.0
O D:HOH702 2.4 30.2 1.0
OE1 D:GLN73 2.4 44.1 1.0
O D:GLU66 2.4 35.8 1.0
O D:HOH703 2.4 33.0 1.0
H D:GLN73 3.2 44.1 1.0
CD D:GLN73 3.2 44.1 1.0
HG1 D:THR69 3.2 40.7 1.0
C D:GLY71 3.3 42.2 1.0
H D:THR69 3.4 40.7 1.0
CD D:GLU66 3.4 35.8 1.0
C D:THR69 3.5 40.7 1.0
C D:GLU66 3.5 35.8 1.0
HB2 D:GLN73 3.6 44.1 1.0
HA D:GLU66 3.6 35.8 1.0
HA D:LEU72 3.8 40.7 1.0
HG3 D:GLU66 3.8 35.8 1.0
HE22 D:GLN73 3.9 44.1 1.0
N D:GLN73 3.9 44.1 1.0
NE2 D:GLN73 3.9 44.1 1.0
OG1 D:THR69 3.9 40.7 1.0
N D:GLY71 4.0 42.2 1.0
C D:PRO70 4.1 41.7 1.0
CA D:GLU66 4.1 35.8 1.0
CG D:GLN73 4.1 44.1 1.0
CA D:GLY71 4.1 42.2 1.0
N D:THR69 4.1 40.7 1.0
CG D:GLU66 4.1 35.8 1.0
HG2 D:GLN73 4.2 44.1 1.0
N D:LEU72 4.2 40.7 1.0
HA D:PRO70 4.2 41.7 1.0
H D:GLY71 4.2 42.2 1.0
CB D:GLN73 4.2 44.1 1.0
CA D:THR69 4.3 40.7 1.0
HA D:LEU67 4.3 33.3 1.0
HA3 D:GLY71 4.4 42.2 1.0
CA D:LEU72 4.4 40.7 1.0
OE2 D:GLU66 4.4 35.8 1.0
N D:PRO70 4.4 41.7 1.0
O D:PRO70 4.4 41.7 1.0
CA D:PRO70 4.5 41.7 1.0
N D:LEU67 4.6 33.3 1.0
HE21 D:GLN73 4.6 44.1 1.0
C D:LEU72 4.7 40.7 1.0
H D:PHE68 4.7 38.3 1.0
CA D:GLN73 4.7 44.1 1.0
CB D:THR69 4.7 40.7 1.0
CB D:GLU66 4.7 35.8 1.0
HD23 D:LEU72 4.7 40.7 1.0
CA D:LEU67 4.8 33.3 1.0
N D:PHE68 4.9 38.3 1.0
O D:ALA65 4.9 34.4 1.0
C D:LEU67 4.9 33.3 1.0
H D:LEU72 5.0 40.7 1.0
HA2 D:GLY71 5.0 42.2 1.0
HG3 D:GLN73 5.0 44.1 1.0
HG2 D:GLU66 5.0 35.8 1.0

Calcium binding site 2 out of 2 in 7qhm

Go back to Calcium Binding Sites List in 7qhm
Calcium binding site 2 out of 2 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Ca604

b:14.4
occ:1.00
 OE1 Q:GLU66 2.2 18.7 1.0
O Q:GLY71 2.2 21.1 1.0
O Q:THR69 2.3 21.2 1.0
O Q:GLU66 2.4 18.7 1.0
OE1 Q:GLN73 2.4 21.4 1.0
O Q:HOH731 2.4 21.8 1.0
O Q:HOH735 2.4 13.7 1.0
H Q:THR69 3.0 21.2 1.0
HG1 Q:THR69 3.3 21.2 1.0
C Q:THR69 3.4 21.2 1.0
CD Q:GLU66 3.4 18.7 1.0
C Q:GLY71 3.5 21.1 1.0
C Q:GLU66 3.5 18.7 1.0
H Q:GLN73 3.5 21.4 1.0
CD Q:GLN73 3.6 21.4 1.0
HA Q:LEU72 3.7 19.8 1.0
HA Q:GLU66 3.7 18.7 1.0
N Q:THR69 3.8 21.2 1.0
HB2 Q:GLN73 3.8 21.4 1.0
HG3 Q:GLU66 3.9 18.7 1.0
OG1 Q:THR69 3.9 21.2 1.0
CA Q:THR69 4.1 21.2 1.0
H Q:PHE68 4.1 21.2 1.0
N Q:GLY71 4.1 21.1 1.0
CA Q:GLU66 4.2 18.7 1.0
C Q:PRO70 4.2 21.1 1.0
CG Q:GLU66 4.2 18.7 1.0
N Q:GLN73 4.2 21.4 1.0
HA Q:LEU67 4.2 19.6 1.0
HE22 Q:GLN73 4.3 21.4 1.0
H Q:GLY71 4.3 21.1 1.0
N Q:LEU72 4.4 19.8 1.0
OE2 Q:GLU66 4.4 18.7 1.0
CA Q:LEU72 4.4 19.8 1.0
O Q:PRO70 4.4 21.1 1.0
CA Q:GLY71 4.4 21.1 1.0
NE2 Q:GLN73 4.4 21.4 1.0
N Q:PRO70 4.4 21.1 1.0
N Q:PHE68 4.4 21.2 1.0
N Q:LEU67 4.5 19.6 1.0
CB Q:GLN73 4.5 21.4 1.0
CG Q:GLN73 4.5 21.4 1.0
HD23 Q:LEU72 4.6 19.8 1.0
CB Q:THR69 4.6 21.2 1.0
CA Q:LEU67 4.7 19.6 1.0
C Q:LEU67 4.7 19.6 1.0
HG2 Q:GLN73 4.7 21.4 1.0
CA Q:PRO70 4.7 21.1 1.0
C Q:LEU72 4.8 19.8 1.0
CB Q:GLU66 4.8 18.7 1.0
OD1 Q:ASP464 4.8 19.1 1.0
O Q:ALA65 4.9 20.2 1.0
HB Q:THR69 4.9 21.2 1.0
HA Q:PRO70 4.9 21.1 1.0
C Q:PHE68 4.9 21.2 1.0
HA Q:THR69 5.0 21.2 1.0
HA3 Q:GLY71 5.0 21.1 1.0

Reference:

W.C.Kao, C.Ortmann De Percin Northumberland, T.C.Cheng, J.Ortiz, A.Durand, O.Von Loeffelholz, O.Schilling, M.L.Biniossek, B.P.Klaholz, C.Hunte. Structural Basis For Safe and Efficient Energy Conversion in A Respiratory Supercomplex. Nat Commun V. 13 545 2022.
ISSN: ESSN 2041-1723
PubMed: 35087070
DOI: 10.1038/S41467-022-28179-X
Page generated: Thu Jul 10 00:35:20 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy