Calcium in PDB 7s5c: M. Xanthus Ferritin-Like Protein Encb
Protein crystallography data
The structure of M. Xanthus Ferritin-Like Protein Encb, PDB code: 7s5c
was solved by
E.Eren,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
43.34 /
1.86
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.83,
68.36,
83.39,
90,
103.62,
90
|
|
R / Rfree (%)
|
18.9 /
22.4
|
Other elements in 7s5c:
The structure of M. Xanthus Ferritin-Like Protein Encb also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the M. Xanthus Ferritin-Like Protein Encb
(pdb code 7s5c). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
M. Xanthus Ferritin-Like Protein Encb, PDB code: 7s5c:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 1 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:31.3
occ:0.34
|
OE2
|
A:GLU58
|
2.7
|
44.9
|
1.0
|
|
OG1
|
A:THR31
|
2.7
|
20.0
|
1.0
|
|
O
|
B:HOH301
|
2.9
|
36.1
|
1.0
|
|
CA
|
B:CA202
|
3.5
|
26.9
|
0.4
|
|
CB
|
A:THR31
|
3.5
|
22.2
|
1.0
|
|
CA
|
A:GLU28
|
3.6
|
22.0
|
1.0
|
|
CG
|
A:ARG27
|
3.8
|
25.4
|
1.0
|
|
N
|
A:GLU28
|
3.8
|
21.8
|
1.0
|
|
O
|
A:ARG27
|
3.8
|
22.5
|
1.0
|
|
CG
|
A:GLU28
|
3.9
|
21.4
|
1.0
|
|
C
|
A:ARG27
|
3.9
|
21.5
|
1.0
|
|
CG2
|
A:THR31
|
3.9
|
27.3
|
1.0
|
|
CD
|
A:GLU58
|
3.9
|
42.2
|
1.0
|
|
OH
|
B:TYR35
|
4.0
|
26.2
|
1.0
|
|
OG1
|
B:THR31
|
4.0
|
20.5
|
1.0
|
|
CG2
|
B:THR31
|
4.0
|
21.5
|
1.0
|
|
FE
|
A:FE201
|
4.3
|
85.5
|
1.0
|
|
CB
|
A:GLU28
|
4.3
|
19.7
|
1.0
|
|
NE
|
A:ARG27
|
4.4
|
23.9
|
1.0
|
|
CD
|
A:ARG27
|
4.4
|
23.1
|
1.0
|
|
CB
|
A:ARG27
|
4.5
|
19.0
|
1.0
|
|
CB
|
B:THR31
|
4.6
|
20.9
|
1.0
|
|
C
|
A:GLU28
|
4.7
|
26.9
|
1.0
|
|
OE1
|
A:GLU58
|
4.7
|
40.0
|
1.0
|
|
CG
|
A:GLU58
|
4.8
|
29.9
|
1.0
|
|
O
|
A:GLU28
|
4.8
|
20.1
|
1.0
|
|
CA
|
A:ARG27
|
4.9
|
19.9
|
1.0
|
|
CA
|
A:THR31
|
4.9
|
23.7
|
1.0
|
|
NE
|
B:ARG27
|
4.9
|
25.6
|
1.0
|
|
NH2
|
B:ARG27
|
4.9
|
24.1
|
1.0
|
|
CZ
|
B:TYR35
|
5.0
|
25.1
|
1.0
|
|
Calcium binding site 2 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 2 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:26.9
occ:0.42
|
OG1
|
B:THR31
|
2.6
|
20.5
|
1.0
|
|
O
|
A:HOH306
|
3.0
|
32.8
|
1.0
|
|
OE1
|
B:GLU58
|
3.1
|
47.7
|
1.0
|
|
CB
|
B:THR31
|
3.3
|
20.9
|
1.0
|
|
CA
|
A:CA204
|
3.5
|
31.3
|
0.3
|
|
CA
|
B:GLU28
|
3.6
|
21.3
|
1.0
|
|
O
|
B:ARG27
|
3.7
|
21.2
|
1.0
|
|
CG2
|
B:THR31
|
3.8
|
21.5
|
1.0
|
|
N
|
B:GLU28
|
3.8
|
21.0
|
1.0
|
|
CG
|
B:ARG27
|
3.8
|
19.9
|
1.0
|
|
C
|
B:ARG27
|
3.9
|
17.0
|
1.0
|
|
CD
|
B:GLU58
|
4.0
|
46.7
|
1.0
|
|
OG1
|
A:THR31
|
4.0
|
20.0
|
1.0
|
|
CG
|
B:GLU28
|
4.0
|
21.9
|
1.0
|
|
CG2
|
A:THR31
|
4.0
|
27.3
|
1.0
|
|
FE
|
B:FE201
|
4.1
|
120.2
|
1.0
|
|
OH
|
A:TYR35
|
4.1
|
27.9
|
1.0
|
|
CB
|
B:GLU28
|
4.3
|
22.5
|
1.0
|
|
NE
|
B:ARG27
|
4.3
|
25.6
|
1.0
|
|
CD
|
B:ARG27
|
4.4
|
23.4
|
1.0
|
|
OE2
|
B:GLU58
|
4.5
|
39.7
|
1.0
|
|
CB
|
B:ARG27
|
4.5
|
22.4
|
1.0
|
|
CB
|
A:THR31
|
4.6
|
22.2
|
1.0
|
|
C
|
B:GLU28
|
4.7
|
22.0
|
1.0
|
|
OE2
|
A:GLU58
|
4.7
|
44.9
|
1.0
|
|
CA
|
B:THR31
|
4.7
|
21.8
|
1.0
|
|
NH2
|
A:ARG27
|
4.8
|
21.4
|
1.0
|
|
NE
|
A:ARG27
|
4.8
|
23.9
|
1.0
|
|
O
|
B:GLU28
|
4.8
|
19.9
|
1.0
|
|
CG
|
B:GLU58
|
4.8
|
26.3
|
1.0
|
|
CA
|
B:ARG27
|
4.9
|
19.7
|
1.0
|
|
N
|
B:THR31
|
5.0
|
16.8
|
1.0
|
|
Calcium binding site 3 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 3 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca203
b:35.7
occ:0.46
|
OG1
|
E:THR31
|
2.7
|
27.8
|
1.0
|
|
OE1
|
E:GLU58
|
3.0
|
48.5
|
1.0
|
|
O
|
F:HOH301
|
3.0
|
38.0
|
1.0
|
|
CA
|
F:CA203
|
3.1
|
31.2
|
0.4
|
|
CB
|
E:THR31
|
3.4
|
25.9
|
1.0
|
|
CG2
|
E:THR31
|
3.7
|
27.8
|
1.0
|
|
CA
|
E:GLU28
|
3.8
|
25.8
|
1.0
|
|
FE
|
E:FE201
|
3.8
|
98.7
|
1.0
|
|
O
|
E:ARG27
|
3.9
|
25.4
|
1.0
|
|
CD
|
E:GLU58
|
3.9
|
42.8
|
1.0
|
|
CG2
|
F:THR31
|
3.9
|
30.0
|
1.0
|
|
OG1
|
F:THR31
|
3.9
|
25.0
|
1.0
|
|
OH
|
F:TYR35
|
4.0
|
26.4
|
1.0
|
|
CG
|
E:ARG27
|
4.0
|
21.8
|
1.0
|
|
N
|
E:GLU28
|
4.1
|
23.0
|
1.0
|
|
C
|
E:ARG27
|
4.1
|
19.3
|
1.0
|
|
CG
|
E:GLU28
|
4.2
|
25.9
|
1.0
|
|
NE
|
E:ARG27
|
4.5
|
29.0
|
1.0
|
|
CB
|
E:GLU28
|
4.5
|
29.1
|
1.0
|
|
OE1
|
F:GLU58
|
4.5
|
36.8
|
1.0
|
|
OE2
|
E:GLU58
|
4.5
|
35.6
|
1.0
|
|
CD
|
E:ARG27
|
4.5
|
26.7
|
1.0
|
|
CB
|
F:THR31
|
4.5
|
22.3
|
1.0
|
|
CB
|
E:ARG27
|
4.7
|
23.9
|
1.0
|
|
CG
|
E:GLU58
|
4.7
|
40.3
|
1.0
|
|
FE
|
F:FE201
|
4.8
|
85.7
|
1.0
|
|
CA
|
E:THR31
|
4.8
|
26.6
|
1.0
|
|
NE
|
F:ARG27
|
4.9
|
26.8
|
1.0
|
|
C
|
E:GLU28
|
4.9
|
26.0
|
1.0
|
|
OE2
|
F:GLU58
|
4.9
|
37.0
|
1.0
|
|
Calcium binding site 4 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 4 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca203
b:31.2
occ:0.40
|
OE1
|
F:GLU58
|
2.7
|
36.8
|
1.0
|
|
OG1
|
F:THR31
|
2.7
|
25.0
|
1.0
|
|
O
|
E:HOH310
|
3.0
|
37.6
|
1.0
|
|
CA
|
E:CA203
|
3.1
|
35.7
|
0.5
|
|
CB
|
F:THR31
|
3.4
|
22.3
|
1.0
|
|
CA
|
F:GLU28
|
3.7
|
25.4
|
1.0
|
|
FE
|
F:FE201
|
3.7
|
85.7
|
1.0
|
|
CD
|
F:GLU58
|
3.7
|
51.4
|
1.0
|
|
CG2
|
F:THR31
|
3.8
|
30.0
|
1.0
|
|
O
|
F:ARG27
|
3.8
|
22.4
|
1.0
|
|
OG1
|
E:THR31
|
3.9
|
27.8
|
1.0
|
|
N
|
F:GLU28
|
3.9
|
22.4
|
1.0
|
|
CG
|
F:GLU28
|
3.9
|
24.4
|
1.0
|
|
CG
|
F:ARG27
|
3.9
|
23.2
|
1.0
|
|
C
|
F:ARG27
|
4.0
|
21.3
|
1.0
|
|
CG2
|
E:THR31
|
4.0
|
27.8
|
1.0
|
|
OH
|
E:TYR35
|
4.2
|
29.7
|
1.0
|
|
CB
|
F:GLU28
|
4.4
|
21.1
|
1.0
|
|
OE2
|
F:GLU58
|
4.4
|
37.0
|
1.0
|
|
NE
|
F:ARG27
|
4.4
|
26.8
|
1.0
|
|
CD
|
F:ARG27
|
4.4
|
27.5
|
1.0
|
|
CB
|
E:THR31
|
4.6
|
25.9
|
1.0
|
|
CB
|
F:ARG27
|
4.7
|
22.7
|
1.0
|
|
CG
|
F:GLU58
|
4.7
|
35.3
|
1.0
|
|
C
|
F:GLU28
|
4.7
|
23.8
|
1.0
|
|
NE
|
E:ARG27
|
4.8
|
29.0
|
1.0
|
|
CA
|
F:THR31
|
4.8
|
20.7
|
1.0
|
|
O
|
F:GLU28
|
4.9
|
21.6
|
1.0
|
|
NH2
|
E:ARG27
|
4.9
|
23.7
|
1.0
|
|
Calcium binding site 5 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 5 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca203
b:35.5
occ:0.41
|
OG1
|
G:THR31
|
2.7
|
24.8
|
1.0
|
|
OE2
|
G:GLU58
|
2.9
|
55.2
|
1.0
|
|
CA
|
H:CA203
|
3.0
|
30.7
|
0.3
|
|
O
|
H:HOH313
|
3.1
|
43.4
|
1.0
|
|
CB
|
G:THR31
|
3.4
|
26.9
|
1.0
|
|
CG2
|
G:THR31
|
3.7
|
28.7
|
1.0
|
|
CA
|
G:GLU28
|
3.8
|
24.5
|
1.0
|
|
O
|
G:ARG27
|
3.9
|
24.2
|
1.0
|
|
CD
|
G:GLU58
|
3.9
|
54.9
|
1.0
|
|
CG2
|
H:THR31
|
3.9
|
31.1
|
1.0
|
|
OG1
|
H:THR31
|
4.0
|
27.8
|
1.0
|
|
FE
|
G:FE202
|
4.0
|
119.0
|
1.0
|
|
CG
|
G:ARG27
|
4.0
|
26.6
|
1.0
|
|
N
|
G:GLU28
|
4.1
|
26.5
|
1.0
|
|
C
|
G:ARG27
|
4.1
|
28.2
|
1.0
|
|
CG
|
G:GLU28
|
4.2
|
31.4
|
1.0
|
|
OH
|
H:TYR35
|
4.2
|
32.3
|
1.0
|
|
OE1
|
H:GLU58
|
4.5
|
49.2
|
1.0
|
|
NE
|
G:ARG27
|
4.5
|
28.5
|
1.0
|
|
CB
|
G:GLU28
|
4.5
|
27.9
|
1.0
|
|
CB
|
H:THR31
|
4.5
|
30.1
|
1.0
|
|
OE1
|
G:GLU58
|
4.6
|
56.4
|
1.0
|
|
CD
|
G:ARG27
|
4.6
|
30.7
|
1.0
|
|
FE
|
H:FE202
|
4.7
|
110.1
|
1.0
|
|
CB
|
G:ARG27
|
4.7
|
28.6
|
1.0
|
|
CG
|
G:GLU58
|
4.8
|
44.4
|
1.0
|
|
NE
|
H:ARG27
|
4.8
|
28.3
|
1.0
|
|
CA
|
G:THR31
|
4.8
|
27.4
|
1.0
|
|
C
|
G:GLU28
|
4.9
|
25.9
|
1.0
|
|
NH2
|
H:ARG27
|
4.9
|
26.4
|
1.0
|
|
O
|
G:GLU28
|
5.0
|
25.6
|
1.0
|
|
Calcium binding site 6 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 6 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca203
b:30.7
occ:0.33
|
OG1
|
H:THR31
|
2.7
|
27.8
|
1.0
|
|
OE1
|
H:GLU58
|
2.9
|
49.2
|
1.0
|
|
CA
|
G:CA203
|
3.0
|
35.5
|
0.4
|
|
O
|
G:HOH318
|
3.1
|
38.9
|
1.0
|
|
CB
|
H:THR31
|
3.5
|
30.1
|
1.0
|
|
CA
|
H:GLU28
|
3.7
|
27.1
|
1.0
|
|
OG1
|
G:THR31
|
3.8
|
24.8
|
1.0
|
|
CG
|
H:ARG27
|
3.8
|
30.8
|
1.0
|
|
O
|
H:ARG27
|
3.8
|
27.1
|
1.0
|
|
CG2
|
H:THR31
|
3.9
|
31.1
|
1.0
|
|
FE
|
H:FE202
|
3.9
|
110.1
|
1.0
|
|
N
|
H:GLU28
|
4.0
|
28.8
|
1.0
|
|
CD
|
H:GLU58
|
4.0
|
50.7
|
1.0
|
|
CG
|
H:GLU28
|
4.0
|
26.8
|
1.0
|
|
C
|
H:ARG27
|
4.0
|
28.9
|
1.0
|
|
CG2
|
G:THR31
|
4.0
|
28.7
|
1.0
|
|
OH
|
G:TYR35
|
4.2
|
33.2
|
1.0
|
|
NE
|
H:ARG27
|
4.3
|
28.3
|
1.0
|
|
CD
|
H:ARG27
|
4.3
|
26.3
|
1.0
|
|
CB
|
H:GLU28
|
4.4
|
28.0
|
1.0
|
|
CB
|
G:THR31
|
4.5
|
26.9
|
1.0
|
|
CB
|
H:ARG27
|
4.6
|
23.6
|
1.0
|
|
OE2
|
H:GLU58
|
4.7
|
40.6
|
1.0
|
|
NE
|
G:ARG27
|
4.8
|
28.5
|
1.0
|
|
C
|
H:GLU28
|
4.8
|
23.4
|
1.0
|
|
OE2
|
G:GLU58
|
4.8
|
55.2
|
1.0
|
|
NH2
|
G:ARG27
|
4.9
|
27.0
|
1.0
|
|
CA
|
H:THR31
|
4.9
|
28.6
|
1.0
|
|
O
|
H:GLU28
|
4.9
|
25.0
|
1.0
|
|
CG
|
H:GLU58
|
4.9
|
37.9
|
1.0
|
|
CA
|
H:ARG27
|
5.0
|
22.3
|
1.0
|
|
Calcium binding site 7 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 7 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca203
b:37.3
occ:0.46
|
OG1
|
I:THR31
|
2.7
|
27.8
|
1.0
|
|
O
|
J:HOH307
|
3.0
|
40.3
|
1.0
|
|
OE1
|
I:GLU58
|
3.1
|
43.9
|
1.0
|
|
CA
|
J:CA202
|
3.2
|
36.9
|
0.4
|
|
CB
|
I:THR31
|
3.4
|
22.4
|
1.0
|
|
CG2
|
I:THR31
|
3.7
|
27.3
|
1.0
|
|
CG
|
I:ARG27
|
3.8
|
29.0
|
1.0
|
|
CA
|
I:GLU28
|
3.8
|
27.5
|
1.0
|
|
OG1
|
J:THR31
|
3.9
|
27.2
|
1.0
|
|
O
|
I:ARG27
|
3.9
|
27.8
|
1.0
|
|
FE
|
I:FE202
|
3.9
|
100.8
|
1.0
|
|
CG2
|
J:THR31
|
4.0
|
25.9
|
1.0
|
|
C
|
I:ARG27
|
4.1
|
28.9
|
1.0
|
|
N
|
I:GLU28
|
4.1
|
27.1
|
1.0
|
|
CD
|
I:GLU58
|
4.1
|
56.6
|
1.0
|
|
CG
|
I:GLU28
|
4.2
|
32.1
|
1.0
|
|
OH
|
J:TYR35
|
4.2
|
35.1
|
1.0
|
|
NE
|
I:ARG27
|
4.3
|
26.3
|
1.0
|
|
CD
|
I:ARG27
|
4.3
|
31.9
|
1.0
|
|
CB
|
I:GLU28
|
4.5
|
31.8
|
1.0
|
|
CB
|
J:THR31
|
4.6
|
27.3
|
1.0
|
|
NE
|
J:ARG27
|
4.6
|
26.5
|
1.0
|
|
CB
|
I:ARG27
|
4.6
|
24.7
|
1.0
|
|
NH2
|
J:ARG27
|
4.7
|
28.1
|
1.0
|
|
OE1
|
J:GLU58
|
4.8
|
45.7
|
1.0
|
|
CA
|
I:THR31
|
4.8
|
25.0
|
1.0
|
|
OE2
|
I:GLU58
|
4.9
|
46.1
|
1.0
|
|
C
|
I:GLU28
|
4.9
|
27.8
|
1.0
|
|
FE
|
J:FE201
|
4.9
|
108.8
|
1.0
|
|
CG
|
I:GLU58
|
4.9
|
40.1
|
1.0
|
|
CA
|
I:ARG27
|
5.0
|
28.2
|
1.0
|
|
Calcium binding site 8 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 8 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca202
b:36.9
occ:0.37
|
OE1
|
J:GLU58
|
2.6
|
45.7
|
1.0
|
|
OG1
|
J:THR31
|
2.7
|
27.2
|
1.0
|
|
O
|
I:HOH313
|
2.9
|
34.4
|
1.0
|
|
CA
|
I:CA203
|
3.2
|
37.3
|
0.5
|
|
CB
|
J:THR31
|
3.4
|
27.3
|
1.0
|
|
CA
|
J:GLU28
|
3.6
|
22.6
|
1.0
|
|
CD
|
J:GLU58
|
3.6
|
47.3
|
1.0
|
|
CG2
|
J:THR31
|
3.7
|
25.9
|
1.0
|
|
FE
|
J:FE201
|
3.8
|
108.8
|
1.0
|
|
O
|
J:ARG27
|
3.8
|
25.3
|
1.0
|
|
N
|
J:GLU28
|
3.9
|
23.4
|
1.0
|
|
CG
|
J:GLU28
|
3.9
|
27.9
|
1.0
|
|
C
|
J:ARG27
|
4.0
|
25.2
|
1.0
|
|
CG
|
J:ARG27
|
4.0
|
29.0
|
1.0
|
|
OH
|
I:TYR35
|
4.1
|
30.6
|
1.0
|
|
CG2
|
I:THR31
|
4.2
|
27.3
|
1.0
|
|
OG1
|
I:THR31
|
4.2
|
27.8
|
1.0
|
|
CB
|
J:GLU28
|
4.3
|
22.8
|
1.0
|
|
OE2
|
J:GLU58
|
4.3
|
41.8
|
1.0
|
|
CG
|
J:GLU58
|
4.5
|
29.7
|
1.0
|
|
CD
|
J:ARG27
|
4.6
|
31.0
|
1.0
|
|
NE
|
J:ARG27
|
4.6
|
26.5
|
1.0
|
|
C
|
J:GLU28
|
4.7
|
25.6
|
1.0
|
|
CB
|
J:ARG27
|
4.7
|
26.3
|
1.0
|
|
CA
|
J:THR31
|
4.8
|
26.3
|
1.0
|
|
O
|
J:GLU28
|
4.8
|
25.2
|
1.0
|
|
CB
|
I:THR31
|
4.8
|
22.4
|
1.0
|
|
OE1
|
I:GLU58
|
4.9
|
43.9
|
1.0
|
|
FE
|
I:FE202
|
4.9
|
100.8
|
1.0
|
|
NE
|
I:ARG27
|
5.0
|
26.3
|
1.0
|
|
Calcium binding site 9 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 9 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:30.0
occ:0.40
|
OG1
|
C:THR31
|
2.7
|
26.8
|
1.0
|
|
OE1
|
C:GLU58
|
2.9
|
57.1
|
1.0
|
|
O
|
D:HOH304
|
3.1
|
34.3
|
1.0
|
|
CA
|
D:CA205
|
3.2
|
30.5
|
0.4
|
|
CB
|
C:THR31
|
3.4
|
24.0
|
1.0
|
|
CG2
|
C:THR31
|
3.7
|
30.1
|
1.0
|
|
CA
|
C:GLU28
|
3.8
|
25.4
|
1.0
|
|
OG1
|
D:THR31
|
3.8
|
24.2
|
1.0
|
|
O
|
C:ARG27
|
3.9
|
20.6
|
1.0
|
|
FE
|
D:FE202
|
3.9
|
114.9
|
1.0
|
|
CG
|
C:ARG27
|
3.9
|
25.9
|
1.0
|
|
CD
|
C:GLU58
|
4.0
|
52.7
|
1.0
|
|
CG2
|
D:THR31
|
4.0
|
21.6
|
1.0
|
|
N
|
C:GLU28
|
4.1
|
18.5
|
1.0
|
|
C
|
C:ARG27
|
4.1
|
20.4
|
1.0
|
|
OH
|
D:TYR35
|
4.1
|
31.2
|
1.0
|
|
CG
|
C:GLU28
|
4.2
|
23.1
|
1.0
|
|
NE
|
C:ARG27
|
4.4
|
26.0
|
1.0
|
|
CD
|
C:ARG27
|
4.4
|
25.6
|
1.0
|
|
CB
|
D:THR31
|
4.6
|
21.8
|
1.0
|
|
CB
|
C:GLU28
|
4.6
|
25.9
|
1.0
|
|
OE2
|
C:GLU58
|
4.6
|
50.5
|
1.0
|
|
CB
|
C:ARG27
|
4.7
|
21.2
|
1.0
|
|
NE
|
D:ARG27
|
4.7
|
28.8
|
1.0
|
|
OE1
|
D:GLU58
|
4.8
|
36.5
|
1.0
|
|
CA
|
C:THR31
|
4.8
|
24.8
|
1.0
|
|
FE
|
D:FE201
|
4.8
|
100.5
|
1.0
|
|
NH2
|
D:ARG27
|
4.8
|
25.2
|
1.0
|
|
C
|
C:GLU28
|
4.9
|
24.0
|
1.0
|
|
CG
|
C:GLU58
|
4.9
|
35.5
|
1.0
|
|
O
|
C:GLU28
|
5.0
|
21.7
|
1.0
|
|
Calcium binding site 10 out
of 10 in 7s5c
Go back to
Calcium Binding Sites List in 7s5c
Calcium binding site 10 out
of 10 in the M. Xanthus Ferritin-Like Protein Encb
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of M. Xanthus Ferritin-Like Protein Encb within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca205
b:30.5
occ:0.38
|
OE1
|
D:GLU58
|
2.7
|
36.5
|
1.0
|
|
OG1
|
D:THR31
|
2.8
|
24.2
|
1.0
|
|
O
|
C:HOH313
|
3.0
|
29.3
|
1.0
|
|
CA
|
C:CA201
|
3.2
|
30.0
|
0.4
|
|
CB
|
D:THR31
|
3.4
|
21.8
|
1.0
|
|
CA
|
D:GLU28
|
3.6
|
24.7
|
1.0
|
|
CD
|
D:GLU58
|
3.7
|
47.8
|
1.0
|
|
FE
|
D:FE201
|
3.7
|
100.5
|
1.0
|
|
CG2
|
D:THR31
|
3.7
|
21.6
|
1.0
|
|
O
|
D:ARG27
|
3.9
|
23.7
|
1.0
|
|
N
|
D:GLU28
|
3.9
|
22.6
|
1.0
|
|
CG
|
D:GLU28
|
4.0
|
31.1
|
1.0
|
|
C
|
D:ARG27
|
4.0
|
23.6
|
1.0
|
|
CG
|
D:ARG27
|
4.0
|
26.8
|
1.0
|
|
OG1
|
C:THR31
|
4.0
|
26.8
|
1.0
|
|
OH
|
C:TYR35
|
4.1
|
31.2
|
1.0
|
|
CG2
|
C:THR31
|
4.1
|
30.1
|
1.0
|
|
CB
|
D:GLU28
|
4.3
|
23.9
|
1.0
|
|
OE2
|
D:GLU58
|
4.4
|
38.5
|
1.0
|
|
NE
|
D:ARG27
|
4.5
|
28.8
|
1.0
|
|
CD
|
D:ARG27
|
4.5
|
31.2
|
1.0
|
|
CG
|
D:GLU58
|
4.7
|
32.5
|
1.0
|
|
CB
|
D:ARG27
|
4.7
|
24.8
|
1.0
|
|
C
|
D:GLU28
|
4.7
|
26.0
|
1.0
|
|
CB
|
C:THR31
|
4.7
|
24.0
|
1.0
|
|
O
|
D:GLU28
|
4.8
|
23.5
|
1.0
|
|
CA
|
D:THR31
|
4.8
|
22.9
|
1.0
|
|
OE1
|
C:GLU58
|
4.9
|
57.1
|
1.0
|
|
NE
|
C:ARG27
|
5.0
|
26.0
|
1.0
|
|
Reference:
E.Eren,
B.Wang,
D.C.Winkler,
N.R.Watts,
A.C.Steven,
P.T.Wingfield.
Structural Characterization of the Myxococcus Xanthus Encapsulin and Ferritin-Like Cargo System Gives Insight Into Its Iron Storage Mechanism. Structure V. 30 551 2022.
ISSN: ISSN 0969-2126
PubMed: 35150605
DOI: 10.1016/J.STR.2022.01.008
Page generated: Thu Jul 10 00:54:35 2025
|
