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Calcium in PDB 7sp2: Structure of Pls A-Domain (Residues 391-656; 513-518 Deletion Mutant) From Staphylococcus Aureus

Protein crystallography data

The structure of Structure of Pls A-Domain (Residues 391-656; 513-518 Deletion Mutant) From Staphylococcus Aureus, PDB code: 7sp2 was solved by L.Clark, F.Whelan, K.E.Atkin, A.S.Brentnall, E.J.Dodson, J.P.Turkenburg, J.R.Potts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.19 / 2.75
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 97.21, 97.21, 97.21, 90, 90, 90
R / Rfree (%) 20.1 / 24.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Pls A-Domain (Residues 391-656; 513-518 Deletion Mutant) From Staphylococcus Aureus (pdb code 7sp2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Pls A-Domain (Residues 391-656; 513-518 Deletion Mutant) From Staphylococcus Aureus, PDB code: 7sp2:

Calcium binding site 1 out of 1 in 7sp2

Go back to Calcium Binding Sites List in 7sp2
Calcium binding site 1 out of 1 in the Structure of Pls A-Domain (Residues 391-656; 513-518 Deletion Mutant) From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Pls A-Domain (Residues 391-656; 513-518 Deletion Mutant) From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca300

b:79.2
occ:1.00
O A:HOH404 2.3 73.0 1.0
O A:HOH403 2.3 60.0 1.0
OD1 A:ASP119 2.3 85.9 1.0
OD1 A:ASN123 2.3 88.1 1.0
OD2 A:ASP119 2.4 77.5 1.0
O A:ALA121 2.4 82.0 1.0
OD1 A:ASP127 2.4 82.9 1.0
OD2 A:ASP127 2.4 87.2 1.0
CG A:ASP119 2.7 72.8 1.0
CG A:ASP127 2.7 86.6 1.0
C A:ALA121 3.5 78.3 1.0
CG A:ASN123 3.6 90.4 1.0
O A:LEU105 4.0 67.8 1.0
N A:ASN123 4.2 83.0 1.0
CB A:ASP119 4.2 66.1 1.0
CA A:ALA121 4.2 79.9 1.0
CB A:ASP127 4.2 90.9 1.0
ND2 A:ASN123 4.3 94.8 1.0
CB A:ALA121 4.3 82.4 1.0
N A:ALA121 4.3 80.4 1.0
OH A:TYR144 4.4 91.3 1.0
N A:TYR122 4.5 79.6 1.0
NZ A:LYS117 4.6 83.9 1.0
OD1 A:ASN124 4.7 83.4 1.0
CB A:ASN123 4.7 91.4 1.0
CA A:TYR122 4.7 82.7 1.0
O A:ASP84 4.7 79.5 1.0
N A:ASN124 4.7 89.7 1.0
OD1 A:ASN126 4.8 88.5 1.0
CE1 A:TYR144 4.8 90.0 1.0
CA A:ASN123 4.8 88.1 1.0
C A:TYR122 4.9 86.0 1.0
CZ A:TYR144 4.9 87.8 1.0

Reference:

L.Clark, F.Whelan, K.E.Atkin, A.S.Brentnall, E.J.Dodson, J.P.Turkenburg, J.R.Potts. Structure of Pls A-Domain (Residues 391-65) From Staphylococcus Aureus To Be Published.
Page generated: Thu Jul 10 01:05:29 2025

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