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Calcium in PDB 7spq: Crystal Structure of Burkholderia Glumae Toxoflavin Biosynthesis Protein Toxd

Protein crystallography data

The structure of Crystal Structure of Burkholderia Glumae Toxoflavin Biosynthesis Protein Toxd, PDB code: 7spq was solved by M.K.Fenwick, B.Philmus, S.E.Ealick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.00 / 1.80
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 135.978, 135.978, 135.978, 90, 90, 90
R / Rfree (%) 13.5 / 16.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Burkholderia Glumae Toxoflavin Biosynthesis Protein Toxd (pdb code 7spq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Burkholderia Glumae Toxoflavin Biosynthesis Protein Toxd, PDB code: 7spq:

Calcium binding site 1 out of 1 in 7spq

Go back to Calcium Binding Sites List in 7spq
Calcium binding site 1 out of 1 in the Crystal Structure of Burkholderia Glumae Toxoflavin Biosynthesis Protein Toxd


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Burkholderia Glumae Toxoflavin Biosynthesis Protein Toxd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:39.0
occ:1.00
O A:GLY257 2.4 15.0 1.0
O A:VAL259 2.5 15.9 1.0
O A:HOH661 2.6 22.7 1.0
O A:ASP254 2.7 15.3 1.0
O A:MET255 3.0 26.5 1.0
OE2 A:GLU261 3.1 20.7 1.0
O A:GLY293 3.4 22.1 1.0
C A:GLY257 3.4 18.3 1.0
C A:MET255 3.6 23.8 1.0
C A:VAL259 3.6 15.7 1.0
N A:GLY257 3.7 24.2 1.0
N A:VAL259 3.9 14.7 1.0
C A:ASP254 3.9 18.5 1.0
CD A:GLU261 3.9 21.1 1.0
C A:GLY256 4.0 19.0 1.0
CA A:GLY257 4.1 20.2 1.0
CA A:MET255 4.1 15.7 1.0
CG A:GLU261 4.1 18.8 1.0
O A:GLY292 4.1 23.0 1.0
C A:GLY292 4.3 21.1 1.0
O A:GLY256 4.3 27.7 1.0
CA A:VAL259 4.4 13.1 1.0
N A:GLY256 4.4 17.6 1.0
CA A:GLY292 4.5 19.4 1.0
N A:ASN258 4.5 17.6 1.0
N A:MET255 4.5 16.6 1.0
C A:GLY293 4.5 26.7 1.0
CA A:GLY256 4.5 18.1 1.0
N A:GLU260 4.6 15.2 1.0
C A:ASN258 4.7 15.1 1.0
CB A:ASN258 4.8 16.8 1.0
CA A:GLU260 4.8 17.5 1.0
N A:GLY293 4.8 21.8 1.0
O A:ARG291 4.9 22.1 1.0
OE1 A:GLU261 4.9 22.8 1.0
CA A:ASN258 4.9 16.4 1.0
NH2 A:ARG321 5.0 16.9 1.0
CA A:ASP254 5.0 15.7 1.0
CB A:ASP254 5.0 14.8 1.0

Reference:

M.K.Fenwick, T.P.Begley, S.E.Ealick, B.Philmus. Crystal Structure of Burkholderia Glumae Toxoflavin Biosynthesis Protein Toxd To Be Published.
Page generated: Thu Jul 10 01:05:50 2025

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