Atomistry » Calcium » PDB 7vmk-7wa0 » 7vn0
Atomistry »
  Calcium »
    PDB 7vmk-7wa0 »
      7vn0 »

Calcium in PDB 7vn0: Catpo Mutant - T188A

Enzymatic activity of Catpo Mutant - T188A

All present enzymatic activity of Catpo Mutant - T188A:
1.11.1.6;

Protein crystallography data

The structure of Catpo Mutant - T188A, PDB code: 7vn0 was solved by Y.Yuzugullu Karakus, S.Balci Unver, M.Zengin Karatas, G.Goc, A.R.Pearson, B.Yorke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.37 / 1.40
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.944, 120.786, 184.747, 90, 101.9, 90
R / Rfree (%) 16.1 / 18.2

Other elements in 7vn0:

The structure of Catpo Mutant - T188A also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Catpo Mutant - T188A (pdb code 7vn0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the Catpo Mutant - T188A, PDB code: 7vn0:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 1 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca702

b:12.9
occ:1.00
 O A:HOH1208 3.1 20.0 1.0
O A:HOH1195 3.2 17.7 1.0
ND1 A:HIS190 3.2 9.1 1.0
N A:SER192 3.2 7.5 1.0
OG A:SER192 3.4 8.0 1.0
CB A:SER192 3.7 7.3 1.0
CD A:ARG178 3.7 8.0 1.0
N A:ASP191 3.7 7.9 1.0
CB A:HIS190 3.7 8.1 1.0
CG A:ARG178 3.9 8.0 1.0
CG A:HIS190 3.9 8.1 1.0
CB A:ARG178 3.9 7.7 1.0
CA A:SER192 4.0 7.6 1.0
CB A:ASP191 4.1 9.3 1.0
C A:ASP191 4.2 8.4 1.0
CA A:ASP191 4.2 8.0 1.0
C A:HIS190 4.2 7.5 1.0
CE1 A:HIS190 4.3 9.2 1.0
O A:HOH1030 4.5 8.8 1.0
CA A:HIS190 4.6 8.2 1.0
CE1 B:TYR412 4.6 9.5 1.0
CA A:ARG178 4.8 6.8 1.0
NZ A:LYS489 4.8 18.0 1.0
NE A:ARG178 4.9 8.2 1.0
O A:HIS190 4.9 7.9 1.0
NH1 A:ARG178 4.9 11.2 1.0

Calcium binding site 2 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 2 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca703

b:14.1
occ:0.60
 O B:HOH1240 3.0 14.2 1.0
NH1 A:ARG449 3.1 10.2 1.0
N B:THR437 3.2 9.0 1.0
O B:HOH839 3.3 16.1 1.0
CD A:ARG449 3.7 9.0 1.0
CB B:THR437 3.8 8.9 1.0
CA B:PHE436 3.9 9.0 1.0
OG1 B:THR437 3.9 10.1 1.0
CG A:ARG449 4.0 8.5 1.0
O A:HOH1139 4.0 22.8 1.0
C B:PHE436 4.1 8.7 1.0
CA B:THR437 4.1 8.8 1.0
CB B:PHE436 4.1 9.0 1.0
CZ A:ARG449 4.1 9.6 1.0
NE A:ARG449 4.3 9.0 1.0
O B:HOH1121 4.4 11.8 1.0
CB A:ARG449 4.4 9.0 1.0
O B:THR437 4.5 9.7 1.0
O B:HOH1014 4.7 14.6 1.0
O A:HOH1254 4.8 16.3 1.0
C B:THR437 4.9 8.8 1.0
N A:ARG449 4.9 9.9 1.0
CD1 C:LEU49 4.9 8.4 1.0
O B:HOH934 4.9 10.7 1.0
O B:PHE435 5.0 9.5 1.0

Calcium binding site 3 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 3 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca704

b:11.9
occ:0.50
 O B:HOH903 1.9 17.1 1.0
O D:HOH913 2.0 17.4 1.0
O A:HOH1263 2.0 25.9 1.0
O B:HOH1257 2.0 26.2 1.0
O B:HOH1230 2.1 18.9 1.0
O C:HOH1253 2.1 19.7 1.0
O B:GLY378 4.1 13.7 1.0
O C:GLY378 4.1 12.7 1.0
O D:GLY378 4.1 11.9 1.0
O A:GLY378 4.2 14.4 1.0
O C:HOH1127 4.2 18.8 1.0
O A:HOH1057 4.3 18.7 1.0
O B:HOH1025 4.3 20.9 1.0
O D:HOH1072 4.3 20.3 1.0
O A:HOH1186 4.4 22.5 1.0
O C:HOH1181 4.5 20.8 1.0
O B:HOH1194 4.5 23.5 1.0
O D:HOH1140 4.6 23.1 1.0
CA B:GLY378 4.6 9.4 1.0
CA C:GLY378 4.7 9.4 1.0
CA D:GLY378 4.7 9.4 1.0
CA A:GLY378 4.7 9.5 1.0
C B:GLY378 4.8 10.3 1.0
C C:GLY378 4.9 9.5 1.0
C D:GLY378 4.9 10.0 1.0
C A:GLY378 4.9 11.5 1.0

Calcium binding site 4 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 4 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca702

b:14.3
occ:1.00
 O B:HOH1233 3.1 20.1 1.0
O A:HOH1201 3.1 17.7 1.0
ND1 B:HIS190 3.2 10.8 1.0
N B:SER192 3.3 9.4 1.0
OG B:SER192 3.4 9.8 1.0
CD B:ARG178 3.6 10.0 1.0
CB B:SER192 3.6 8.9 1.0
N B:ASP191 3.7 10.8 1.0
CB B:HIS190 3.9 10.5 1.0
CG B:ARG178 3.9 9.4 1.0
CB B:ARG178 4.0 9.2 1.0
CG B:HIS190 4.0 9.9 1.0
CA B:SER192 4.0 9.3 1.0
CB B:ASP191 4.1 11.5 1.0
C B:ASP191 4.2 10.0 1.0
CA B:ASP191 4.2 10.3 1.0
C B:HIS190 4.3 10.0 1.0
CE1 B:HIS190 4.3 10.4 1.0
CE1 A:TYR412 4.4 12.6 1.0
O B:HOH1028 4.5 10.2 1.0
CA B:HIS190 4.6 10.1 1.0
O B:HOH1224 4.8 25.2 1.0
CA B:ARG178 4.8 8.6 1.0
NE B:ARG178 4.9 10.8 1.0
NH1 B:ARG178 4.9 14.2 1.0
O B:HIS190 5.0 9.8 1.0
CG B:ASP191 5.0 13.0 1.0

Calcium binding site 5 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 5 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca703

b:18.9
occ:0.70
 OG B:SER255 2.9 18.5 1.0
O B:HOH1140 3.0 16.5 1.0
O B:HOH942 3.0 30.4 1.0
O B:HOH937 3.2 17.9 1.0
CD2 B:PHE476 3.7 18.2 1.0
CA B:GLY213 3.8 10.8 1.0
CB B:SER255 3.8 14.7 1.0
CE2 B:PHE476 4.1 20.1 1.0
N B:GLY213 4.1 11.4 1.0
CG2 B:VAL539 4.1 36.4 1.0
O B:HOH1008 4.3 17.2 1.0
CG B:GLU473 4.4 22.9 1.0
NH1 B:ARG689 4.6 20.3 1.0
OE2 B:GLU473 4.7 25.5 1.0
O B:LEU256 4.7 13.8 1.0
CG B:PHE476 4.8 16.6 1.0
CD1 B:ILE538 4.8 19.0 1.0
CB B:ILE538 4.8 18.8 1.0
CG2 B:ILE538 4.9 20.1 1.0
CB B:PHE476 5.0 15.8 1.0

Calcium binding site 6 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 6 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca702

b:10.0
occ:0.70
 O C:HOH1260 3.1 20.3 1.0
O C:HOH1219 3.2 18.2 1.0
ND1 C:HIS190 3.2 10.3 1.0
N C:SER192 3.2 10.3 1.0
OG C:SER192 3.4 10.1 1.0
CB C:SER192 3.6 10.2 1.0
N C:ASP191 3.7 11.2 1.0
CD C:ARG178 3.7 10.8 1.0
CB C:HIS190 3.8 10.5 1.0
CB C:ARG178 3.9 9.9 1.0
CG C:HIS190 3.9 9.2 1.0
CG C:ARG178 3.9 10.2 1.0
CA C:SER192 4.0 9.4 1.0
CB C:ASP191 4.1 11.3 1.0
C C:ASP191 4.2 10.5 1.0
CA C:ASP191 4.2 11.4 1.0
C C:HIS190 4.2 11.2 1.0
CE1 C:HIS190 4.3 10.5 1.0
O C:HOH999 4.4 9.3 1.0
CE1 D:TYR412 4.5 13.6 1.0
CA C:HIS190 4.6 11.4 1.0
O C:HOH1246 4.8 25.3 1.0
CA C:ARG178 4.8 9.3 1.0
NE C:ARG178 4.9 11.8 1.0
NH1 C:ARG178 4.9 16.2 1.0
O C:HIS190 4.9 10.9 1.0

Calcium binding site 7 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 7 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca703

b:14.2
occ:0.70
 O C:HOH1079 2.9 13.0 1.0
OG C:SER255 3.0 13.4 1.0
O C:HOH1003 3.2 14.1 1.0
O C:HOH1104 3.2 22.5 1.0
CD2 C:PHE476 3.8 13.5 1.0
CA C:GLY213 3.8 9.6 1.0
CB C:SER255 3.8 10.9 1.0
CG2 C:VAL539 4.1 26.1 1.0
N C:GLY213 4.1 10.1 1.0
CE2 C:PHE476 4.2 15.3 1.0
O C:HOH1026 4.4 12.7 1.0
OE2 C:GLU473 4.6 19.3 1.0
CG C:GLU473 4.6 19.1 1.0
NH1 C:ARG689 4.7 15.1 1.0
O C:LEU256 4.7 11.8 1.0
CB C:ILE538 4.8 14.8 1.0
CG2 C:ILE538 4.8 14.3 1.0
CG C:PHE476 4.9 11.9 1.0
CD1 C:ILE538 4.9 16.0 1.0

Calcium binding site 8 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 8 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca703

b:15.6
occ:1.00
 O C:HOH1220 3.1 19.2 1.0
O D:HOH1247 3.2 19.4 1.0
N D:SER192 3.2 10.1 1.0
ND1 D:HIS190 3.2 11.1 1.0
OG D:SER192 3.4 10.2 1.0
CB D:SER192 3.6 9.1 1.0
CD D:ARG178 3.7 10.3 1.0
N D:ASP191 3.7 11.1 1.0
CB D:HIS190 3.8 9.8 1.0
CG D:ARG178 3.9 9.8 1.0
CG D:HIS190 3.9 9.5 1.0
CA D:SER192 4.0 9.8 1.0
CB D:ARG178 4.0 9.2 1.0
CB D:ASP191 4.1 12.1 1.0
C D:ASP191 4.1 10.9 1.0
CA D:ASP191 4.2 11.7 1.0
C D:HIS190 4.2 9.9 1.0
CE1 D:HIS190 4.3 9.9 1.0
O D:HOH1017 4.5 11.5 1.0
CE1 C:TYR412 4.5 13.4 1.0
CA D:HIS190 4.6 10.1 1.0
O D:HOH1233 4.8 25.8 1.0
CA D:ARG178 4.8 9.1 1.0
NE D:ARG178 4.9 11.5 1.0
O D:HIS190 4.9 10.4 1.0
NH1 D:ARG178 5.0 13.7 1.0

Calcium binding site 9 out of 9 in 7vn0

Go back to Calcium Binding Sites List in 7vn0
Calcium binding site 9 out of 9 in the Catpo Mutant - T188A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Catpo Mutant - T188A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca704

b:15.0
occ:0.60
 OG D:SER255 2.9 18.1 1.0
O D:HOH1182 3.0 16.8 1.0
O D:HOH962 3.3 16.4 1.0
O D:HOH1125 3.3 24.9 1.0
CD2 D:PHE476 3.7 15.0 1.0
CB D:SER255 3.8 15.5 1.0
CA D:GLY213 3.8 10.5 1.0
N D:GLY213 4.2 11.4 1.0
CE2 D:PHE476 4.2 15.4 1.0
CG2 D:VAL539 4.3 31.5 1.0
O D:HOH1014 4.4 14.7 1.0
NH1 D:ARG689 4.6 16.8 1.0
CG D:GLU473 4.6 25.1 1.0
OE2 D:GLU473 4.7 23.6 1.0
O D:LEU256 4.7 11.9 1.0
CG D:PHE476 4.8 13.7 1.0
CD1 D:ILE538 4.8 19.3 1.0
CB D:ILE538 4.8 18.2 1.0
CG2 D:ILE538 4.9 18.3 1.0
CB D:PHE476 5.0 13.9 1.0

Reference:

Y.Yuzugullu Karakus, S.Balci Unver, M.Zengin Karatas, G.Goc, B.Yorke, A.R.Pearson. Catpo Mutant - T188A To Be Published.
Page generated: Thu Jul 10 02:00:45 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy