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Calcium in PDB 7x2n: Crystal Structure of Diels-Alderase PYCR1

Protein crystallography data

The structure of Crystal Structure of Diels-Alderase PYCR1, PDB code: 7x2n was solved by J.Zhou, J.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.83 / 1.72
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.321, 78.321, 164.001, 90, 90, 90
R / Rfree (%) 16.1 / 18.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Diels-Alderase PYCR1 (pdb code 7x2n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Diels-Alderase PYCR1, PDB code: 7x2n:

Calcium binding site 1 out of 1 in 7x2n

Go back to Calcium Binding Sites List in 7x2n
Calcium binding site 1 out of 1 in the Crystal Structure of Diels-Alderase PYCR1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Diels-Alderase PYCR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca606

b:28.0
occ:1.00
OE1 A:GLU48 2.3 24.8 1.0
OE1 A:GLN158 2.3 24.2 1.0
OD1 A:ASP275 2.4 23.5 1.0
O A:HOH838 2.4 27.9 1.0
OD1 A:ASN228 2.4 23.2 1.0
O A:HOH1027 2.5 25.0 1.0
O A:HOH712 2.7 21.6 1.0
CD A:GLN158 3.3 27.0 1.0
O A:HOH893 3.4 24.7 1.0
CG A:ASN228 3.4 23.8 1.0
CD A:GLU48 3.5 26.1 1.0
CG A:ASP275 3.6 23.8 1.0
ND2 A:ASN228 3.7 21.8 1.0
O A:HOH722 3.9 24.2 1.0
OD2 A:ASP275 4.0 26.6 1.0
NE2 A:GLN158 4.1 24.9 1.0
CG A:GLN158 4.1 21.6 1.0
OE2 A:GLU48 4.1 23.5 1.0
O A:HOH706 4.2 33.6 1.0
O A:ASP275 4.3 24.2 1.0
CG A:GLU48 4.6 21.5 1.0
C A:ASP275 4.7 24.3 1.0
O A:GLU48 4.8 23.4 1.0
CB A:ASP275 4.8 22.0 1.0
CB A:ASN228 4.8 22.3 1.0
O A:THR322 4.8 25.1 1.0
ND2 A:ASN49 4.8 22.1 1.0
CA A:ASP275 4.9 23.7 1.0

Reference:

J.Zhou, J.Lu. Crystal Structure of Hetero-Diels-Alderase PYCR1 To Be Published.
Page generated: Thu Jul 10 02:25:15 2025

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