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Calcium in PDB 7ynz: Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry

Other elements in 7ynz:

The structure of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry (pdb code 7ynz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry, PDB code: 7ynz:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7ynz

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Calcium binding site 1 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1102

b:20.0
occ:1.00
OD2 A:ASP367 2.4 20.0 1.0
O A:SER533 2.4 20.0 1.0
OE1 A:GLU535 2.4 20.0 1.0
O A:SER600 2.5 20.0 1.0
OE2 A:GLU535 2.5 20.0 1.0
O A:ARG514 2.5 20.0 1.0
CD A:GLU535 2.8 20.0 1.0
C A:SER533 3.5 20.0 1.0
CG A:ASP367 3.6 20.0 1.0
C A:ARG514 3.7 20.0 1.0
C A:SER600 3.7 20.0 1.0
OG A:SER600 3.9 20.0 1.0
CA A:SER533 4.0 20.0 1.0
OD1 A:ASP367 4.2 20.0 1.0
CB A:SER533 4.2 20.0 1.0
CG A:GLU535 4.3 20.0 1.0
CA A:SER600 4.4 20.0 1.0
CA A:SER515 4.4 20.0 1.0
N A:SER515 4.5 20.0 1.0
N A:ARG514 4.5 20.0 1.0
N A:ASN534 4.6 20.0 1.0
CA A:ARG514 4.7 20.0 1.0
CB A:SER600 4.7 20.0 1.0
CB A:ASP367 4.7 20.0 1.0
N A:ASP601 4.7 20.0 1.0
OH A:TYR537 4.9 20.0 1.0
C A:SER515 4.9 20.0 1.0
CA A:ASP601 4.9 20.0 1.0
N A:GLU535 4.9 20.0 1.0
OG A:SER533 5.0 20.0 1.0
CA A:ASN534 5.0 20.0 1.0
N A:PHE516 5.0 20.0 1.0

Calcium binding site 2 out of 8 in 7ynz

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Calcium binding site 2 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1103

b:20.0
occ:1.00
O A:ASP892 2.5 20.0 1.0
O A:GLN889 2.5 20.0 1.0
OD1 A:ASP895 2.5 20.0 1.0
OD1 G:ASN449 2.6 20.0 1.0
CG A:ASP895 3.2 20.0 1.0
OD2 A:ASP895 3.2 20.0 1.0
CG G:ASN449 3.4 20.0 1.0
ND2 G:ASN449 3.5 20.0 1.0
C A:GLN889 3.6 20.0 1.0
C A:ASP892 3.6 20.0 1.0
CB A:ASP897 3.9 20.0 1.0
OD2 A:ASP897 4.0 20.0 1.0
CA A:GLN889 4.1 20.0 1.0
O A:ASP895 4.1 20.0 1.0
CG A:ASP897 4.3 20.0 1.0
CA A:GLN893 4.3 20.0 1.0
N A:GLN893 4.4 20.0 1.0
CB A:GLN889 4.4 20.0 1.0
CB A:ASP895 4.5 20.0 1.0
C A:ASP895 4.6 20.0 1.0
CA A:ASP892 4.6 20.0 1.0
C A:GLN893 4.7 20.0 1.0
O A:GLN893 4.7 20.0 1.0
N A:ASP892 4.7 20.0 1.0
N A:PHE890 4.7 20.0 1.0
CA A:ASP897 4.8 20.0 1.0
N A:ASP897 4.8 20.0 1.0
CB G:ASN449 4.9 20.0 1.0
N A:ASP895 4.9 20.0 1.0
CA A:ASP895 4.9 20.0 1.0
O G:ASN449 4.9 20.0 1.0
CB A:ASP892 4.9 20.0 1.0

Calcium binding site 3 out of 8 in 7ynz

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Calcium binding site 3 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1104

b:20.0
occ:1.00
O C:GLN889 2.4 20.0 1.0
O C:ASP892 2.4 20.0 1.0
OD1 A:ASN449 2.5 20.0 1.0
OD1 C:ASP895 2.8 20.0 1.0
ND2 A:ASN449 3.1 20.0 1.0
CG A:ASN449 3.2 20.0 1.0
C C:GLN889 3.5 20.0 1.0
CG C:ASP895 3.5 20.0 1.0
C C:ASP892 3.6 20.0 1.0
OD2 C:ASP895 3.7 20.0 1.0
CA C:GLN889 4.0 20.0 1.0
O C:ASP895 4.1 20.0 1.0
CB C:ASP897 4.1 20.0 1.0
CB C:GLN889 4.4 20.0 1.0
N C:GLN893 4.4 20.0 1.0
CA C:GLN893 4.4 20.0 1.0
CA C:ASP892 4.5 20.0 1.0
N C:ASP892 4.5 20.0 1.0
CB A:ASN449 4.6 20.0 1.0
CG C:ASP897 4.6 20.0 1.0
N C:PHE890 4.7 20.0 1.0
C C:ASP895 4.7 20.0 1.0
OD2 C:ASP897 4.8 20.0 1.0
CB C:ASP892 4.8 20.0 1.0
CA C:ASP897 4.8 20.0 1.0
N C:ASP897 4.8 20.0 1.0
CB C:ASP895 4.9 20.0 1.0
C C:GLN893 5.0 20.0 1.0
O A:ASN449 5.0 20.0 1.0
CA C:PHE890 5.0 20.0 1.0

Calcium binding site 4 out of 8 in 7ynz

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Calcium binding site 4 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1102

b:20.0
occ:1.00
OD2 C:ASP367 2.3 20.0 1.0
O C:SER533 2.3 20.0 1.0
O C:ARG514 2.4 20.0 1.0
OE2 C:GLU535 2.5 20.0 1.0
OE1 C:GLU535 2.6 20.0 1.0
O C:SER600 2.6 20.0 1.0
CD C:GLU535 2.9 20.0 1.0
C C:SER533 3.4 20.0 1.0
CG C:ASP367 3.4 20.0 1.0
C C:ARG514 3.6 20.0 1.0
C C:SER600 3.8 20.0 1.0
OD1 C:ASP367 3.9 20.0 1.0
CA C:SER533 3.9 20.0 1.0
CB C:SER533 4.1 20.0 1.0
CA C:SER515 4.2 20.0 1.0
OG C:SER600 4.2 20.0 1.0
N C:SER515 4.3 20.0 1.0
CG C:GLU535 4.4 20.0 1.0
N C:ARG514 4.5 20.0 1.0
C C:SER515 4.5 20.0 1.0
N C:ASN534 4.6 20.0 1.0
CA C:SER600 4.6 20.0 1.0
N C:PHE516 4.6 20.0 1.0
CA C:ARG514 4.6 20.0 1.0
CB C:ASP367 4.7 20.0 1.0
N C:ASP601 4.8 20.0 1.0
OG C:SER533 4.9 20.0 1.0
CA C:ASN534 4.9 20.0 1.0
CA C:ASP601 5.0 20.0 1.0
N C:GLU535 5.0 20.0 1.0
CB C:SER600 5.0 20.0 1.0

Calcium binding site 5 out of 8 in 7ynz

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Calcium binding site 5 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1102

b:20.0
occ:1.00
O E:SER533 2.4 20.0 1.0
OD2 E:ASP367 2.4 20.0 1.0
O E:ARG514 2.5 20.0 1.0
O E:SER600 2.5 20.0 1.0
OE2 E:GLU535 3.2 20.0 1.0
CD E:GLU535 3.4 20.0 1.0
C E:SER533 3.5 20.0 1.0
CG E:ASP367 3.5 20.0 1.0
C E:SER600 3.6 20.0 1.0
C E:ARG514 3.7 20.0 1.0
OE1 E:GLU535 3.9 20.0 1.0
CG E:GLU535 3.9 20.0 1.0
CA E:SER533 4.1 20.0 1.0
CA E:SER600 4.2 20.0 1.0
CB E:ASP367 4.3 20.0 1.0
CA E:SER515 4.3 20.0 1.0
OD1 E:ASP367 4.4 20.0 1.0
N E:SER515 4.5 20.0 1.0
CB E:SER533 4.5 20.0 1.0
N E:ARG514 4.6 20.0 1.0
N E:ASN534 4.6 20.0 1.0
CB E:SER600 4.6 20.0 1.0
N E:ASP601 4.7 20.0 1.0
CA E:ARG514 4.7 20.0 1.0
CB E:GLU535 4.8 20.0 1.0
CA E:ASN534 4.8 20.0 1.0
C E:SER515 4.9 20.0 1.0
CA E:ASP601 4.9 20.0 1.0
OH E:TYR537 4.9 20.0 1.0
N E:PHE516 5.0 20.0 1.0

Calcium binding site 6 out of 8 in 7ynz

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Calcium binding site 6 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1103

b:20.0
occ:1.00
O E:GLN889 2.4 20.0 1.0
O E:ASP892 2.4 20.0 1.0
OD1 E:ASP895 2.4 20.0 1.0
OD1 C:ASN449 2.6 20.0 1.0
CG E:ASP895 3.1 20.0 1.0
OD2 E:ASP895 3.2 20.0 1.0
CG C:ASN449 3.4 20.0 1.0
C E:GLN889 3.5 20.0 1.0
C E:ASP892 3.6 20.0 1.0
ND2 C:ASN449 3.7 20.0 1.0
OD2 E:ASP897 3.9 20.0 1.0
CA E:GLN889 4.0 20.0 1.0
CB E:ASP897 4.0 20.0 1.0
O E:ASP895 4.1 20.0 1.0
CA E:GLN893 4.3 20.0 1.0
N E:GLN893 4.4 20.0 1.0
CB E:GLN889 4.4 20.0 1.0
CG E:ASP897 4.5 20.0 1.0
CA E:ASP892 4.6 20.0 1.0
CB E:ASP895 4.6 20.0 1.0
N E:ASP892 4.6 20.0 1.0
O E:GLN893 4.6 20.0 1.0
N E:PHE890 4.6 20.0 1.0
C E:GLN893 4.6 20.0 1.0
CB C:ASN449 4.7 20.0 1.0
C E:ASP895 4.7 20.0 1.0
N E:ASP895 4.9 20.0 1.0
CB E:ASP892 4.9 20.0 1.0
CA E:PHE890 4.9 20.0 1.0
CA E:ASP897 4.9 20.0 1.0
CA E:ASP895 5.0 20.0 1.0

Calcium binding site 7 out of 8 in 7ynz

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Calcium binding site 7 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1104

b:20.0
occ:1.00
O G:GLN889 2.5 20.0 1.0
OD1 E:ASN449 2.5 20.0 1.0
O G:ASP892 2.5 20.0 1.0
ND2 E:ASN449 3.2 20.0 1.0
CG E:ASN449 3.2 20.0 1.0
O G:ASP895 3.3 20.0 1.0
C G:GLN889 3.7 20.0 1.0
CB G:ASP895 3.7 20.0 1.0
C G:ASP892 3.8 20.0 1.0
C G:ASP895 4.0 20.0 1.0
CA G:ASP895 4.2 20.0 1.0
N G:ASP895 4.3 20.0 1.0
O G:GLN893 4.3 20.0 1.0
CA G:GLN889 4.3 20.0 1.0
CB G:ASP897 4.5 20.0 1.0
C G:GLN893 4.5 20.0 1.0
OD2 G:ASP897 4.5 20.0 1.0
CG G:ASP895 4.5 20.0 1.0
CA G:GLN893 4.6 20.0 1.0
CB G:GLN889 4.6 20.0 1.0
N G:GLN893 4.6 20.0 1.0
CB E:ASN449 4.7 20.0 1.0
CG G:ASP897 4.7 20.0 1.0
N G:ASP892 4.7 20.0 1.0
CA G:ASP892 4.7 20.0 1.0
N G:PHE890 4.7 20.0 1.0
OD2 G:ASP895 4.8 20.0 1.0
CA G:PHE890 4.9 20.0 1.0
O E:ASN449 5.0 20.0 1.0

Calcium binding site 8 out of 8 in 7ynz

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Calcium binding site 8 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1102

b:20.0
occ:1.00
OE2 G:GLU535 2.5 20.0 1.0
OD2 G:ASP367 2.5 20.0 1.0
O G:SER600 2.5 20.0 1.0
O G:SER533 2.6 20.0 1.0
CD G:GLU535 2.8 20.0 1.0
OE1 G:GLU535 2.9 20.0 1.0
O G:ARG514 3.2 20.0 1.0
C G:SER600 3.2 20.0 1.0
OG G:SER600 3.3 20.0 1.0
CG G:ASP367 3.4 20.0 1.0
CA G:SER600 3.8 20.0 1.0
C G:SER533 3.8 20.0 1.0
CB G:ASP367 3.9 20.0 1.0
CG G:GLU535 4.0 20.0 1.0
N G:ASP601 4.1 20.0 1.0
CB G:SER600 4.1 20.0 1.0
CA G:ASP601 4.3 20.0 1.0
C G:ARG514 4.4 20.0 1.0
OD1 G:ASP367 4.4 20.0 1.0
OH G:TYR537 4.5 20.0 1.0
CA G:SER533 4.6 20.0 1.0
CB G:GLU535 4.7 20.0 1.0
CB G:ASP601 4.8 20.0 1.0
N G:ASN534 4.8 20.0 1.0
CA G:ASN534 4.8 20.0 1.0
CB G:SER533 4.9 20.0 1.0
N G:GLU535 4.9 20.0 1.0
C G:ASN534 5.0 20.0 1.0

Reference:

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.
Page generated: Thu Jul 10 02:41:42 2025

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