Calcium in PDB 8ban: Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
Protein crystallography data
The structure of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25, PDB code: 8ban
was solved by
R.Schnell,
E.Szodorai,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
87.42 /
2.35
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.659,
121.068,
126.374,
90,
90,
90
|
|
R / Rfree (%)
|
19.4 /
24.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
(pdb code 8ban). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25, PDB code: 8ban:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 1 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:35.5
occ:1.00
|
OE1
|
C:GLN262
|
2.3
|
31.7
|
1.0
|
|
OD2
|
C:ASP254
|
2.3
|
37.6
|
1.0
|
|
OD1
|
C:ASN256
|
2.3
|
33.1
|
1.0
|
|
O
|
C:LYS260
|
2.3
|
39.2
|
1.0
|
|
OD2
|
C:ASP258
|
2.4
|
35.5
|
1.0
|
|
OE2
|
C:GLU265
|
2.5
|
28.8
|
1.0
|
|
OE1
|
C:GLU265
|
2.5
|
28.9
|
1.0
|
|
CD
|
C:GLU265
|
2.8
|
29.8
|
1.0
|
|
CG
|
C:ASP258
|
3.3
|
39.4
|
1.0
|
|
CG
|
C:ASN256
|
3.4
|
34.1
|
1.0
|
|
C
|
C:LYS260
|
3.4
|
34.5
|
1.0
|
|
CD
|
C:GLN262
|
3.4
|
32.5
|
1.0
|
|
CG
|
C:ASP254
|
3.5
|
40.3
|
1.0
|
|
OD1
|
C:ASP258
|
3.7
|
38.1
|
1.0
|
|
ND2
|
C:ASN256
|
3.9
|
34.2
|
1.0
|
|
NE2
|
C:GLN262
|
4.0
|
34.1
|
1.0
|
|
N
|
C:GLN262
|
4.2
|
33.3
|
1.0
|
|
N
|
C:LYS260
|
4.2
|
32.7
|
1.0
|
|
N
|
C:ASP258
|
4.3
|
41.6
|
1.0
|
|
N
|
C:ILE261
|
4.3
|
32.9
|
1.0
|
|
CG
|
C:GLU265
|
4.3
|
32.3
|
1.0
|
|
CA
|
C:LYS260
|
4.3
|
35.9
|
1.0
|
|
CA
|
C:ASP254
|
4.3
|
33.8
|
1.0
|
|
OD1
|
C:ASP254
|
4.4
|
40.5
|
1.0
|
|
O
|
C:HOH413
|
4.4
|
34.4
|
1.0
|
|
N
|
C:ASN256
|
4.4
|
35.5
|
1.0
|
|
CA
|
C:ILE261
|
4.4
|
32.8
|
1.0
|
|
CB
|
C:ASP258
|
4.5
|
35.6
|
1.0
|
|
CB
|
C:ASP254
|
4.5
|
36.6
|
1.0
|
|
C
|
C:ASP254
|
4.5
|
30.4
|
1.0
|
|
CB
|
C:ASN256
|
4.6
|
33.1
|
1.0
|
|
N
|
C:VAL255
|
4.6
|
30.7
|
1.0
|
|
CG
|
C:GLN262
|
4.6
|
32.5
|
1.0
|
|
N
|
C:LYS257
|
4.7
|
40.2
|
1.0
|
|
CB
|
C:LYS260
|
4.8
|
32.2
|
1.0
|
|
CA
|
C:ASP258
|
4.8
|
37.6
|
1.0
|
|
C
|
C:ILE261
|
4.8
|
33.6
|
1.0
|
|
CB
|
C:GLN262
|
4.8
|
31.1
|
1.0
|
|
CA
|
C:ASN256
|
4.8
|
35.6
|
1.0
|
|
N
|
C:GLY259
|
4.9
|
37.0
|
1.0
|
|
C
|
C:ASN256
|
4.9
|
35.2
|
1.0
|
|
Calcium binding site 2 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 2 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca302
b:46.6
occ:1.00
|
OD1
|
C:ASN164
|
2.1
|
49.9
|
1.0
|
|
O
|
C:HOH407
|
2.3
|
42.4
|
1.0
|
|
O
|
C:ARG168
|
2.3
|
35.7
|
1.0
|
|
OD2
|
C:ASP166
|
2.4
|
47.8
|
1.0
|
|
OD1
|
C:ASP162
|
2.4
|
47.8
|
1.0
|
|
CG
|
C:ASN164
|
3.2
|
55.8
|
1.0
|
|
CG
|
C:ASP166
|
3.2
|
45.5
|
1.0
|
|
CG
|
C:ASP162
|
3.4
|
43.6
|
1.0
|
|
C
|
C:ARG168
|
3.5
|
38.2
|
1.0
|
|
ND2
|
C:ASN164
|
3.6
|
63.5
|
1.0
|
|
OD1
|
C:ASP166
|
3.7
|
48.4
|
1.0
|
|
N
|
C:ARG168
|
4.0
|
43.2
|
1.0
|
|
OD2
|
C:ASP173
|
4.0
|
38.2
|
1.0
|
|
CA
|
C:ARG168
|
4.1
|
42.0
|
1.0
|
|
OD2
|
C:ASP162
|
4.2
|
47.0
|
1.0
|
|
N
|
C:ASP166
|
4.3
|
46.2
|
1.0
|
|
CA
|
C:ASP162
|
4.3
|
41.7
|
1.0
|
|
CB
|
C:ARG168
|
4.3
|
44.2
|
1.0
|
|
CB
|
C:ASP162
|
4.3
|
40.4
|
1.0
|
|
CB
|
C:ASP166
|
4.4
|
43.6
|
1.0
|
|
N
|
C:ASN164
|
4.4
|
58.5
|
1.0
|
|
N
|
C:LEU169
|
4.5
|
34.9
|
1.0
|
|
CB
|
C:ASN164
|
4.5
|
56.5
|
1.0
|
|
C
|
C:ASP162
|
4.5
|
42.9
|
1.0
|
|
N
|
C:LYS163
|
4.6
|
51.4
|
1.0
|
|
N
|
C:LYS165
|
4.6
|
57.1
|
1.0
|
|
CA
|
C:LEU169
|
4.7
|
35.5
|
1.0
|
|
CA
|
C:ASP166
|
4.7
|
42.7
|
1.0
|
|
C
|
C:ASN164
|
4.8
|
57.9
|
1.0
|
|
CA
|
C:ASN164
|
4.8
|
59.1
|
1.0
|
|
N
|
C:ASP170
|
4.8
|
39.2
|
1.0
|
|
N
|
C:GLY167
|
4.8
|
39.7
|
1.0
|
|
C
|
C:ASP166
|
4.9
|
39.2
|
1.0
|
|
C
|
C:LEU169
|
5.0
|
35.0
|
1.0
|
|
Calcium binding site 3 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 3 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca303
b:62.7
occ:1.00
|
OD1
|
C:ASP210
|
2.2
|
34.1
|
1.0
|
|
O
|
C:ALA216
|
2.3
|
36.2
|
1.0
|
|
OE2
|
C:GLU218
|
2.4
|
66.9
|
1.0
|
|
OE1
|
C:GLU221
|
2.6
|
41.2
|
1.0
|
|
OG1
|
C:THR214
|
2.6
|
46.5
|
1.0
|
|
OG
|
C:SER212
|
2.6
|
41.1
|
1.0
|
|
CG
|
C:ASP210
|
3.2
|
42.6
|
1.0
|
|
CD
|
C:GLU221
|
3.3
|
39.0
|
1.0
|
|
OE2
|
C:GLU221
|
3.4
|
44.8
|
1.0
|
|
CD
|
C:GLU218
|
3.5
|
62.1
|
1.0
|
|
C
|
C:ALA216
|
3.5
|
38.8
|
1.0
|
|
N
|
C:THR214
|
3.6
|
40.9
|
1.0
|
|
CB
|
C:THR214
|
3.7
|
43.4
|
1.0
|
|
CG2
|
C:THR214
|
3.9
|
40.8
|
1.0
|
|
OD2
|
C:ASP210
|
4.0
|
40.6
|
1.0
|
|
CB
|
C:SER212
|
4.0
|
42.5
|
1.0
|
|
OE1
|
C:GLU218
|
4.0
|
60.5
|
1.0
|
|
N
|
C:LYS213
|
4.1
|
39.9
|
1.0
|
|
CA
|
C:ASP210
|
4.1
|
41.5
|
1.0
|
|
N
|
C:ALA216
|
4.1
|
38.7
|
1.0
|
|
CA
|
C:THR214
|
4.2
|
39.5
|
1.0
|
|
CB
|
C:ASP210
|
4.2
|
45.2
|
1.0
|
|
CA
|
C:LEU217
|
4.4
|
33.9
|
1.0
|
|
N
|
C:LEU217
|
4.4
|
36.4
|
1.0
|
|
C
|
C:SER212
|
4.4
|
41.4
|
1.0
|
|
C
|
C:ASP210
|
4.4
|
43.2
|
1.0
|
|
N
|
C:SER212
|
4.4
|
35.7
|
1.0
|
|
CA
|
C:ALA216
|
4.5
|
40.5
|
1.0
|
|
N
|
C:GLU218
|
4.5
|
36.7
|
1.0
|
|
CA
|
C:SER212
|
4.5
|
40.6
|
1.0
|
|
C
|
C:LYS213
|
4.7
|
40.2
|
1.0
|
|
CG
|
C:GLU218
|
4.7
|
53.9
|
1.0
|
|
C
|
C:THR214
|
4.7
|
42.6
|
1.0
|
|
N
|
C:GLY215
|
4.7
|
40.0
|
1.0
|
|
CA
|
C:LYS213
|
4.8
|
38.6
|
1.0
|
|
CG
|
C:GLU221
|
4.8
|
39.4
|
1.0
|
|
O
|
C:ASP210
|
4.8
|
38.4
|
1.0
|
|
C
|
C:LEU217
|
4.8
|
35.7
|
1.0
|
|
N
|
C:VAL211
|
4.9
|
42.3
|
1.0
|
|
Calcium binding site 4 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 4 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca304
b:42.6
occ:1.00
|
O
|
C:HOH426
|
2.1
|
50.3
|
1.0
|
|
OD1
|
C:ASP118
|
2.3
|
39.7
|
1.0
|
|
O
|
C:PHE124
|
2.3
|
39.0
|
1.0
|
|
OG
|
C:SER122
|
2.3
|
56.5
|
1.0
|
|
OD1
|
C:ASP120
|
2.5
|
51.3
|
1.0
|
|
OE1
|
C:GLU129
|
2.5
|
42.6
|
1.0
|
|
OE2
|
C:GLU129
|
2.9
|
37.6
|
1.0
|
|
CD
|
C:GLU129
|
3.1
|
40.1
|
1.0
|
|
CB
|
C:SER122
|
3.2
|
48.8
|
1.0
|
|
CG
|
C:ASP120
|
3.4
|
51.7
|
1.0
|
|
CG
|
C:ASP118
|
3.4
|
43.1
|
1.0
|
|
C
|
C:PHE124
|
3.5
|
38.6
|
1.0
|
|
OD2
|
C:ASP120
|
3.5
|
52.5
|
1.0
|
|
N
|
C:SER122
|
3.7
|
49.1
|
1.0
|
|
CA
|
C:SER122
|
4.0
|
47.3
|
1.0
|
|
CA
|
C:ASP118
|
4.0
|
43.8
|
1.0
|
|
CB
|
C:ASP118
|
4.2
|
41.2
|
1.0
|
|
N
|
C:PHE124
|
4.3
|
36.8
|
1.0
|
|
OD2
|
C:ASP118
|
4.3
|
41.1
|
1.0
|
|
CA
|
C:ILE125
|
4.4
|
36.0
|
1.0
|
|
N
|
C:ILE125
|
4.4
|
36.9
|
1.0
|
|
C
|
C:ASP118
|
4.4
|
44.7
|
1.0
|
|
CA
|
C:PHE124
|
4.4
|
39.1
|
1.0
|
|
CG
|
C:GLU129
|
4.5
|
42.9
|
1.0
|
|
N
|
C:SER126
|
4.6
|
37.2
|
1.0
|
|
N
|
C:ALA119
|
4.7
|
46.2
|
1.0
|
|
N
|
C:ASP120
|
4.7
|
46.1
|
1.0
|
|
CB
|
C:ASP120
|
4.7
|
48.5
|
1.0
|
|
N
|
C:GLY123
|
4.7
|
43.9
|
1.0
|
|
C
|
C:SER122
|
4.7
|
47.9
|
1.0
|
|
N
|
C:SER121
|
4.8
|
54.5
|
1.0
|
|
C
|
C:SER121
|
4.9
|
47.7
|
1.0
|
|
CB
|
C:PHE124
|
4.9
|
43.0
|
1.0
|
|
O
|
C:ASP118
|
4.9
|
41.8
|
1.0
|
|
C
|
C:ILE125
|
5.0
|
36.1
|
1.0
|
|
C
|
C:ASP120
|
5.0
|
53.4
|
1.0
|
|
Calcium binding site 5 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 5 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca301
b:33.9
occ:1.00
|
OE1
|
D:GLN262
|
2.3
|
35.4
|
1.0
|
|
OD2
|
D:ASP254
|
2.3
|
31.2
|
1.0
|
|
O
|
D:LYS260
|
2.4
|
31.5
|
1.0
|
|
OD1
|
D:ASN256
|
2.4
|
35.3
|
1.0
|
|
OE1
|
D:GLU265
|
2.5
|
32.2
|
1.0
|
|
OD2
|
D:ASP258
|
2.5
|
29.3
|
1.0
|
|
OE2
|
D:GLU265
|
2.7
|
31.3
|
1.0
|
|
CD
|
D:GLU265
|
2.9
|
32.6
|
1.0
|
|
CG
|
D:ASN256
|
3.4
|
35.5
|
1.0
|
|
CG
|
D:ASP258
|
3.4
|
31.6
|
1.0
|
|
CD
|
D:GLN262
|
3.4
|
32.7
|
1.0
|
|
CG
|
D:ASP254
|
3.5
|
33.8
|
1.0
|
|
C
|
D:LYS260
|
3.5
|
31.8
|
1.0
|
|
OD1
|
D:ASP258
|
3.9
|
34.2
|
1.0
|
|
ND2
|
D:ASN256
|
3.9
|
32.0
|
1.0
|
|
NE2
|
D:GLN262
|
4.0
|
33.8
|
1.0
|
|
N
|
D:GLN262
|
4.2
|
36.0
|
1.0
|
|
OD1
|
D:ASP254
|
4.2
|
36.7
|
1.0
|
|
N
|
D:LYS260
|
4.3
|
32.2
|
1.0
|
|
N
|
D:ASP258
|
4.3
|
30.1
|
1.0
|
|
N
|
D:ILE261
|
4.4
|
32.0
|
1.0
|
|
CG
|
D:GLU265
|
4.4
|
34.1
|
1.0
|
|
CA
|
D:ILE261
|
4.4
|
31.1
|
1.0
|
|
CA
|
D:LYS260
|
4.4
|
32.9
|
1.0
|
|
N
|
D:ASN256
|
4.5
|
33.4
|
1.0
|
|
CA
|
D:ASP254
|
4.5
|
32.6
|
1.0
|
|
N
|
D:LYS257
|
4.5
|
35.1
|
1.0
|
|
CB
|
D:ASP254
|
4.6
|
31.5
|
1.0
|
|
O
|
D:HOH432
|
4.6
|
30.7
|
1.0
|
|
CB
|
D:ASP258
|
4.6
|
28.1
|
1.0
|
|
N
|
D:VAL255
|
4.7
|
35.5
|
1.0
|
|
CG
|
D:GLN262
|
4.7
|
34.2
|
1.0
|
|
CB
|
D:ASN256
|
4.7
|
34.2
|
1.0
|
|
C
|
D:ASP254
|
4.7
|
33.7
|
1.0
|
|
CB
|
D:GLN262
|
4.8
|
34.9
|
1.0
|
|
N
|
D:GLY259
|
4.8
|
32.8
|
1.0
|
|
C
|
D:ASN256
|
4.8
|
35.4
|
1.0
|
|
CA
|
D:ASN256
|
4.8
|
32.6
|
1.0
|
|
C
|
D:ILE261
|
4.9
|
35.3
|
1.0
|
|
CA
|
D:ASP258
|
4.9
|
29.0
|
1.0
|
|
CB
|
D:LYS260
|
4.9
|
38.3
|
1.0
|
|
Calcium binding site 6 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 6 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca302
b:51.6
occ:1.00
|
OD1
|
D:ASN164
|
2.1
|
50.9
|
1.0
|
|
OD1
|
D:ASP162
|
2.2
|
42.7
|
1.0
|
|
O
|
D:ARG168
|
2.4
|
46.8
|
1.0
|
|
OD2
|
D:ASP166
|
2.5
|
43.2
|
1.0
|
|
CG
|
D:ASP166
|
3.1
|
49.7
|
1.0
|
|
CG
|
D:ASN164
|
3.3
|
49.9
|
1.0
|
|
CG
|
D:ASP162
|
3.4
|
45.0
|
1.0
|
|
OD1
|
D:ASP166
|
3.4
|
55.7
|
1.0
|
|
C
|
D:ARG168
|
3.5
|
51.0
|
1.0
|
|
ND2
|
D:ASN164
|
3.8
|
52.6
|
1.0
|
|
N
|
D:ARG168
|
4.1
|
52.2
|
1.0
|
|
CB
|
D:ASP166
|
4.1
|
50.8
|
1.0
|
|
N
|
D:ASP166
|
4.1
|
50.8
|
1.0
|
|
OD2
|
D:ASP173
|
4.2
|
46.9
|
1.0
|
|
OD2
|
D:ASP162
|
4.2
|
41.2
|
1.0
|
|
CA
|
D:ASP162
|
4.2
|
45.5
|
1.0
|
|
N
|
D:ASN164
|
4.2
|
59.8
|
1.0
|
|
CB
|
D:ASP162
|
4.3
|
42.2
|
1.0
|
|
CA
|
D:ARG168
|
4.3
|
52.1
|
1.0
|
|
C
|
D:ASP162
|
4.3
|
49.5
|
1.0
|
|
N
|
D:LYS163
|
4.4
|
58.1
|
1.0
|
|
N
|
D:LEU169
|
4.5
|
50.4
|
1.0
|
|
N
|
D:LYS165
|
4.5
|
63.1
|
1.0
|
|
CB
|
D:ASN164
|
4.5
|
50.7
|
1.0
|
|
CA
|
D:ASP166
|
4.6
|
47.4
|
1.0
|
|
CA
|
D:LEU169
|
4.6
|
48.0
|
1.0
|
|
CA
|
D:ASN164
|
4.7
|
55.2
|
1.0
|
|
C
|
D:ASN164
|
4.7
|
60.3
|
1.0
|
|
N
|
D:GLY167
|
4.8
|
42.7
|
1.0
|
|
O
|
D:ASP162
|
4.8
|
54.8
|
1.0
|
|
N
|
D:ASP170
|
4.9
|
44.6
|
1.0
|
|
CB
|
D:ARG168
|
4.9
|
54.3
|
1.0
|
|
C
|
D:ASP166
|
4.9
|
40.2
|
1.0
|
|
Calcium binding site 7 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 7 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca303
b:50.3
occ:1.00
|
OE2
|
D:GLU218
|
2.1
|
50.2
|
1.0
|
|
OD1
|
D:ASP210
|
2.3
|
30.4
|
1.0
|
|
O
|
D:ALA216
|
2.3
|
34.2
|
1.0
|
|
OG
|
D:SER212
|
2.6
|
40.9
|
1.0
|
|
OG1
|
D:THR214
|
2.6
|
38.0
|
1.0
|
|
OE1
|
D:GLU221
|
2.6
|
34.4
|
1.0
|
|
CD
|
D:GLU218
|
3.2
|
47.4
|
1.0
|
|
OE2
|
D:GLU221
|
3.2
|
38.1
|
1.0
|
|
CD
|
D:GLU221
|
3.3
|
34.6
|
1.0
|
|
CG
|
D:ASP210
|
3.4
|
34.4
|
1.0
|
|
C
|
D:ALA216
|
3.5
|
35.7
|
1.0
|
|
CB
|
D:THR214
|
3.6
|
39.9
|
1.0
|
|
OE1
|
D:GLU218
|
3.6
|
42.3
|
1.0
|
|
N
|
D:THR214
|
3.7
|
41.9
|
1.0
|
|
CG2
|
D:THR214
|
3.7
|
38.3
|
1.0
|
|
CB
|
D:SER212
|
3.9
|
38.4
|
1.0
|
|
N
|
D:LYS213
|
4.1
|
42.9
|
1.0
|
|
CA
|
D:THR214
|
4.2
|
41.4
|
1.0
|
|
OD2
|
D:ASP210
|
4.2
|
38.0
|
1.0
|
|
CA
|
D:ASP210
|
4.2
|
32.4
|
1.0
|
|
N
|
D:ALA216
|
4.2
|
34.7
|
1.0
|
|
N
|
D:SER212
|
4.2
|
36.2
|
1.0
|
|
C
|
D:SER212
|
4.3
|
42.4
|
1.0
|
|
CB
|
D:ASP210
|
4.3
|
34.7
|
1.0
|
|
CA
|
D:SER212
|
4.3
|
40.7
|
1.0
|
|
CG
|
D:GLU218
|
4.4
|
47.0
|
1.0
|
|
N
|
D:LEU217
|
4.4
|
35.2
|
1.0
|
|
CA
|
D:LEU217
|
4.5
|
35.5
|
1.0
|
|
N
|
D:GLU218
|
4.5
|
34.1
|
1.0
|
|
CA
|
D:ALA216
|
4.5
|
36.0
|
1.0
|
|
C
|
D:ASP210
|
4.6
|
31.2
|
1.0
|
|
C
|
D:LYS213
|
4.7
|
40.9
|
1.0
|
|
N
|
D:GLY215
|
4.7
|
37.0
|
1.0
|
|
CG
|
D:GLU221
|
4.8
|
30.9
|
1.0
|
|
C
|
D:THR214
|
4.8
|
38.4
|
1.0
|
|
CA
|
D:LYS213
|
4.8
|
45.7
|
1.0
|
|
C
|
D:LEU217
|
4.9
|
36.6
|
1.0
|
|
N
|
D:VAL211
|
4.9
|
33.5
|
1.0
|
|
O
|
D:SER212
|
4.9
|
43.1
|
1.0
|
|
Calcium binding site 8 out
of 8 in 8ban
Go back to
Calcium Binding Sites List in 8ban
Calcium binding site 8 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Secretagogin (Mouse) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca304
b:45.2
occ:1.00
|
OG
|
D:SER122
|
2.1
|
52.5
|
1.0
|
|
OD1
|
D:ASP118
|
2.2
|
46.3
|
1.0
|
|
O
|
D:HOH404
|
2.3
|
53.7
|
1.0
|
|
OD1
|
D:ASP120
|
2.3
|
52.8
|
1.0
|
|
OE1
|
D:GLU129
|
2.4
|
36.7
|
1.0
|
|
O
|
D:PHE124
|
2.4
|
36.6
|
1.0
|
|
OE2
|
D:GLU129
|
2.4
|
38.4
|
1.0
|
|
CD
|
D:GLU129
|
2.7
|
44.6
|
1.0
|
|
CG
|
D:ASP120
|
3.2
|
50.0
|
1.0
|
|
CB
|
D:SER122
|
3.2
|
49.8
|
1.0
|
|
CG
|
D:ASP118
|
3.3
|
45.6
|
1.0
|
|
OD2
|
D:ASP120
|
3.4
|
52.5
|
1.0
|
|
C
|
D:PHE124
|
3.6
|
37.8
|
1.0
|
|
N
|
D:SER122
|
3.9
|
47.6
|
1.0
|
|
CA
|
D:ASP118
|
3.9
|
44.2
|
1.0
|
|
CB
|
D:ASP118
|
4.2
|
44.2
|
1.0
|
|
OD2
|
D:ASP118
|
4.2
|
38.7
|
1.0
|
|
CA
|
D:SER122
|
4.2
|
45.7
|
1.0
|
|
NH2
|
D:ARG168
|
4.2
|
59.3
|
1.0
|
|
CG
|
D:GLU129
|
4.2
|
47.0
|
1.0
|
|
C
|
D:ASP118
|
4.3
|
46.0
|
1.0
|
|
CA
|
D:ILE125
|
4.4
|
39.3
|
1.0
|
|
N
|
D:ILE125
|
4.4
|
36.6
|
1.0
|
|
N
|
D:PHE124
|
4.4
|
40.0
|
1.0
|
|
N
|
D:SER126
|
4.5
|
41.3
|
1.0
|
|
N
|
D:ASP120
|
4.6
|
47.1
|
1.0
|
|
CB
|
D:ASP120
|
4.6
|
48.4
|
1.0
|
|
CA
|
D:PHE124
|
4.6
|
38.2
|
1.0
|
|
N
|
D:ALA119
|
4.6
|
44.4
|
1.0
|
|
O
|
D:ASP118
|
4.7
|
45.2
|
1.0
|
|
CZ
|
D:ARG168
|
4.8
|
61.4
|
1.0
|
|
N
|
D:SER121
|
4.9
|
52.9
|
1.0
|
|
N
|
D:GLY123
|
4.9
|
42.6
|
1.0
|
|
C
|
D:ILE125
|
5.0
|
39.6
|
1.0
|
|
CA
|
D:ASP120
|
5.0
|
50.9
|
1.0
|
|
O
|
D:HOH459
|
5.0
|
55.3
|
1.0
|
|
C
|
D:SER122
|
5.0
|
47.8
|
1.0
|
|
Reference:
R.Schnell,
E.Szodorai.
Calmodulin Type Regulator (Mouse) with Peptide Ligand To Be Published.
Page generated: Thu Jul 10 03:25:23 2025
|
