Calcium in PDB 8bav: Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
Protein crystallography data
The structure of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25, PDB code: 8bav
was solved by
R.Schnell,
E.Szodorai,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
41.36 /
2.30
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.544,
120.439,
124.066,
90,
90,
90
|
|
R / Rfree (%)
|
18.8 /
26.2
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
(pdb code 8bav). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Secretagogin (Human) in Complex with Its Target Peptide From Snap-25, PDB code: 8bav:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 1 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:35.5
occ:1.00
|
OD1
|
C:ASP118
|
2.3
|
35.2
|
1.0
|
|
OD1
|
C:ASP120
|
2.3
|
34.4
|
1.0
|
|
OG
|
C:SER122
|
2.4
|
32.9
|
1.0
|
|
O
|
C:PHE124
|
2.5
|
31.0
|
1.0
|
|
OE2
|
C:GLU129
|
2.6
|
33.3
|
1.0
|
|
OE1
|
C:GLU129
|
2.6
|
29.7
|
1.0
|
|
CD
|
C:GLU129
|
2.9
|
32.8
|
1.0
|
|
CG
|
C:ASP120
|
3.2
|
37.2
|
1.0
|
|
OD2
|
C:ASP120
|
3.3
|
36.6
|
1.0
|
|
CB
|
C:SER122
|
3.4
|
33.6
|
1.0
|
|
CG
|
C:ASP118
|
3.5
|
35.4
|
1.0
|
|
C
|
C:PHE124
|
3.7
|
32.6
|
1.0
|
|
N
|
C:SER122
|
3.8
|
32.3
|
1.0
|
|
CA
|
C:ASP118
|
4.0
|
34.1
|
1.0
|
|
CB
|
C:ASP118
|
4.2
|
33.8
|
1.0
|
|
CA
|
C:SER122
|
4.2
|
32.2
|
1.0
|
|
C
|
C:ASP118
|
4.3
|
35.7
|
1.0
|
|
N
|
C:PHE124
|
4.4
|
35.2
|
1.0
|
|
OD2
|
C:ASP118
|
4.4
|
36.5
|
1.0
|
|
CG
|
C:GLU129
|
4.5
|
33.4
|
1.0
|
|
CA
|
C:ILE125
|
4.5
|
31.3
|
1.0
|
|
N
|
C:SER126
|
4.5
|
29.9
|
1.0
|
|
N
|
C:ALA119
|
4.5
|
34.2
|
1.0
|
|
N
|
C:ILE125
|
4.5
|
30.9
|
1.0
|
|
CB
|
C:ASP120
|
4.6
|
35.9
|
1.0
|
|
N
|
C:SER121
|
4.6
|
36.1
|
1.0
|
|
N
|
C:ASP120
|
4.7
|
37.3
|
1.0
|
|
CA
|
C:PHE124
|
4.7
|
35.8
|
1.0
|
|
N
|
C:GLY123
|
4.8
|
29.7
|
1.0
|
|
CD1
|
C:PHE124
|
4.8
|
48.0
|
1.0
|
|
C
|
C:SER122
|
4.8
|
30.1
|
1.0
|
|
O
|
C:ASP118
|
4.8
|
38.4
|
1.0
|
|
CE1
|
C:PHE124
|
4.9
|
47.7
|
1.0
|
|
C
|
C:ASP120
|
4.9
|
37.5
|
1.0
|
|
CG
|
C:PHE124
|
4.9
|
44.5
|
1.0
|
|
C
|
C:SER121
|
5.0
|
33.0
|
1.0
|
|
CA
|
C:ASP120
|
5.0
|
35.3
|
1.0
|
|
C
|
C:ILE125
|
5.0
|
29.5
|
1.0
|
|
Calcium binding site 2 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 2 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca302
b:45.8
occ:1.00
|
O
|
C:HOH431
|
2.2
|
45.7
|
1.0
|
|
OD1
|
C:ASP162
|
2.2
|
36.1
|
1.0
|
|
O
|
C:ARG168
|
2.3
|
30.4
|
1.0
|
|
OD1
|
C:ASN164
|
2.3
|
37.6
|
1.0
|
|
OD1
|
C:ASP166
|
2.4
|
41.5
|
1.0
|
|
CG
|
C:ASP166
|
3.1
|
43.9
|
1.0
|
|
CG
|
C:ASN164
|
3.3
|
43.7
|
1.0
|
|
OD2
|
C:ASP166
|
3.3
|
44.0
|
1.0
|
|
CG
|
C:ASP162
|
3.3
|
35.5
|
1.0
|
|
C
|
C:ARG168
|
3.4
|
35.1
|
1.0
|
|
ND2
|
C:ASN164
|
3.6
|
46.2
|
1.0
|
|
N
|
C:ARG168
|
3.9
|
40.4
|
1.0
|
|
CA
|
C:ARG168
|
4.0
|
39.8
|
1.0
|
|
OD2
|
C:ASP162
|
4.0
|
35.5
|
1.0
|
|
CB
|
C:ARG168
|
4.1
|
45.8
|
1.0
|
|
N
|
C:ASP166
|
4.2
|
42.2
|
1.0
|
|
OD2
|
C:ASP173
|
4.2
|
37.1
|
1.0
|
|
CA
|
C:ASP162
|
4.3
|
37.3
|
1.0
|
|
CB
|
C:ASP162
|
4.3
|
34.7
|
1.0
|
|
CB
|
C:ASP166
|
4.5
|
45.5
|
1.0
|
|
N
|
C:LEU169
|
4.5
|
30.9
|
1.0
|
|
C
|
C:ASP162
|
4.6
|
39.4
|
1.0
|
|
N
|
C:LYS165
|
4.6
|
43.8
|
1.0
|
|
N
|
C:ASN164
|
4.6
|
42.0
|
1.0
|
|
CB
|
C:ASN164
|
4.7
|
46.7
|
1.0
|
|
N
|
C:ARG163
|
4.7
|
42.4
|
1.0
|
|
OD2
|
C:ASP170
|
4.7
|
65.1
|
1.0
|
|
CA
|
C:ASP166
|
4.8
|
43.8
|
1.0
|
|
N
|
C:GLY167
|
4.8
|
39.3
|
1.0
|
|
CA
|
C:LEU169
|
4.8
|
31.1
|
1.0
|
|
C
|
C:ASN164
|
4.9
|
44.0
|
1.0
|
|
CA
|
C:ASN164
|
4.9
|
44.8
|
1.0
|
|
C
|
C:ASP166
|
5.0
|
40.5
|
1.0
|
|
Calcium binding site 3 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 3 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca303
b:54.9
occ:1.00
|
OD2
|
C:ASP210
|
2.3
|
34.9
|
1.0
|
|
O
|
C:ALA216
|
2.3
|
39.1
|
1.0
|
|
OE1
|
C:GLU221
|
2.4
|
36.9
|
1.0
|
|
OG
|
C:SER212
|
2.5
|
37.8
|
1.0
|
|
OG1
|
C:THR214
|
2.6
|
37.7
|
1.0
|
|
OE2
|
C:GLU218
|
2.8
|
51.8
|
1.0
|
|
CD
|
C:GLU221
|
3.2
|
37.6
|
1.0
|
|
CG
|
C:ASP210
|
3.4
|
36.0
|
1.0
|
|
OE2
|
C:GLU221
|
3.4
|
40.3
|
1.0
|
|
C
|
C:ALA216
|
3.5
|
35.0
|
1.0
|
|
CB
|
C:THR214
|
3.7
|
37.4
|
1.0
|
|
N
|
C:THR214
|
3.8
|
37.4
|
1.0
|
|
CD
|
C:GLU218
|
3.8
|
47.3
|
1.0
|
|
CB
|
C:SER212
|
3.9
|
36.8
|
1.0
|
|
CG2
|
C:THR214
|
3.9
|
36.2
|
1.0
|
|
N
|
C:LYS213
|
4.2
|
41.0
|
1.0
|
|
N
|
C:ALA216
|
4.2
|
32.6
|
1.0
|
|
CA
|
C:ASP210
|
4.2
|
34.6
|
1.0
|
|
OD1
|
C:ASP210
|
4.2
|
34.6
|
1.0
|
|
CB
|
C:ASP210
|
4.3
|
35.3
|
1.0
|
|
OE1
|
C:GLU218
|
4.3
|
41.4
|
1.0
|
|
CA
|
C:THR214
|
4.3
|
37.3
|
1.0
|
|
N
|
C:SER212
|
4.3
|
41.2
|
1.0
|
|
CA
|
C:LEU217
|
4.4
|
33.2
|
1.0
|
|
N
|
C:GLU218
|
4.4
|
35.3
|
1.0
|
|
N
|
C:LEU217
|
4.4
|
32.8
|
1.0
|
|
CA
|
C:SER212
|
4.4
|
38.1
|
1.0
|
|
C
|
C:SER212
|
4.4
|
39.7
|
1.0
|
|
CA
|
C:ALA216
|
4.5
|
34.2
|
1.0
|
|
C
|
C:ASP210
|
4.5
|
34.0
|
1.0
|
|
CG
|
C:GLU221
|
4.7
|
34.8
|
1.0
|
|
N
|
C:GLY215
|
4.7
|
33.6
|
1.0
|
|
C
|
C:THR214
|
4.7
|
35.2
|
1.0
|
|
C
|
C:LEU217
|
4.8
|
33.7
|
1.0
|
|
N
|
C:VAL211
|
4.8
|
34.8
|
1.0
|
|
C
|
C:LYS213
|
4.8
|
39.9
|
1.0
|
|
CG
|
C:GLU218
|
4.9
|
40.3
|
1.0
|
|
CA
|
C:LYS213
|
4.9
|
42.4
|
1.0
|
|
Calcium binding site 4 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 4 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca304
b:31.1
occ:1.00
|
OD2
|
C:ASP254
|
2.3
|
30.4
|
1.0
|
|
O
|
C:LYS260
|
2.3
|
27.9
|
1.0
|
|
OE1
|
C:GLN262
|
2.3
|
30.1
|
1.0
|
|
OD1
|
C:ASN256
|
2.4
|
37.0
|
1.0
|
|
OE1
|
C:GLU265
|
2.4
|
30.3
|
1.0
|
|
OD1
|
C:ASP258
|
2.5
|
29.7
|
1.0
|
|
OE2
|
C:GLU265
|
2.6
|
29.5
|
1.0
|
|
CD
|
C:GLU265
|
2.9
|
29.1
|
1.0
|
|
CG
|
C:ASP258
|
3.2
|
32.9
|
1.0
|
|
CG
|
C:ASN256
|
3.3
|
36.5
|
1.0
|
|
CG
|
C:ASP254
|
3.4
|
29.0
|
1.0
|
|
OD2
|
C:ASP258
|
3.5
|
32.8
|
1.0
|
|
C
|
C:LYS260
|
3.5
|
28.9
|
1.0
|
|
CD
|
C:GLN262
|
3.5
|
31.0
|
1.0
|
|
ND2
|
C:ASN256
|
3.8
|
37.3
|
1.0
|
|
NE2
|
C:GLN262
|
4.0
|
33.5
|
1.0
|
|
N
|
C:LYS260
|
4.1
|
36.5
|
1.0
|
|
N
|
C:GLN262
|
4.2
|
28.7
|
1.0
|
|
N
|
C:ASN256
|
4.2
|
31.5
|
1.0
|
|
N
|
C:ASP258
|
4.2
|
39.5
|
1.0
|
|
OD1
|
C:ASP254
|
4.2
|
30.0
|
1.0
|
|
CA
|
C:ASP254
|
4.2
|
29.1
|
1.0
|
|
CG
|
C:GLU265
|
4.3
|
28.4
|
1.0
|
|
CA
|
C:LYS260
|
4.3
|
33.1
|
1.0
|
|
CB
|
C:ASP254
|
4.4
|
28.4
|
1.0
|
|
N
|
C:ILE261
|
4.4
|
27.7
|
1.0
|
|
CB
|
C:ASP258
|
4.4
|
32.4
|
1.0
|
|
C
|
C:ASP254
|
4.4
|
29.3
|
1.0
|
|
N
|
C:LYS257
|
4.5
|
39.7
|
1.0
|
|
CA
|
C:ILE261
|
4.5
|
27.6
|
1.0
|
|
CB
|
C:ASN256
|
4.5
|
34.5
|
1.0
|
|
N
|
C:VAL255
|
4.5
|
30.8
|
1.0
|
|
CA
|
C:ASN256
|
4.6
|
32.7
|
1.0
|
|
C
|
C:ASN256
|
4.7
|
36.4
|
1.0
|
|
CB
|
C:LYS260
|
4.7
|
35.6
|
1.0
|
|
CA
|
C:ASP258
|
4.7
|
36.8
|
1.0
|
|
N
|
C:GLY259
|
4.7
|
35.0
|
1.0
|
|
CG
|
C:GLN262
|
4.8
|
28.5
|
1.0
|
|
O
|
C:HOH442
|
4.8
|
24.8
|
1.0
|
|
C
|
C:ILE261
|
4.8
|
29.1
|
1.0
|
|
CB
|
C:GLN262
|
4.9
|
29.0
|
1.0
|
|
O
|
C:ASP254
|
4.9
|
26.8
|
1.0
|
|
C
|
C:ASP258
|
4.9
|
35.1
|
1.0
|
|
Calcium binding site 5 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 5 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca301
b:32.4
occ:1.00
|
OD1
|
D:ASP118
|
2.3
|
36.4
|
1.0
|
|
OD1
|
D:ASP120
|
2.3
|
37.4
|
1.0
|
|
O
|
D:HOH440
|
2.3
|
42.4
|
1.0
|
|
O
|
D:PHE124
|
2.3
|
28.3
|
1.0
|
|
OG
|
D:SER122
|
2.5
|
30.6
|
1.0
|
|
OE2
|
D:GLU129
|
2.5
|
33.1
|
1.0
|
|
OE1
|
D:GLU129
|
2.7
|
30.0
|
1.0
|
|
CD
|
D:GLU129
|
3.0
|
31.7
|
1.0
|
|
CG
|
D:ASP120
|
3.2
|
39.8
|
1.0
|
|
OD2
|
D:ASP120
|
3.4
|
37.6
|
1.0
|
|
CG
|
D:ASP118
|
3.5
|
35.3
|
1.0
|
|
CB
|
D:SER122
|
3.5
|
32.4
|
1.0
|
|
C
|
D:PHE124
|
3.6
|
32.3
|
1.0
|
|
N
|
D:SER122
|
3.9
|
30.9
|
1.0
|
|
O
|
D:HOH452
|
4.0
|
19.9
|
1.0
|
|
CA
|
D:ASP118
|
4.2
|
34.9
|
1.0
|
|
CA
|
D:SER122
|
4.3
|
31.3
|
1.0
|
|
N
|
D:PHE124
|
4.3
|
34.0
|
1.0
|
|
CB
|
D:ASP118
|
4.3
|
33.8
|
1.0
|
|
OD2
|
D:ASP118
|
4.3
|
37.1
|
1.0
|
|
N
|
D:SER126
|
4.4
|
29.2
|
1.0
|
|
CG
|
D:GLU129
|
4.5
|
32.7
|
1.0
|
|
N
|
D:ILE125
|
4.5
|
34.7
|
1.0
|
|
CA
|
D:ILE125
|
4.5
|
32.1
|
1.0
|
|
CA
|
D:PHE124
|
4.5
|
32.4
|
1.0
|
|
C
|
D:ASP118
|
4.5
|
38.1
|
1.0
|
|
CB
|
D:ASP120
|
4.6
|
35.5
|
1.0
|
|
N
|
D:ASP120
|
4.6
|
37.5
|
1.0
|
|
N
|
D:GLY123
|
4.7
|
32.8
|
1.0
|
|
N
|
D:SER121
|
4.7
|
38.9
|
1.0
|
|
OG
|
D:SER126
|
4.8
|
39.1
|
1.0
|
|
C
|
D:SER122
|
4.8
|
31.0
|
1.0
|
|
N
|
D:ALA119
|
4.8
|
40.5
|
1.0
|
|
O
|
D:HOH431
|
4.9
|
38.8
|
1.0
|
|
C
|
D:ASP120
|
4.9
|
38.0
|
1.0
|
|
CA
|
D:ASP120
|
4.9
|
34.6
|
1.0
|
|
C
|
D:ILE125
|
4.9
|
30.0
|
1.0
|
|
Calcium binding site 6 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 6 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca302
b:43.2
occ:1.00
|
O
|
D:ARG168
|
2.3
|
30.6
|
1.0
|
|
OD1
|
D:ASP162
|
2.4
|
37.6
|
1.0
|
|
OD1
|
D:ASP166
|
2.4
|
53.9
|
1.0
|
|
O
|
D:HOH404
|
2.7
|
38.7
|
1.0
|
|
OD1
|
D:ASN164
|
2.8
|
76.4
|
1.0
|
|
CG
|
D:ASP166
|
3.4
|
51.1
|
1.0
|
|
O
|
D:ASN164
|
3.5
|
80.5
|
1.0
|
|
CG
|
D:ASN164
|
3.5
|
65.0
|
1.0
|
|
C
|
D:ARG168
|
3.5
|
34.5
|
1.0
|
|
CG
|
D:ASP162
|
3.6
|
39.0
|
1.0
|
|
ND2
|
D:ASN164
|
3.6
|
64.4
|
1.0
|
|
OD2
|
D:ASP166
|
3.9
|
54.6
|
1.0
|
|
OD2
|
D:ASP173
|
4.1
|
31.6
|
1.0
|
|
N
|
D:ARG168
|
4.2
|
33.3
|
1.0
|
|
OD2
|
D:ASP162
|
4.2
|
40.9
|
1.0
|
|
CA
|
D:ARG168
|
4.4
|
35.7
|
1.0
|
|
N
|
D:LEU169
|
4.4
|
31.9
|
1.0
|
|
N
|
D:ASP166
|
4.4
|
44.7
|
1.0
|
|
CA
|
D:ASP162
|
4.5
|
43.7
|
1.0
|
|
CA
|
D:LEU169
|
4.5
|
33.1
|
1.0
|
|
CB
|
D:ASP166
|
4.5
|
42.2
|
1.0
|
|
N
|
D:ARG163
|
4.6
|
57.4
|
1.0
|
|
CG
|
D:ARG168
|
4.6
|
43.1
|
1.0
|
|
N
|
D:ASN164
|
4.6
|
73.3
|
1.0
|
|
C
|
D:ASN164
|
4.6
|
71.9
|
1.0
|
|
CB
|
D:ASP162
|
4.6
|
44.4
|
1.0
|
|
C
|
D:ASP162
|
4.7
|
47.2
|
1.0
|
|
N
|
D:ASP170
|
4.7
|
34.1
|
1.0
|
|
CB
|
D:ASN164
|
4.8
|
65.5
|
1.0
|
|
CA
|
D:ASP166
|
4.9
|
41.0
|
1.0
|
|
N
|
D:GLY167
|
4.9
|
35.1
|
1.0
|
|
C
|
D:LEU169
|
4.9
|
32.2
|
1.0
|
|
Calcium binding site 7 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 7 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca303
b:52.5
occ:1.00
|
OE1
|
D:GLU221
|
2.3
|
32.9
|
1.0
|
|
O
|
D:ALA216
|
2.3
|
28.1
|
1.0
|
|
OD1
|
D:ASP210
|
2.4
|
34.3
|
1.0
|
|
OG1
|
D:THR214
|
2.6
|
32.2
|
1.0
|
|
OG
|
D:SER212
|
2.6
|
39.8
|
1.0
|
|
CD
|
D:GLU221
|
3.1
|
33.0
|
1.0
|
|
OE2
|
D:GLU221
|
3.2
|
37.1
|
1.0
|
|
OE1
|
D:GLU218
|
3.3
|
43.4
|
1.0
|
|
CG
|
D:ASP210
|
3.5
|
33.9
|
1.0
|
|
C
|
D:ALA216
|
3.5
|
29.7
|
1.0
|
|
CB
|
D:THR214
|
3.7
|
34.5
|
1.0
|
|
CG2
|
D:THR214
|
3.9
|
36.1
|
1.0
|
|
N
|
D:THR214
|
3.9
|
36.4
|
1.0
|
|
CB
|
D:SER212
|
4.0
|
37.5
|
1.0
|
|
CD
|
D:GLU218
|
4.0
|
47.0
|
1.0
|
|
OD2
|
D:ASP210
|
4.2
|
36.0
|
1.0
|
|
CA
|
D:ASP210
|
4.3
|
32.4
|
1.0
|
|
N
|
D:GLU218
|
4.3
|
34.5
|
1.0
|
|
CA
|
D:LEU217
|
4.3
|
31.9
|
1.0
|
|
N
|
D:SER212
|
4.3
|
37.9
|
1.0
|
|
CA
|
D:THR214
|
4.3
|
34.7
|
1.0
|
|
N
|
D:LEU217
|
4.3
|
31.9
|
1.0
|
|
N
|
D:ALA216
|
4.4
|
32.6
|
1.0
|
|
N
|
D:LYS213
|
4.4
|
39.2
|
1.0
|
|
CB
|
D:ASP210
|
4.4
|
33.3
|
1.0
|
|
CA
|
D:SER212
|
4.5
|
38.8
|
1.0
|
|
CG
|
D:GLU218
|
4.5
|
44.1
|
1.0
|
|
C
|
D:SER212
|
4.5
|
38.0
|
1.0
|
|
CG
|
D:GLU221
|
4.5
|
30.4
|
1.0
|
|
CA
|
D:ALA216
|
4.6
|
30.0
|
1.0
|
|
C
|
D:ASP210
|
4.6
|
35.0
|
1.0
|
|
C
|
D:LEU217
|
4.7
|
33.3
|
1.0
|
|
CB
|
D:GLU218
|
4.8
|
39.0
|
1.0
|
|
OE2
|
D:GLU218
|
4.8
|
59.5
|
1.0
|
|
N
|
D:GLY215
|
4.8
|
31.0
|
1.0
|
|
C
|
D:THR214
|
4.9
|
33.5
|
1.0
|
|
N
|
D:VAL211
|
4.9
|
35.9
|
1.0
|
|
Calcium binding site 8 out
of 8 in 8bav
Go back to
Calcium Binding Sites List in 8bav
Calcium binding site 8 out
of 8 in the Secretagogin (Human) in Complex with Its Target Peptide From Snap-25
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Secretagogin (Human) in Complex with Its Target Peptide From Snap-25 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca304
b:30.3
occ:1.00
|
OE1
|
D:GLN262
|
2.2
|
29.7
|
1.0
|
|
OD2
|
D:ASP254
|
2.2
|
24.0
|
1.0
|
|
OD1
|
D:ASN256
|
2.3
|
29.1
|
1.0
|
|
O
|
D:LYS260
|
2.4
|
27.5
|
1.0
|
|
OD1
|
D:ASP258
|
2.5
|
30.6
|
1.0
|
|
OE2
|
D:GLU265
|
2.5
|
31.9
|
1.0
|
|
OE1
|
D:GLU265
|
2.6
|
32.2
|
1.0
|
|
CD
|
D:GLU265
|
2.9
|
33.5
|
1.0
|
|
CG
|
D:ASP258
|
3.3
|
33.4
|
1.0
|
|
CD
|
D:GLN262
|
3.3
|
31.1
|
1.0
|
|
CG
|
D:ASN256
|
3.4
|
30.5
|
1.0
|
|
CG
|
D:ASP254
|
3.4
|
27.5
|
1.0
|
|
C
|
D:LYS260
|
3.5
|
29.1
|
1.0
|
|
OD2
|
D:ASP258
|
3.6
|
29.2
|
1.0
|
|
NE2
|
D:GLN262
|
3.9
|
33.3
|
1.0
|
|
ND2
|
D:ASN256
|
3.9
|
31.6
|
1.0
|
|
N
|
D:GLN262
|
4.1
|
29.6
|
1.0
|
|
OD1
|
D:ASP254
|
4.1
|
30.5
|
1.0
|
|
N
|
D:LYS260
|
4.2
|
29.8
|
1.0
|
|
N
|
D:ASP258
|
4.3
|
36.4
|
1.0
|
|
CA
|
D:LYS260
|
4.3
|
30.3
|
1.0
|
|
N
|
D:ILE261
|
4.3
|
27.7
|
1.0
|
|
CA
|
D:ASP254
|
4.4
|
29.3
|
1.0
|
|
CA
|
D:ILE261
|
4.4
|
27.6
|
1.0
|
|
N
|
D:ASN256
|
4.4
|
34.7
|
1.0
|
|
CG
|
D:GLU265
|
4.4
|
33.1
|
1.0
|
|
CB
|
D:ASP254
|
4.4
|
28.5
|
1.0
|
|
N
|
D:LYS257
|
4.5
|
38.7
|
1.0
|
|
CB
|
D:ASP258
|
4.5
|
32.1
|
1.0
|
|
C
|
D:ASP254
|
4.6
|
30.1
|
1.0
|
|
CB
|
D:ASN256
|
4.6
|
30.6
|
1.0
|
|
CB
|
D:LYS260
|
4.6
|
31.9
|
1.0
|
|
CG
|
D:GLN262
|
4.6
|
30.2
|
1.0
|
|
N
|
D:VAL255
|
4.6
|
31.6
|
1.0
|
|
C
|
D:ILE261
|
4.7
|
28.7
|
1.0
|
|
CA
|
D:ASN256
|
4.8
|
33.7
|
1.0
|
|
O
|
D:HOH461
|
4.8
|
29.2
|
1.0
|
|
CB
|
D:GLN262
|
4.8
|
31.4
|
1.0
|
|
CA
|
D:ASP258
|
4.8
|
34.4
|
1.0
|
|
C
|
D:ASN256
|
4.8
|
35.7
|
1.0
|
|
N
|
D:GLY259
|
4.9
|
35.4
|
1.0
|
|
Reference:
R.Schnell,
E.Szodorai.
Calmodulin Type Regulator (Homo Sapiens) with Peptide Ligand To Be Published.
Page generated: Thu Jul 10 03:25:23 2025
|
