Calcium in PDB 8bbj: Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
Protein crystallography data
The structure of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4, PDB code: 8bbj
was solved by
R.Schnell,
E.Szodorai,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.29 /
2.65
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.409,
103.134,
121.656,
90,
90,
90
|
|
R / Rfree (%)
|
21.3 /
26.9
|
Other elements in 8bbj:
The structure of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
(pdb code 8bbj). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4, PDB code: 8bbj:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 1 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:64.5
occ:1.00
|
OD1
|
C:ASP118
|
2.3
|
58.3
|
1.0
|
|
OD1
|
C:ASP120
|
2.5
|
72.3
|
1.0
|
|
O
|
C:PHE124
|
2.5
|
59.9
|
1.0
|
|
OE1
|
C:GLU129
|
2.6
|
65.5
|
1.0
|
|
OG
|
C:SER122
|
2.7
|
57.7
|
1.0
|
|
OE2
|
C:GLU129
|
3.0
|
60.6
|
1.0
|
|
CD
|
C:GLU129
|
3.2
|
65.2
|
1.0
|
|
CG
|
C:ASP120
|
3.4
|
71.0
|
1.0
|
|
OD2
|
C:ASP120
|
3.5
|
74.7
|
1.0
|
|
CG
|
C:ASP118
|
3.5
|
58.3
|
1.0
|
|
CB
|
C:SER122
|
3.6
|
56.6
|
1.0
|
|
C
|
C:PHE124
|
3.7
|
61.0
|
1.0
|
|
N
|
C:SER122
|
4.1
|
63.5
|
1.0
|
|
OD2
|
C:ASP118
|
4.3
|
60.2
|
1.0
|
|
CA
|
C:ASP118
|
4.3
|
64.1
|
1.0
|
|
N
|
C:SER126
|
4.3
|
58.4
|
1.0
|
|
CA
|
C:SER122
|
4.4
|
61.4
|
1.0
|
|
N
|
C:PHE124
|
4.4
|
60.8
|
1.0
|
|
CA
|
C:ILE125
|
4.4
|
59.6
|
1.0
|
|
N
|
C:ILE125
|
4.5
|
58.6
|
1.0
|
|
CB
|
C:ASP118
|
4.5
|
55.5
|
1.0
|
|
OG
|
C:SER126
|
4.5
|
64.1
|
1.0
|
|
N
|
C:ASP120
|
4.6
|
65.3
|
1.0
|
|
CA
|
C:PHE124
|
4.6
|
62.6
|
1.0
|
|
CG
|
C:GLU129
|
4.7
|
55.8
|
1.0
|
|
C
|
C:ASP118
|
4.7
|
62.6
|
1.0
|
|
N
|
C:ALA119
|
4.7
|
57.7
|
1.0
|
|
CB
|
C:ASP120
|
4.7
|
61.0
|
1.0
|
|
C
|
C:ILE125
|
4.8
|
55.4
|
1.0
|
|
N
|
C:GLY123
|
4.9
|
60.1
|
1.0
|
|
C
|
C:SER122
|
4.9
|
57.9
|
1.0
|
|
CB
|
C:SER126
|
4.9
|
62.0
|
1.0
|
|
N
|
C:SER121
|
4.9
|
64.5
|
1.0
|
|
Calcium binding site 2 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 2 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca302
b:71.8
occ:1.00
|
OD1
|
C:ASN164
|
2.4
|
86.9
|
1.0
|
|
O
|
C:ARG168
|
2.4
|
67.0
|
1.0
|
|
OD2
|
C:ASP166
|
2.6
|
75.6
|
1.0
|
|
OD1
|
C:ASP162
|
2.6
|
67.0
|
1.0
|
|
CG
|
C:ASP166
|
3.3
|
75.8
|
1.0
|
|
CG
|
C:ASN164
|
3.4
|
77.1
|
1.0
|
|
OD1
|
C:ASP166
|
3.5
|
80.0
|
1.0
|
|
OD2
|
C:ASP173
|
3.5
|
63.8
|
1.0
|
|
C
|
C:ARG168
|
3.7
|
63.6
|
1.0
|
|
CG
|
C:ASP162
|
3.8
|
71.4
|
1.0
|
|
ND2
|
C:ASN164
|
3.8
|
77.3
|
1.0
|
|
N
|
C:ASN164
|
4.2
|
71.9
|
1.0
|
|
N
|
C:LYS163
|
4.3
|
71.0
|
1.0
|
|
OD2
|
C:ASP162
|
4.4
|
75.3
|
1.0
|
|
N
|
C:ARG168
|
4.5
|
73.3
|
1.0
|
|
N
|
C:LEU169
|
4.6
|
59.7
|
1.0
|
|
CA
|
C:ARG168
|
4.6
|
70.8
|
1.0
|
|
CA
|
C:LEU169
|
4.6
|
61.2
|
1.0
|
|
CA
|
C:ASP162
|
4.6
|
62.3
|
1.0
|
|
CB
|
C:ASN164
|
4.7
|
75.2
|
1.0
|
|
CB
|
C:ASP166
|
4.7
|
77.8
|
1.0
|
|
C
|
C:ASP162
|
4.7
|
67.3
|
1.0
|
|
CG
|
C:ASP173
|
4.7
|
66.2
|
1.0
|
|
N
|
C:ASP166
|
4.7
|
74.4
|
1.0
|
|
N
|
C:ASP170
|
4.8
|
57.5
|
1.0
|
|
CB
|
C:ASP162
|
4.8
|
61.4
|
1.0
|
|
CA
|
C:ASN164
|
4.8
|
73.2
|
1.0
|
|
CB
|
C:ARG168
|
4.9
|
69.4
|
1.0
|
|
N
|
C:LYS165
|
4.9
|
76.4
|
1.0
|
|
OD2
|
C:ASP170
|
5.0
|
76.7
|
1.0
|
|
Calcium binding site 3 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 3 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca303
b:96.3
occ:1.00
|
O
|
C:ALA216
|
2.2
|
75.0
|
1.0
|
|
OD1
|
C:ASP210
|
2.4
|
75.1
|
1.0
|
|
OG
|
C:SER212
|
2.4
|
85.8
|
1.0
|
|
OG1
|
C:THR214
|
2.6
|
81.3
|
1.0
|
|
OE1
|
C:GLU221
|
2.7
|
77.6
|
1.0
|
|
OE1
|
C:GLU218
|
2.9
|
93.3
|
1.0
|
|
OE2
|
C:GLU221
|
3.2
|
80.7
|
1.0
|
|
C
|
C:ALA216
|
3.3
|
68.5
|
1.0
|
|
CG
|
C:ASP210
|
3.3
|
74.2
|
1.0
|
|
CD
|
C:GLU221
|
3.3
|
83.7
|
1.0
|
|
CB
|
C:THR214
|
3.6
|
78.5
|
1.0
|
|
N
|
C:ALA216
|
3.7
|
70.9
|
1.0
|
|
CB
|
C:SER212
|
3.8
|
80.4
|
1.0
|
|
CD
|
C:GLU218
|
3.8
|
91.0
|
1.0
|
|
CG2
|
C:THR214
|
3.8
|
81.7
|
1.0
|
|
N
|
C:THR214
|
3.9
|
79.5
|
1.0
|
|
OD2
|
C:ASP210
|
3.9
|
73.8
|
1.0
|
|
CG
|
C:GLU218
|
4.0
|
89.1
|
1.0
|
|
CA
|
C:ALA216
|
4.1
|
71.5
|
1.0
|
|
CA
|
C:THR214
|
4.2
|
76.7
|
1.0
|
|
N
|
C:LEU217
|
4.2
|
64.1
|
1.0
|
|
CB
|
C:ASP210
|
4.3
|
73.9
|
1.0
|
|
N
|
C:GLY215
|
4.3
|
76.3
|
1.0
|
|
CA
|
C:LEU217
|
4.3
|
73.0
|
1.0
|
|
CA
|
C:ASP210
|
4.4
|
70.4
|
1.0
|
|
C
|
C:THR214
|
4.5
|
81.2
|
1.0
|
|
N
|
C:LYS213
|
4.5
|
80.6
|
1.0
|
|
N
|
C:SER212
|
4.5
|
76.7
|
1.0
|
|
CA
|
C:SER212
|
4.6
|
76.3
|
1.0
|
|
C
|
C:SER212
|
4.7
|
81.6
|
1.0
|
|
N
|
C:GLU218
|
4.7
|
68.9
|
1.0
|
|
CD2
|
C:LEU217
|
4.7
|
69.6
|
1.0
|
|
CG
|
C:GLU221
|
4.8
|
74.5
|
1.0
|
|
C
|
C:GLY215
|
4.9
|
69.5
|
1.0
|
|
C
|
C:LEU217
|
4.9
|
72.4
|
1.0
|
|
C
|
C:ASP210
|
4.9
|
74.8
|
1.0
|
|
CB
|
C:ALA216
|
4.9
|
66.1
|
1.0
|
|
OE2
|
C:GLU218
|
5.0
|
92.2
|
1.0
|
|
Calcium binding site 4 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 4 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca304
b:75.6
occ:1.00
|
OD1
|
C:ASN256
|
2.3
|
79.2
|
1.0
|
|
OE1
|
C:GLU265
|
2.4
|
76.9
|
1.0
|
|
O
|
C:LYS260
|
2.4
|
75.3
|
1.0
|
|
OD2
|
C:ASP254
|
2.4
|
75.3
|
1.0
|
|
OD1
|
C:ASP258
|
2.5
|
79.7
|
1.0
|
|
OE1
|
C:GLN262
|
2.5
|
74.3
|
1.0
|
|
OE2
|
C:GLU265
|
2.6
|
78.1
|
1.0
|
|
CD
|
C:GLU265
|
2.8
|
76.8
|
1.0
|
|
CG
|
C:ASP258
|
3.2
|
80.0
|
1.0
|
|
CG
|
C:ASN256
|
3.3
|
75.5
|
1.0
|
|
OD2
|
C:ASP258
|
3.4
|
85.7
|
1.0
|
|
CG
|
C:ASP254
|
3.4
|
78.0
|
1.0
|
|
CD
|
C:GLN262
|
3.5
|
75.4
|
1.0
|
|
C
|
C:LYS260
|
3.6
|
77.1
|
1.0
|
|
ND2
|
C:ASN256
|
3.7
|
86.5
|
1.0
|
|
NE2
|
C:GLN262
|
3.9
|
75.8
|
1.0
|
|
OD1
|
C:ASP254
|
4.0
|
84.7
|
1.0
|
|
N
|
C:GLN262
|
4.2
|
68.0
|
1.0
|
|
CA
|
C:ASP254
|
4.3
|
75.4
|
1.0
|
|
CG
|
C:GLU265
|
4.3
|
74.6
|
1.0
|
|
N
|
C:ASP258
|
4.3
|
80.3
|
1.0
|
|
CB
|
C:ASP254
|
4.4
|
72.2
|
1.0
|
|
N
|
C:ASN256
|
4.4
|
86.8
|
1.0
|
|
CA
|
C:ILE261
|
4.4
|
70.8
|
1.0
|
|
N
|
C:LYS260
|
4.4
|
74.9
|
1.0
|
|
N
|
C:ILE261
|
4.5
|
68.8
|
1.0
|
|
CB
|
C:ASP258
|
4.5
|
81.4
|
1.0
|
|
N
|
C:LYS257
|
4.5
|
81.1
|
1.0
|
|
CB
|
C:ASN256
|
4.5
|
74.2
|
1.0
|
|
N
|
C:VAL255
|
4.6
|
73.6
|
1.0
|
|
CA
|
C:LYS260
|
4.6
|
77.3
|
1.0
|
|
C
|
C:ASP254
|
4.7
|
75.7
|
1.0
|
|
CG
|
C:GLN262
|
4.8
|
71.1
|
1.0
|
|
CA
|
C:ASN256
|
4.8
|
79.9
|
1.0
|
|
C
|
C:ILE261
|
4.9
|
67.9
|
1.0
|
|
CA
|
C:ASP258
|
4.9
|
78.5
|
1.0
|
|
C
|
C:ASN256
|
4.9
|
83.7
|
1.0
|
|
N
|
C:GLY259
|
4.9
|
83.2
|
1.0
|
|
CB
|
C:GLN262
|
4.9
|
70.2
|
1.0
|
|
CB
|
C:GLU265
|
5.0
|
65.6
|
1.0
|
|
Calcium binding site 5 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 5 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca301
b:61.9
occ:1.00
|
OD2
|
D:ASP120
|
2.3
|
62.8
|
1.0
|
|
O
|
D:HOH405
|
2.3
|
56.6
|
1.0
|
|
OG
|
D:SER122
|
2.5
|
59.1
|
1.0
|
|
OE2
|
D:GLU129
|
2.5
|
60.6
|
1.0
|
|
OE1
|
D:GLU129
|
2.6
|
65.8
|
1.0
|
|
OD1
|
D:ASP118
|
2.6
|
57.5
|
1.0
|
|
O
|
D:PHE124
|
2.6
|
55.8
|
1.0
|
|
CD
|
D:GLU129
|
2.9
|
61.7
|
1.0
|
|
CG
|
D:ASP120
|
3.2
|
62.7
|
1.0
|
|
OD1
|
D:ASP120
|
3.5
|
62.6
|
1.0
|
|
CB
|
D:SER122
|
3.6
|
54.2
|
1.0
|
|
C
|
D:PHE124
|
3.7
|
56.7
|
1.0
|
|
CG
|
D:ASP118
|
3.8
|
56.4
|
1.0
|
|
O
|
D:HOH407
|
4.0
|
58.6
|
1.0
|
|
N
|
D:SER122
|
4.1
|
62.7
|
1.0
|
|
CA
|
D:ASP118
|
4.3
|
60.2
|
1.0
|
|
CG
|
D:GLU129
|
4.4
|
57.3
|
1.0
|
|
CA
|
D:SER122
|
4.4
|
58.5
|
1.0
|
|
N
|
D:SER126
|
4.4
|
60.1
|
1.0
|
|
N
|
D:PHE124
|
4.5
|
56.7
|
1.0
|
|
CA
|
D:ILE125
|
4.5
|
60.6
|
1.0
|
|
N
|
D:ILE125
|
4.5
|
57.6
|
1.0
|
|
N
|
D:ASP120
|
4.5
|
66.6
|
1.0
|
|
CB
|
D:ASP118
|
4.5
|
58.8
|
1.0
|
|
OG
|
D:SER126
|
4.6
|
64.9
|
1.0
|
|
C
|
D:ASP118
|
4.6
|
58.2
|
1.0
|
|
CB
|
D:ASP120
|
4.6
|
63.2
|
1.0
|
|
N
|
D:ALA119
|
4.6
|
61.7
|
1.0
|
|
CA
|
D:PHE124
|
4.7
|
59.3
|
1.0
|
|
OD2
|
D:ASP118
|
4.7
|
54.1
|
1.0
|
|
N
|
D:SER121
|
4.9
|
60.8
|
1.0
|
|
C
|
D:ILE125
|
4.9
|
60.4
|
1.0
|
|
N
|
D:GLY123
|
5.0
|
54.8
|
1.0
|
|
CA
|
D:ASP120
|
5.0
|
57.0
|
1.0
|
|
Calcium binding site 6 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 6 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca302
b:73.0
occ:1.00
|
OD1
|
D:ASP162
|
2.3
|
70.7
|
1.0
|
|
OD1
|
D:ASN164
|
2.4
|
80.1
|
1.0
|
|
OD2
|
D:ASP166
|
2.4
|
67.0
|
1.0
|
|
O
|
D:ARG168
|
2.5
|
66.6
|
1.0
|
|
CG
|
D:ASN164
|
3.5
|
75.2
|
1.0
|
|
CG
|
D:ASP166
|
3.5
|
72.9
|
1.0
|
|
CG
|
D:ASP162
|
3.5
|
71.3
|
1.0
|
|
C
|
D:ARG168
|
3.6
|
59.1
|
1.0
|
|
OD2
|
D:ASP173
|
3.8
|
58.5
|
1.0
|
|
ND2
|
D:ASN164
|
4.1
|
70.2
|
1.0
|
|
OD1
|
D:ASP166
|
4.1
|
76.1
|
1.0
|
|
OD2
|
D:ASP162
|
4.2
|
71.5
|
1.0
|
|
N
|
D:ARG168
|
4.2
|
73.3
|
1.0
|
|
N
|
D:ASN164
|
4.3
|
71.7
|
1.0
|
|
N
|
D:ASP166
|
4.3
|
75.8
|
1.0
|
|
N
|
D:LYS163
|
4.4
|
69.2
|
1.0
|
|
CA
|
D:ARG168
|
4.4
|
65.4
|
1.0
|
|
CA
|
D:ASP162
|
4.4
|
67.3
|
1.0
|
|
CB
|
D:ASP162
|
4.5
|
66.4
|
1.0
|
|
N
|
D:LEU169
|
4.6
|
54.1
|
1.0
|
|
CB
|
D:ASP166
|
4.6
|
73.1
|
1.0
|
|
C
|
D:ASP162
|
4.6
|
66.8
|
1.0
|
|
N
|
D:LYS165
|
4.6
|
78.1
|
1.0
|
|
CB
|
D:ASN164
|
4.7
|
75.6
|
1.0
|
|
CA
|
D:LEU169
|
4.7
|
56.5
|
1.0
|
|
CB
|
D:ARG168
|
4.7
|
65.3
|
1.0
|
|
C
|
D:ASN164
|
4.8
|
79.7
|
1.0
|
|
CA
|
D:ASN164
|
4.8
|
67.4
|
1.0
|
|
N
|
D:ASP170
|
4.8
|
57.5
|
1.0
|
|
CA
|
D:ASP166
|
4.9
|
74.9
|
1.0
|
|
C
|
D:LEU169
|
5.0
|
56.7
|
1.0
|
|
N
|
D:GLY167
|
5.0
|
68.1
|
1.0
|
|
Calcium binding site 7 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 7 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca303
b:84.1
occ:1.00
|
OD1
|
D:ASP210
|
2.3
|
69.7
|
1.0
|
|
O
|
D:ALA216
|
2.4
|
66.5
|
1.0
|
|
OE2
|
D:GLU218
|
2.5
|
102.5
|
1.0
|
|
OG1
|
D:THR214
|
2.7
|
70.8
|
1.0
|
|
OE1
|
D:GLU221
|
3.0
|
71.9
|
1.0
|
|
CG
|
D:ASP210
|
3.0
|
66.0
|
1.0
|
|
OG
|
D:SER212
|
3.1
|
71.7
|
1.0
|
|
CD
|
D:GLU218
|
3.3
|
88.8
|
1.0
|
|
OE1
|
D:GLU218
|
3.4
|
102.2
|
1.0
|
|
N
|
D:THR214
|
3.5
|
74.0
|
1.0
|
|
OD2
|
D:ASP210
|
3.5
|
64.0
|
1.0
|
|
OE2
|
D:GLU221
|
3.6
|
75.5
|
1.0
|
|
C
|
D:ALA216
|
3.6
|
62.3
|
1.0
|
|
CB
|
D:THR214
|
3.6
|
75.1
|
1.0
|
|
CG2
|
D:THR214
|
3.6
|
71.9
|
1.0
|
|
CD
|
D:GLU221
|
3.7
|
71.2
|
1.0
|
|
N
|
D:ALA216
|
4.0
|
63.1
|
1.0
|
|
CA
|
D:THR214
|
4.0
|
71.8
|
1.0
|
|
CB
|
D:ASP210
|
4.0
|
65.0
|
1.0
|
|
N
|
D:LYS213
|
4.1
|
71.8
|
1.0
|
|
N
|
D:GLY215
|
4.1
|
71.8
|
1.0
|
|
CA
|
D:ASP210
|
4.2
|
60.6
|
1.0
|
|
CB
|
D:SER212
|
4.3
|
74.1
|
1.0
|
|
N
|
D:SER212
|
4.4
|
67.5
|
1.0
|
|
C
|
D:THR214
|
4.4
|
66.2
|
1.0
|
|
CA
|
D:ALA216
|
4.4
|
62.6
|
1.0
|
|
C
|
D:SER212
|
4.4
|
71.6
|
1.0
|
|
N
|
D:LEU217
|
4.6
|
68.0
|
1.0
|
|
CA
|
D:SER212
|
4.6
|
73.7
|
1.0
|
|
C
|
D:LYS213
|
4.6
|
76.3
|
1.0
|
|
CA
|
D:LEU217
|
4.7
|
61.9
|
1.0
|
|
C
|
D:ASP210
|
4.7
|
61.6
|
1.0
|
|
CA
|
D:LYS213
|
4.7
|
71.9
|
1.0
|
|
CG
|
D:GLU218
|
4.7
|
82.8
|
1.0
|
|
N
|
D:VAL211
|
4.9
|
60.4
|
1.0
|
|
N
|
D:GLU218
|
4.9
|
69.9
|
1.0
|
|
C
|
D:GLY215
|
4.9
|
57.4
|
1.0
|
|
Calcium binding site 8 out
of 8 in 8bbj
Go back to
Calcium Binding Sites List in 8bbj
Calcium binding site 8 out
of 8 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca304
b:51.7
occ:1.00
|
O
|
D:LYS260
|
2.3
|
63.5
|
1.0
|
|
OD2
|
D:ASP254
|
2.3
|
59.7
|
1.0
|
|
OE1
|
D:GLN262
|
2.4
|
57.5
|
1.0
|
|
OE2
|
D:GLU265
|
2.4
|
71.1
|
1.0
|
|
OD1
|
D:ASN256
|
2.5
|
67.6
|
1.0
|
|
OD2
|
D:ASP258
|
2.5
|
70.4
|
1.0
|
|
OE1
|
D:GLU265
|
2.8
|
67.2
|
1.0
|
|
CD
|
D:GLU265
|
2.9
|
67.0
|
1.0
|
|
CG
|
D:ASP258
|
3.4
|
64.0
|
1.0
|
|
CG
|
D:ASP254
|
3.4
|
60.9
|
1.0
|
|
CG
|
D:ASN256
|
3.4
|
65.7
|
1.0
|
|
C
|
D:LYS260
|
3.5
|
61.0
|
1.0
|
|
CD
|
D:GLN262
|
3.5
|
55.9
|
1.0
|
|
OD1
|
D:ASP258
|
3.7
|
64.3
|
1.0
|
|
ND2
|
D:ASN256
|
3.9
|
67.3
|
1.0
|
|
NE2
|
D:GLN262
|
4.0
|
57.2
|
1.0
|
|
N
|
D:GLN262
|
4.1
|
57.8
|
1.0
|
|
CA
|
D:ASP254
|
4.2
|
62.9
|
1.0
|
|
OD1
|
D:ASP254
|
4.2
|
61.1
|
1.0
|
|
CG
|
D:GLU265
|
4.3
|
60.5
|
1.0
|
|
CB
|
D:ASP254
|
4.3
|
60.6
|
1.0
|
|
N
|
D:LYS260
|
4.3
|
67.7
|
1.0
|
|
N
|
D:ILE261
|
4.3
|
59.8
|
1.0
|
|
CA
|
D:ILE261
|
4.3
|
60.5
|
1.0
|
|
CA
|
D:LYS260
|
4.4
|
60.7
|
1.0
|
|
N
|
D:VAL255
|
4.4
|
63.0
|
1.0
|
|
N
|
D:ASP258
|
4.4
|
68.6
|
1.0
|
|
N
|
D:ASN256
|
4.5
|
66.2
|
1.0
|
|
C
|
D:ASP254
|
4.6
|
67.9
|
1.0
|
|
CB
|
D:ASP258
|
4.6
|
63.7
|
1.0
|
|
N
|
D:LYS257
|
4.6
|
67.0
|
1.0
|
|
CB
|
D:ASN256
|
4.7
|
54.8
|
1.0
|
|
CG
|
D:GLN262
|
4.7
|
47.9
|
1.0
|
|
C
|
D:ILE261
|
4.8
|
62.4
|
1.0
|
|
CB
|
D:GLN262
|
4.8
|
58.5
|
1.0
|
|
CB
|
D:LYS260
|
4.8
|
59.9
|
1.0
|
|
N
|
D:GLY259
|
4.9
|
61.3
|
1.0
|
|
CA
|
D:ASN256
|
4.9
|
54.8
|
1.0
|
|
CA
|
D:ASP258
|
5.0
|
62.1
|
1.0
|
|
C
|
D:ASN256
|
5.0
|
64.6
|
1.0
|
|
Reference:
R.Schnell,
E.Szodorai.
Calcium Binding Protein in Complex with Its 2ND Peptide Ligand To Be Published.
Page generated: Thu Jul 10 03:26:02 2025
|
