Atomistry » Calcium » PDB 8fg4-8fvp » 8fmm
Atomistry »
  Calcium »
    PDB 8fg4-8fvp »
      8fmm »

Calcium in PDB 8fmm: Complex Structure of Wild Type Troponin Complex

Protein crystallography data

The structure of Complex Structure of Wild Type Troponin Complex, PDB code: 8fmm was solved by P.Wang, M.Ahmed, H.Sadek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.24 / 3.11
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.071, 168.219, 69.683, 90, 101.4, 90
R / Rfree (%) 23 / 26.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Complex Structure of Wild Type Troponin Complex (pdb code 8fmm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Complex Structure of Wild Type Troponin Complex, PDB code: 8fmm:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 8fmm

Go back to Calcium Binding Sites List in 8fmm
Calcium binding site 1 out of 6 in the Complex Structure of Wild Type Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex Structure of Wild Type Troponin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:29.9
occ:1.00
OD1 A:ASP67 2.4 47.3 1.0
O A:THR71 2.4 25.3 1.0
OD1 A:ASP65 2.5 39.5 1.0
OG A:SER69 2.6 29.9 1.0
OE2 A:GLU76 2.7 38.7 1.0
OE1 A:GLU76 2.8 38.5 1.0
CD A:GLU76 3.1 36.0 1.0
CG A:ASP67 3.2 47.2 1.0
C A:THR71 3.4 25.2 1.0
OD2 A:ASP67 3.5 31.6 1.0
CG A:ASP65 3.7 43.6 1.0
CB A:SER69 4.0 35.5 1.0
OG1 A:THR71 4.0 27.6 1.0
CA A:VAL72 4.1 22.8 1.0
N A:VAL72 4.1 35.9 1.0
N A:ASP73 4.3 24.4 1.0
N A:THR71 4.3 33.0 1.0
CA A:THR71 4.4 22.7 1.0
OD2 A:ASP65 4.5 45.9 1.0
CB A:ASP67 4.5 38.7 1.0
OD1 A:ASP73 4.5 35.5 1.0
N A:SER69 4.5 44.0 1.0
CG A:ASP73 4.5 40.2 1.0
CG A:GLU76 4.6 28.5 1.0
OD2 A:ASP73 4.6 28.1 1.0
C A:VAL72 4.6 20.4 1.0
CB A:ASP65 4.6 32.8 1.0
CA A:ASP65 4.6 42.9 1.0
N A:ASP67 4.7 44.6 1.0
CA A:SER69 4.8 27.7 1.0
CB A:THR71 4.9 15.2 1.0

Calcium binding site 2 out of 6 in 8fmm

Go back to Calcium Binding Sites List in 8fmm
Calcium binding site 2 out of 6 in the Complex Structure of Wild Type Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Complex Structure of Wild Type Troponin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:22.2
occ:1.00
OD1 A:ASN107 2.4 41.0 1.0
OE1 A:GLU116 2.5 45.2 1.0
O A:TYR111 2.5 29.8 1.0
OD1 A:ASP109 2.6 33.9 1.0
OE2 A:GLU116 2.7 32.3 1.0
OD1 A:ASP105 2.8 35.6 1.0
CD A:GLU116 2.8 36.0 1.0
CG A:ASP109 3.3 35.7 1.0
CG A:ASN107 3.3 29.8 1.0
OD2 A:ASP109 3.4 37.4 1.0
C A:TYR111 3.5 30.5 1.0
OD2 A:ASP113 3.6 64.2 1.0
CG A:ASP105 3.8 35.2 1.0
ND2 A:ASN107 3.9 17.2 1.0
N A:ASP113 4.1 44.9 1.0
CG A:GLU116 4.2 37.3 1.0
CG A:ASP113 4.2 63.6 1.0
N A:ILE112 4.3 34.2 1.0
CA A:ILE112 4.3 23.6 1.0
CB A:ASN107 4.4 24.8 1.0
N A:TYR111 4.5 20.7 1.0
CA A:TYR111 4.5 22.9 1.0
OD2 A:ASP105 4.5 30.9 1.0
CB A:ASP109 4.6 33.1 1.0
CA A:ASP105 4.6 31.1 1.0
N A:ASP109 4.7 23.1 1.0
CB A:ASP105 4.7 25.6 1.0
C A:ILE112 4.7 35.3 1.0
CB A:ASP113 4.8 46.1 1.0
N A:ASN107 4.8 39.0 1.0
CB A:TYR111 4.8 16.1 1.0
OD1 A:ASP113 4.9 58.5 1.0
CB A:GLU116 4.9 22.1 1.0
N A:ALA108 5.0 23.1 1.0

Calcium binding site 3 out of 6 in 8fmm

Go back to Calcium Binding Sites List in 8fmm
Calcium binding site 3 out of 6 in the Complex Structure of Wild Type Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Complex Structure of Wild Type Troponin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca203

b:48.0
occ:1.00
OE2 A:GLU152 2.3 59.1 1.0
OD1 A:ASP145 2.4 61.5 1.0
O A:ARG147 2.4 34.7 1.0
OE1 A:GLU152 2.6 58.8 1.0
OD1 A:ASP141 2.7 47.7 1.0
OD1 A:ASN143 2.7 51.3 1.0
CD A:GLU152 2.8 57.3 1.0
ND2 A:ASN143 3.1 52.1 1.0
CG A:ASN143 3.2 52.2 1.0
CG A:ASP145 3.4 57.2 1.0
C A:ARG147 3.6 51.2 1.0
OD2 A:ASP145 3.7 62.8 1.0
CG A:ASP141 3.8 53.4 1.0
N A:ASP149 4.2 33.7 1.0
CG A:ARG147 4.3 33.2 1.0
CG A:GLU152 4.3 45.9 1.0
CB A:ASP141 4.3 50.6 1.0
CA A:ILE148 4.3 35.9 1.0
OD2 A:ASP149 4.4 50.5 1.0
N A:ILE148 4.4 46.3 1.0
CG A:ASP149 4.6 39.0 1.0
N A:ASP145 4.6 67.4 1.0
N A:ARG147 4.6 62.7 1.0
CA A:ARG147 4.6 56.2 1.0
CB A:ASP145 4.6 46.9 1.0
CA A:ASP141 4.7 50.5 1.0
CB A:ASN143 4.7 61.7 1.0
C A:ILE148 4.7 35.9 1.0
N A:ASN143 4.8 78.0 1.0
OD2 A:ASP141 4.8 57.0 1.0
CB A:ASP149 4.9 28.3 1.0
N A:LYS142 4.9 62.4 1.0
CB A:GLU152 5.0 36.9 1.0

Calcium binding site 4 out of 6 in 8fmm

Go back to Calcium Binding Sites List in 8fmm
Calcium binding site 4 out of 6 in the Complex Structure of Wild Type Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Complex Structure of Wild Type Troponin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca201

b:70.3
occ:1.00
O D:THR71 2.4 62.8 1.0
OD1 D:ASP67 2.5 85.2 1.0
OD2 D:ASP67 2.5 86.3 1.0
OG D:SER69 2.7 78.1 1.0
OE1 D:GLU76 2.7 63.8 1.0
CG D:ASP67 2.8 90.8 1.0
OE2 D:GLU76 3.0 64.2 1.0
OD1 D:ASP73 3.1 57.1 1.0
CD D:GLU76 3.2 61.0 1.0
OD1 D:ASP65 3.6 85.9 1.0
C D:THR71 3.6 62.8 1.0
CB D:SER69 4.0 85.4 1.0
CG D:ASP73 4.1 47.2 1.0
CG D:ASP65 4.1 82.9 1.0
OG1 D:THR71 4.2 65.8 1.0
N D:SER69 4.3 84.6 1.0
N D:THR71 4.3 74.8 1.0
CB D:ASP67 4.3 82.4 1.0
OD2 D:ASP65 4.3 78.7 1.0
CA D:THR71 4.5 66.0 1.0
N D:ASP73 4.5 41.2 1.0
N D:VAL72 4.6 58.3 1.0
CA D:SER69 4.6 82.5 1.0
CA D:VAL72 4.7 49.1 1.0
CG D:GLU76 4.7 52.6 1.0
OD2 D:ASP73 4.8 45.5 1.0
N D:GLY68 4.8 68.8 1.0
CB D:THR71 4.8 69.7 1.0
C D:SER69 4.9 68.0 1.0
N D:GLY70 5.0 63.1 1.0
CB D:ASP73 5.0 38.1 1.0
C D:VAL72 5.0 49.7 1.0

Calcium binding site 5 out of 6 in 8fmm

Go back to Calcium Binding Sites List in 8fmm
Calcium binding site 5 out of 6 in the Complex Structure of Wild Type Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Complex Structure of Wild Type Troponin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca202

b:30.2
occ:1.00
OD1 D:ASP109 2.3 35.2 1.0
OE1 D:GLU116 2.3 48.4 1.0
OD1 D:ASN107 2.3 33.0 1.0
O D:TYR111 2.3 30.1 1.0
OE2 D:GLU116 2.7 47.0 1.0
CD D:GLU116 2.8 47.5 1.0
CG D:ASP109 2.9 40.1 1.0
OD1 D:ASP105 3.0 33.0 1.0
OD2 D:ASP109 3.2 31.3 1.0
CG D:ASN107 3.3 41.5 1.0
C D:TYR111 3.5 27.1 1.0
ND2 D:ASN107 3.7 36.5 1.0
CG D:ASP105 4.0 29.8 1.0
CB D:ASP109 4.1 44.9 1.0
N D:TYR111 4.3 36.2 1.0
CG D:GLU116 4.3 48.2 1.0
N D:ILE112 4.3 22.9 1.0
CA D:TYR111 4.4 26.0 1.0
N D:ASP109 4.4 26.9 1.0
CA D:ILE112 4.4 34.6 1.0
OD2 D:ASP113 4.5 59.1 1.0
OD2 D:ASP105 4.5 37.4 1.0
CG D:ASP113 4.6 61.6 1.0
N D:ASP113 4.6 54.0 1.0
CB D:ASN107 4.7 29.8 1.0
CA D:ASP109 4.7 26.0 1.0
CB D:TYR111 4.7 27.6 1.0
C D:ILE112 4.8 47.2 1.0
N D:ASN107 4.8 32.5 1.0
CA D:ASP105 4.9 35.3 1.0
CB D:ASP113 4.9 54.6 1.0
CB D:ASP105 4.9 33.3 1.0
OD1 D:ASP113 4.9 61.7 1.0
C D:ASP109 5.0 28.7 1.0
N D:ALA108 5.0 38.2 1.0

Calcium binding site 6 out of 6 in 8fmm

Go back to Calcium Binding Sites List in 8fmm
Calcium binding site 6 out of 6 in the Complex Structure of Wild Type Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Complex Structure of Wild Type Troponin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca203

b:34.1
occ:1.00
OD1 D:ASN143 2.4 50.5 1.0
OE2 D:GLU152 2.4 56.0 1.0
OD1 D:ASP145 2.4 57.5 1.0
OD2 D:ASP145 2.6 56.1 1.0
O D:ARG147 2.6 37.7 1.0
CG D:ASP145 2.8 47.8 1.0
CD D:GLU152 2.8 44.9 1.0
OE1 D:GLU152 3.1 46.3 1.0
CG D:ASN143 3.2 52.2 1.0
ND2 D:ASN143 3.4 49.9 1.0
OD1 D:ASP141 3.5 48.0 1.0
C D:ARG147 3.8 38.9 1.0
CG D:GLU152 3.9 36.1 1.0
CB D:ASP145 4.3 38.9 1.0
CA D:ILE148 4.4 31.4 1.0
CG D:ASP141 4.4 55.9 1.0
OD2 D:ASP149 4.4 32.6 1.0
N D:ASP149 4.4 35.3 1.0
N D:ILE148 4.5 32.8 1.0
CA D:ASP141 4.5 35.4 1.0
C D:ILE148 4.6 31.1 1.0
CB D:ASN143 4.7 50.8 1.0
CG D:ASP149 4.7 42.2 1.0
N D:ASP145 4.7 53.0 1.0
N D:ARG147 4.8 58.8 1.0
N D:ASN143 4.8 34.5 1.0
CB D:ASP141 4.8 50.5 1.0
CA D:ARG147 4.8 56.0 1.0
CB D:ASP149 4.9 30.9 1.0
CG D:ARG147 4.9 46.3 1.0
CB D:GLU152 5.0 35.6 1.0
CA D:ASP145 5.0 49.5 1.0

Reference:

P.Wang, M.Ahmed, H.Sadek. Structural and Phenotypic Correction of K210DEL Genetic Cardiomyopathy By An Fda Approved Drug To Be Published.
Page generated: Thu Jul 10 04:40:59 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy