Calcium in PDB 8fn3: Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc:
2.7.7.7;

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc, PDB code: 8fn3 was solved by H.Jung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.81 / 2.17
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	98.595, 98.595, 81.376, 90, 90, 120
R / Rfree (%)	20.7 / 25.3

The binding sites of Calcium atom in the Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc (pdb code 8fn3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc, PDB code: 8fn3:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:39.7 occ:1.00 OD1 A:ASP13 2.2 37.9 1.0 OD2 A:ASP115 2.2 34.6 1.0 O A:MET14 2.3 28.6 1.0 OAR A:Y43501 2.4 38.0 1.0 OAN A:Y43501 2.4 34.4 1.0 OAK A:Y43501 2.6 42.5 1.0 CA A:CA503 3.1 64.0 1.0 CG A:ASP13 3.3 40.4 1.0 CG A:ASP115 3.3 39.0 1.0 C A:MET14 3.5 31.2 1.0 PAM A:Y43501 3.5 38.7 1.0 PAI A:Y43501 3.6 47.3 1.0 PAQ A:Y43501 3.7 53.5 1.0 OD1 A:ASP115 3.7 39.4 1.0 OD2 A:ASP13 3.7 49.5 1.0 OAL A:Y43501 3.8 42.2 1.0 OAP A:Y43501 3.9 40.4 1.0 N A:MET14 4.0 29.1 1.0 CAG A:Y43501 4.2 37.2 1.0 OAS A:Y43501 4.2 34.5 1.0 CA A:MET14 4.3 30.6 1.0 C A:ASP13 4.3 33.3 1.0 OAH A:Y43501 4.4 41.8 1.0 CB A:ASP13 4.5 38.8 1.0 N A:CYS16 4.5 32.0 1.0 N A:ASP15 4.5 30.4 1.0 CB A:ASP115 4.6 33.5 1.0 N A:PHE17 4.7 27.4 1.0 CA A:ASP15 4.7 32.6 1.0 CA A:ASP13 4.8 29.9 1.0 O A:ASP115 4.8 34.0 1.0 O A:ASP13 4.8 33.7 1.0 C A:ASP15 4.8 34.7 1.0 OAO A:Y43501 4.8 38.5 1.0 CB A:MET14 4.8 34.1 1.0 CB A:PHE17 4.8 29.2 1.0 OAT A:Y43501 4.9 43.4 1.0 NZ A:LYS231 4.9 49.7 1.0 OAJ A:Y43501 5.0 34.1 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Dna Polymerase Eta Incorporating Ditp Across Dc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:64.0 occ:1.00 OAK A:Y43501 2.3 42.5 1.0 OE1 A:GLU116 2.4 40.2 1.0 OD1 A:ASP13 2.6 37.9 1.0 OD2 A:ASP13 2.7 49.5 1.0 OD1 A:ASP115 2.8 39.4 1.0 CG A:ASP13 2.9 40.4 1.0 CA A:CA502 3.1 39.7 1.0 O3' P:DG8 3.2 46.6 1.0 CD A:GLU116 3.3 41.1 1.0 OD2 A:ASP115 3.5 34.6 1.0 CG A:ASP115 3.5 39.0 1.0 PAI A:Y43501 3.7 47.3 1.0 C3' P:DG8 3.7 41.7 1.0 OE2 A:GLU116 4.0 43.1 1.0 CB A:GLU116 4.1 32.6 1.0 OAR A:Y43501 4.2 38.0 1.0 CG A:GLU116 4.2 35.4 1.0 CB A:ASP13 4.3 38.8 1.0 OAJ A:Y43501 4.3 34.1 1.0 OAH A:Y43501 4.4 41.8 1.0 C4' P:DG8 4.5 41.3 1.0 OG A:SER113 4.5 38.6 1.0 O A:ASP115 4.6 34.0 1.0 CAG A:Y43501 4.7 37.2 1.0 C5' P:DG8 4.7 42.9 1.0 C A:ASP115 4.7 36.8 1.0 CA A:ASP13 4.8 29.9 1.0 OAL A:Y43501 4.8 42.2 1.0 OAN A:Y43501 4.9 34.4 1.0 NZ A:LYS224 4.9 43.1 1.0 N A:GLU116 5.0 34.2 1.0 CB A:ASP115 5.0 33.5 1.0

H.Jung, H.Jung. N/A N/A.