Calcium in PDB 8gml: Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg

Enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg, PDB code: 8gml was solved by H.Jung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	49.41 / 2.57
*Space group*	P 6₁
*Cell size a, b, c (Å), α, β, γ (°)*	98.822, 98.822, 81.184, 90, 90, 120
*R / R_free (%)*	20.1 / 26

Other elements in 8gml:

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg also contains other interesting chemical elements:

Fluorine

(F)

1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg (pdb code 8gml). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg, PDB code: 8gml:

Calcium binding site 1 out of 1 in 8gml

Go back to

Calcium Binding Sites List in 8gml

Calcium binding site 1 out of 1 in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca502 b:88.9 occ:1.00	OD1	A:ASP13	2.1	60.3	1.0
	OD2	A:ASP13	2.2	59.5	1.0
	CG	A:ASP13	2.4	54.5	1.0
	O11	A:B7P501	2.4	77.4	1.0
	O20	A:B7P501	2.9	82.8	1.0
	O	A:HOH605	3.0	57.0	1.0
	OD1	A:ASP115	3.2	67.4	1.0
	O12	A:B7P501	3.5	93.0	1.0
	P09	A:B7P501	3.5	89.0	1.0
	O16	A:B7P501	3.6	76.9	1.0
	O14	A:B7P501	3.6	67.6	1.0
	OE1	A:GLU116	3.7	60.2	1.0
	P13	A:B7P501	3.7	94.0	1.0
	P17	A:B7P501	3.8	82.9	1.0
	CB	A:ASP13	3.9	48.2	1.0
	O	A:MET14	4.1	50.2	1.0
	CG	A:ASP115	4.3	61.0	1.0
	O18	A:B7P501	4.3	73.3	1.0
	O10	A:B7P501	4.4	78.0	1.0
	CA	A:ASP13	4.7	46.3	1.0
	O08	A:B7P501	4.7	78.4	1.0
	CD	A:GLU116	4.7	56.8	1.0
	C	A:ASP13	4.8	43.5	1.0
	N	A:MET14	4.9	42.8	1.0
	C	A:MET14	5.0	47.6	1.0
	O	A:ASP115	5.0	48.9	1.0

Reference:

H.Jung, H.Jung. N/A N/A.

Page generated: Thu Jul 10 04:54:49 2025

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