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Calcium in PDB 8gq9: Crystal Structure of Lasso Peptide Epimerase Mslh

Protein crystallography data

The structure of Crystal Structure of Lasso Peptide Epimerase Mslh, PDB code: 8gq9 was solved by Y.Nakashima, H.Morita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.65 / 2.30
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 128.017, 128.017, 170.593, 90, 90, 90
R / Rfree (%) 17.7 / 20.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Lasso Peptide Epimerase Mslh (pdb code 8gq9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Lasso Peptide Epimerase Mslh, PDB code: 8gq9:

Calcium binding site 1 out of 1 in 8gq9

Go back to Calcium Binding Sites List in 8gq9
Calcium binding site 1 out of 1 in the Crystal Structure of Lasso Peptide Epimerase Mslh


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Lasso Peptide Epimerase Mslh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca704

b:68.0
occ:1.00
OE2 A:GLU44 2.3 55.9 1.0
O A:HOH802 2.4 81.3 1.0
OD1 A:ASN87 2.4 35.0 1.0
NE2 A:HIS261 2.4 62.1 1.0
O A:HOH899 2.5 42.2 1.0
NE2 A:HIS259 2.6 33.5 1.0
CE1 A:HIS259 3.1 34.0 1.0
CG A:ASN87 3.2 31.4 1.0
CE1 A:HIS261 3.3 67.6 1.0
CD A:GLU44 3.4 56.3 1.0
ND2 A:ASN87 3.4 28.6 1.0
CD2 A:HIS261 3.5 64.7 1.0
O A:HOH953 3.8 68.2 1.0
CD2 A:HIS259 3.9 32.2 1.0
OE1 A:GLU44 4.0 62.7 1.0
O A:GLY293 4.2 30.4 1.0
CD2 A:HIS88 4.2 35.7 1.0
CE1 A:HIS295 4.2 70.1 1.0
ND1 A:HIS259 4.4 39.8 1.0
CG A:GLU44 4.4 50.9 1.0
NE2 A:HIS295 4.4 66.5 1.0
ND1 A:HIS261 4.5 69.6 1.0
CA A:GLY293 4.5 35.2 1.0
OD2 A:ASP11 4.5 55.1 1.0
CG A:HIS261 4.6 65.7 1.0
CB A:ASN87 4.7 26.1 1.0
NE2 A:HIS88 4.7 39.0 1.0
CG A:HIS259 4.8 29.2 1.0
C A:GLY293 4.8 31.4 1.0
N A:ASN87 4.9 26.2 1.0

Reference:

Y.Nakashima, H.Morita. X-Ray Crystallographic Analysis of Lasso Peptide Epimerase; Mslh To Be Published.
Page generated: Thu Jul 10 04:56:44 2025

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