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Calcium in PDB 8ith: Crystal Structure of Lasso Peptide Epimerase Mslh H295N

Protein crystallography data

The structure of Crystal Structure of Lasso Peptide Epimerase Mslh H295N, PDB code: 8ith was solved by Y.Nakashima, M.Hiroyuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.22 / 2.55
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 127.888, 127.888, 171.292, 90, 90, 90
R / Rfree (%) 18.3 / 21.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Lasso Peptide Epimerase Mslh H295N (pdb code 8ith). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Lasso Peptide Epimerase Mslh H295N, PDB code: 8ith:

Calcium binding site 1 out of 1 in 8ith

Go back to Calcium Binding Sites List in 8ith
Calcium binding site 1 out of 1 in the Crystal Structure of Lasso Peptide Epimerase Mslh H295N


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Lasso Peptide Epimerase Mslh H295N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca604

b:49.1
occ:1.00
OE2 A:GLU44 2.2 55.3 1.0
NE2 A:HIS261 2.3 45.4 1.0
OD1 A:ASN87 2.3 50.0 1.0
NE2 A:HIS259 2.4 41.2 1.0
O A:HOH775 2.4 46.6 1.0
O A:HOH701 2.5 60.5 1.0
CE1 A:HIS259 3.1 41.1 1.0
CE1 A:HIS261 3.1 47.1 1.0
CG A:ASN87 3.3 46.2 1.0
CD A:GLU44 3.4 52.7 1.0
CD2 A:HIS261 3.4 47.5 1.0
CD2 A:HIS259 3.6 41.9 1.0
ND2 A:ASN87 3.6 45.0 1.0
OE1 A:GLU44 3.9 57.4 1.0
O A:GLY293 4.1 35.8 1.0
ND1 A:HIS261 4.3 48.7 1.0
OD2 A:ASP11 4.3 65.0 1.0
ND1 A:HIS259 4.3 41.2 1.0
CA A:GLY293 4.4 36.8 1.0
CD2 A:HIS88 4.4 41.3 1.0
CG A:HIS261 4.5 46.7 1.0
CG A:GLU44 4.6 46.5 1.0
CB A:ASN87 4.6 41.6 1.0
CG A:HIS259 4.6 41.7 1.0
C A:GLY293 4.7 39.0 1.0
N A:ASN87 4.8 35.5 1.0
NE2 A:HIS88 4.9 42.9 1.0

Reference:

Y.Nakashima, M.Hiroyuki. Crystal Structure of Lasso Peptide Epimerase Mslh H295N To Be Published.
Page generated: Thu Jul 10 05:24:07 2025

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