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Calcium in PDB 8qyk: Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion.

Calcium Binding Sites:

The binding sites of Calcium atom in the Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion. (pdb code 8qyk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion., PDB code: 8qyk:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 8qyk

Go back to Calcium Binding Sites List in 8qyk
Calcium binding site 1 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:19.8
occ:1.00
 O B:ASP217 2.3 19.3 1.0
O B:HOH706 2.3 19.0 1.0
O B:TYR220 2.3 28.6 1.0
OE1 A:GLU89 2.5 22.7 1.0
OE1 A:GLU86 2.6 24.3 1.0
OE2 A:GLU89 2.8 33.1 1.0
O A:HOH607 2.8 17.3 1.0
CD A:GLU89 3.0 25.1 1.0
OE2 A:GLU86 3.1 21.4 1.0
CD A:GLU86 3.2 21.6 1.0
C B:ASP217 3.3 11.4 1.0
C B:TYR220 3.5 10.6 1.0
O A:HOH604 4.1 24.7 1.0
CA B:ASP217 4.1 13.6 1.0
N B:SER218 4.1 19.5 1.0
CA B:ASP221 4.2 17.9 1.0
CB B:ASP217 4.2 9.8 1.0
CA B:SER218 4.2 18.4 1.0
N B:ASP221 4.2 14.7 1.0
O B:HOH725 4.3 26.5 1.0
N B:TYR220 4.3 11.3 1.0
CG A:GLU89 4.5 26.2 1.0
CA B:TYR220 4.5 17.9 1.0
C B:SER218 4.6 17.9 1.0
CG A:GLU86 4.7 19.3 1.0
N B:SER222 4.8 21.4 1.0
OD1 B:ASP221 4.8 32.4 1.0
C B:ASP221 4.8 20.6 1.0
O A:HOH621 4.9 26.3 1.0
O B:HOH605 4.9 22.1 1.0
O B:HOH664 5.0 21.5 1.0
N B:LEU219 5.0 15.8 1.0
CB B:ALA109 5.0 19.0 1.0

Calcium binding site 2 out of 5 in 8qyk

Go back to Calcium Binding Sites List in 8qyk
Calcium binding site 2 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca503

b:20.7
occ:1.00
 O C:ASP217 2.3 25.7 1.0
O C:TYR220 2.3 27.4 1.0
OE1 B:GLU89 2.4 29.0 1.0
OE1 B:GLU86 2.5 26.2 1.0
O B:HOH615 2.7 18.2 1.0
O B:HOH730 2.8 19.0 1.0
OE2 B:GLU86 3.0 24.8 1.0
OE2 B:GLU89 3.0 35.5 1.0
CD B:GLU89 3.1 27.8 1.0
CD B:GLU86 3.1 23.4 1.0
C C:ASP217 3.3 15.4 1.0
C C:TYR220 3.5 14.6 1.0
CA C:ASP217 4.1 14.6 1.0
CA C:ASP221 4.2 22.9 1.0
O B:HOH603 4.2 26.1 1.0
N C:ASP221 4.2 16.7 1.0
CB C:ASP217 4.3 9.4 1.0
N C:SER218 4.3 15.2 1.0
N C:TYR220 4.4 17.1 1.0
CA C:SER218 4.4 17.2 1.0
CA C:TYR220 4.5 18.9 1.0
CG B:GLU89 4.5 23.3 1.0
CG B:GLU86 4.6 21.8 1.0
C C:SER218 4.7 20.3 1.0
N C:SER222 4.7 20.4 1.0
OD2 C:ASP221 4.7 33.6 1.0
C C:ASP221 4.8 18.5 1.0
OG C:SER222 4.9 33.1 1.0
O C:SER218 4.9 30.4 1.0
O B:HOH668 4.9 34.6 1.0

Calcium binding site 3 out of 5 in 8qyk

Go back to Calcium Binding Sites List in 8qyk
Calcium binding site 3 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca503

b:17.9
occ:1.00
 O D:ASP217 2.3 20.2 1.0
OE2 C:GLU89 2.3 34.5 1.0
O D:HOH684 2.3 15.2 1.0
O D:TYR220 2.4 27.7 1.0
OE1 C:GLU86 2.7 27.4 1.0
O C:HOH732 2.9 24.6 1.0
OE1 C:GLU89 3.0 26.7 1.0
CD C:GLU89 3.0 30.6 1.0
OE2 C:GLU86 3.3 27.3 1.0
CD C:GLU86 3.4 25.6 1.0
C D:TYR220 3.4 11.2 1.0
C D:ASP217 3.4 9.4 1.0
CA D:ASP221 4.0 20.0 1.0
N D:ASP221 4.0 20.3 1.0
O C:HOH706 4.1 25.5 1.0
N D:TYR220 4.2 12.1 1.0
O D:HOH649 4.3 24.6 1.0
CA D:ASP217 4.3 14.2 1.0
N D:SER218 4.3 16.0 1.0
CA D:SER218 4.4 11.4 1.0
CA D:TYR220 4.4 18.8 1.0
C D:SER218 4.4 12.3 1.0
CG C:GLU89 4.5 28.6 1.0
OD2 D:ASP221 4.6 39.0 1.0
CB D:ASP217 4.6 12.9 1.0
C D:ASP221 4.7 23.8 1.0
O D:SER218 4.7 23.7 1.0
N D:SER222 4.7 24.5 1.0
N D:LEU219 4.8 13.9 1.0
CG C:GLU86 4.8 23.7 1.0
CB D:ALA109 5.0 16.4 1.0
O D:HOH615 5.0 21.5 1.0

Calcium binding site 4 out of 5 in 8qyk

Go back to Calcium Binding Sites List in 8qyk
Calcium binding site 4 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca503

b:18.7
occ:1.00
 O E:ASP217 2.2 23.5 1.0
OE1 D:GLU89 2.3 28.8 1.0
O E:TYR220 2.3 31.6 1.0
O D:HOH647 2.6 16.3 1.0
OE1 D:GLU86 2.8 31.9 1.0
O D:HOH690 2.8 22.8 1.0
OE2 D:GLU89 2.9 33.6 1.0
CD D:GLU89 3.0 25.6 1.0
OE2 D:GLU86 3.0 22.8 1.0
CD D:GLU86 3.2 24.6 1.0
C E:ASP217 3.3 12.1 1.0
C E:TYR220 3.4 11.4 1.0
CA E:ASP221 4.1 16.6 1.0
N E:ASP221 4.1 13.6 1.0
CA E:ASP217 4.2 17.3 1.0
N E:SER218 4.2 17.1 1.0
CA E:SER218 4.3 17.9 1.0
N E:TYR220 4.3 12.4 1.0
CB E:ASP217 4.4 11.6 1.0
OD1 E:ASP221 4.4 27.7 1.0
CA E:TYR220 4.4 16.0 1.0
CG D:GLU89 4.4 17.0 1.0
C E:SER218 4.5 13.4 1.0
N E:SER222 4.6 17.4 1.0
CG D:GLU86 4.8 21.7 1.0
C E:ASP221 4.8 16.7 1.0
O E:SER218 4.8 23.0 1.0
O D:HOH648 4.9 24.0 1.0

Calcium binding site 5 out of 5 in 8qyk

Go back to Calcium Binding Sites List in 8qyk
Calcium binding site 5 out of 5 in the Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca503

b:21.0
occ:1.00
 O A:ASP217 2.2 24.9 1.0
O A:TYR220 2.3 20.1 1.0
OE1 E:GLU89 2.5 26.8 1.0
O E:HOH706 2.6 17.3 1.0
OE1 E:GLU86 2.7 27.9 1.0
O E:HOH627 2.8 16.9 1.0
OE2 E:GLU86 3.0 30.1 1.0
OE2 E:GLU89 3.1 40.3 1.0
CD E:GLU89 3.1 32.0 1.0
CD E:GLU86 3.2 25.2 1.0
C A:ASP217 3.3 14.1 1.0
C A:TYR220 3.5 11.5 1.0
O A:HOH706 4.1 23.2 1.0
CA A:ASP217 4.2 14.4 1.0
N A:SER218 4.2 18.9 1.0
CA A:ASP221 4.2 19.4 1.0
N A:ASP221 4.2 19.7 1.0
CA A:SER218 4.2 14.2 1.0
N A:TYR220 4.3 16.6 1.0
CB A:ASP217 4.3 15.1 1.0
CA A:TYR220 4.5 21.7 1.0
CG E:GLU89 4.6 24.2 1.0
C A:SER218 4.6 14.3 1.0
OD2 A:ASP221 4.7 31.2 1.0
CG E:GLU86 4.7 23.0 1.0
N A:SER222 4.7 17.0 1.0
O A:HOH630 4.7 19.3 1.0
C A:ASP221 4.8 18.4 1.0
O E:HOH657 4.9 22.5 1.0
O E:HOH602 5.0 35.5 1.0
N A:LEU219 5.0 16.2 1.0

Reference:

H.Hu, N.M.I.Taylor. Zorya Anti-Bacteriophage Defense System Zorab, Zora DELTA_359-592, Zora Tail Middle Deletion. To Be Published.
Page generated: Thu Jul 10 06:47:12 2025

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