Calcium in PDB 8rcd: RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
(pdb code 8rcd). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna, PDB code: 8rcd:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 1 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca402
b:48.4
occ:1.00
|
O2B
|
A:ATP401
|
2.2
|
55.1
|
1.0
|
|
OG1
|
A:THR134
|
2.3
|
54.5
|
1.0
|
|
O2G
|
A:ATP401
|
2.3
|
63.1
|
1.0
|
|
OE1
|
A:GLU163
|
2.9
|
70.2
|
1.0
|
|
CB
|
A:THR134
|
3.4
|
47.0
|
1.0
|
|
PB
|
A:ATP401
|
3.5
|
49.8
|
1.0
|
|
PG
|
A:ATP401
|
3.6
|
58.8
|
1.0
|
|
O3B
|
A:ATP401
|
3.7
|
52.1
|
1.0
|
|
OG1
|
A:THR165
|
3.8
|
65.1
|
1.0
|
|
CD
|
A:GLU163
|
3.9
|
70.0
|
1.0
|
|
OD2
|
A:ASP222
|
4.2
|
59.2
|
1.0
|
|
OE2
|
A:GLU163
|
4.2
|
68.4
|
1.0
|
|
CG2
|
A:THR134
|
4.2
|
47.1
|
1.0
|
|
O1A
|
A:ATP401
|
4.3
|
53.1
|
1.0
|
|
CB
|
A:THR165
|
4.3
|
59.9
|
1.0
|
|
O3A
|
A:ATP401
|
4.3
|
48.7
|
1.0
|
|
CG2
|
A:THR165
|
4.3
|
56.1
|
1.0
|
|
OD1
|
A:ASP222
|
4.4
|
60.7
|
1.0
|
|
CA
|
A:THR134
|
4.5
|
43.4
|
1.0
|
|
N
|
A:THR134
|
4.5
|
43.5
|
1.0
|
|
O1G
|
A:ATP401
|
4.5
|
49.2
|
1.0
|
|
O3G
|
A:ATP401
|
4.6
|
59.2
|
1.0
|
|
O1B
|
A:ATP401
|
4.6
|
47.7
|
1.0
|
|
PA
|
A:ATP401
|
4.7
|
51.7
|
1.0
|
|
CG
|
A:ASP222
|
4.7
|
57.0
|
1.0
|
|
O2A
|
A:ATP401
|
4.8
|
54.4
|
1.0
|
|
Calcium binding site 2 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 2 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca403
b:50.7
occ:1.00
|
O3G
|
A:ATP401
|
2.1
|
59.2
|
1.0
|
|
PG
|
A:ATP401
|
3.5
|
58.8
|
1.0
|
|
O2G
|
A:ATP401
|
3.9
|
63.1
|
1.0
|
|
O1G
|
A:ATP401
|
4.4
|
49.2
|
1.0
|
|
CB
|
A:PHE129
|
4.4
|
41.5
|
1.0
|
|
O3B
|
A:ATP401
|
4.5
|
52.1
|
1.0
|
|
CD2
|
A:PHE129
|
4.8
|
39.8
|
1.0
|
|
Calcium binding site 3 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 3 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca404
b:50.7
occ:1.00
|
O3G
|
B:ATP400
|
2.1
|
59.2
|
1.0
|
|
O
|
A:SER296
|
2.2
|
39.1
|
1.0
|
|
O
|
A:ALA293
|
2.4
|
34.6
|
1.0
|
|
OD2
|
A:ASP316
|
2.6
|
51.0
|
1.0
|
|
O
|
A:HIS294
|
3.1
|
37.4
|
1.0
|
|
C
|
A:SER296
|
3.4
|
42.0
|
1.0
|
|
PG
|
B:ATP400
|
3.5
|
58.8
|
1.0
|
|
C
|
A:ALA293
|
3.6
|
32.0
|
1.0
|
|
C
|
A:HIS294
|
3.6
|
30.5
|
1.0
|
|
CG
|
A:ASP316
|
3.8
|
48.7
|
1.0
|
|
CA
|
A:HIS294
|
3.8
|
26.5
|
1.0
|
|
O2G
|
B:ATP400
|
3.9
|
63.1
|
1.0
|
|
N
|
A:SER296
|
4.2
|
34.9
|
1.0
|
|
N
|
A:HIS294
|
4.2
|
28.1
|
1.0
|
|
CA
|
A:SER296
|
4.3
|
38.3
|
1.0
|
|
N
|
A:THR297
|
4.4
|
40.8
|
1.0
|
|
OD1
|
A:ASP316
|
4.4
|
51.1
|
1.0
|
|
O1G
|
B:ATP400
|
4.4
|
49.2
|
1.0
|
|
CB
|
B:PHE129
|
4.4
|
41.5
|
1.0
|
|
CA
|
A:THR297
|
4.4
|
42.8
|
1.0
|
|
O3B
|
B:ATP400
|
4.5
|
52.1
|
1.0
|
|
N
|
A:ALA295
|
4.6
|
28.8
|
1.0
|
|
CB
|
A:SER296
|
4.6
|
37.4
|
1.0
|
|
C
|
A:ALA295
|
4.7
|
33.0
|
1.0
|
|
CA
|
A:ALA293
|
4.8
|
29.4
|
1.0
|
|
CD2
|
B:PHE129
|
4.8
|
39.8
|
1.0
|
|
C
|
A:THR297
|
4.8
|
44.3
|
1.0
|
|
O
|
A:THR297
|
4.9
|
46.2
|
1.0
|
|
CB
|
A:ASP316
|
4.9
|
40.5
|
1.0
|
|
Calcium binding site 4 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 4 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:48.4
occ:1.00
|
O2B
|
B:ATP400
|
2.2
|
55.1
|
1.0
|
|
OG1
|
B:THR134
|
2.3
|
54.5
|
1.0
|
|
O2G
|
B:ATP400
|
2.3
|
63.1
|
1.0
|
|
OE1
|
B:GLU163
|
2.9
|
70.2
|
1.0
|
|
CB
|
B:THR134
|
3.4
|
47.0
|
1.0
|
|
PB
|
B:ATP400
|
3.5
|
49.8
|
1.0
|
|
PG
|
B:ATP400
|
3.6
|
58.8
|
1.0
|
|
O3B
|
B:ATP400
|
3.7
|
52.1
|
1.0
|
|
OG1
|
B:THR165
|
3.8
|
65.1
|
1.0
|
|
CD
|
B:GLU163
|
3.9
|
70.0
|
1.0
|
|
OD2
|
B:ASP222
|
4.2
|
59.2
|
1.0
|
|
OE2
|
B:GLU163
|
4.2
|
68.4
|
1.0
|
|
CG2
|
B:THR134
|
4.2
|
47.1
|
1.0
|
|
O1A
|
B:ATP400
|
4.3
|
53.1
|
1.0
|
|
CB
|
B:THR165
|
4.3
|
59.9
|
1.0
|
|
O3A
|
B:ATP400
|
4.3
|
48.7
|
1.0
|
|
CG2
|
B:THR165
|
4.3
|
56.1
|
1.0
|
|
OD1
|
B:ASP222
|
4.4
|
60.7
|
1.0
|
|
CA
|
B:THR134
|
4.5
|
43.4
|
1.0
|
|
N
|
B:THR134
|
4.5
|
43.5
|
1.0
|
|
O1G
|
B:ATP400
|
4.5
|
49.2
|
1.0
|
|
O3G
|
B:ATP400
|
4.6
|
59.2
|
1.0
|
|
O1B
|
B:ATP400
|
4.6
|
47.7
|
1.0
|
|
PA
|
B:ATP400
|
4.7
|
51.7
|
1.0
|
|
CG
|
B:ASP222
|
4.7
|
57.0
|
1.0
|
|
O2A
|
B:ATP400
|
4.8
|
54.4
|
1.0
|
|
Calcium binding site 5 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 5 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca402
b:50.7
occ:1.00
|
O
|
B:SER296
|
2.1
|
39.1
|
1.0
|
|
O3G
|
C:ATP400
|
2.1
|
59.2
|
1.0
|
|
O
|
B:ALA293
|
2.4
|
34.6
|
1.0
|
|
OD2
|
B:ASP316
|
2.6
|
51.0
|
1.0
|
|
O
|
B:HIS294
|
3.2
|
37.4
|
1.0
|
|
C
|
B:SER296
|
3.3
|
42.0
|
1.0
|
|
PG
|
C:ATP400
|
3.5
|
58.8
|
1.0
|
|
C
|
B:ALA293
|
3.6
|
32.0
|
1.0
|
|
C
|
B:HIS294
|
3.7
|
30.5
|
1.0
|
|
CG
|
B:ASP316
|
3.8
|
48.7
|
1.0
|
|
CA
|
B:HIS294
|
3.9
|
26.5
|
1.0
|
|
O2G
|
C:ATP400
|
3.9
|
63.1
|
1.0
|
|
N
|
B:SER296
|
4.1
|
34.9
|
1.0
|
|
CA
|
B:SER296
|
4.1
|
38.3
|
1.0
|
|
N
|
B:THR297
|
4.2
|
40.8
|
1.0
|
|
N
|
B:HIS294
|
4.2
|
28.1
|
1.0
|
|
CA
|
B:THR297
|
4.3
|
42.8
|
1.0
|
|
OD1
|
B:ASP316
|
4.4
|
51.1
|
1.0
|
|
O1G
|
C:ATP400
|
4.4
|
49.2
|
1.0
|
|
CB
|
C:PHE129
|
4.4
|
41.5
|
1.0
|
|
O3B
|
C:ATP400
|
4.5
|
52.1
|
1.0
|
|
CB
|
B:SER296
|
4.5
|
37.4
|
1.0
|
|
N
|
B:ALA295
|
4.6
|
28.8
|
1.0
|
|
C
|
B:ALA295
|
4.6
|
33.0
|
1.0
|
|
C
|
B:THR297
|
4.7
|
44.3
|
1.0
|
|
CA
|
B:ALA293
|
4.8
|
29.4
|
1.0
|
|
O
|
B:THR297
|
4.8
|
46.2
|
1.0
|
|
CD2
|
C:PHE129
|
4.8
|
39.8
|
1.0
|
|
CB
|
B:ASP316
|
4.9
|
40.5
|
1.0
|
|
Calcium binding site 6 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 6 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca401
b:48.4
occ:1.00
|
O2B
|
C:ATP400
|
2.2
|
55.1
|
1.0
|
|
OG1
|
C:THR134
|
2.3
|
54.5
|
1.0
|
|
O2G
|
C:ATP400
|
2.3
|
63.1
|
1.0
|
|
OE1
|
C:GLU163
|
2.9
|
70.2
|
1.0
|
|
CB
|
C:THR134
|
3.4
|
47.0
|
1.0
|
|
PB
|
C:ATP400
|
3.5
|
49.8
|
1.0
|
|
PG
|
C:ATP400
|
3.6
|
58.8
|
1.0
|
|
O3B
|
C:ATP400
|
3.7
|
52.1
|
1.0
|
|
OG1
|
C:THR165
|
3.8
|
65.1
|
1.0
|
|
CD
|
C:GLU163
|
3.9
|
70.0
|
1.0
|
|
OD2
|
C:ASP222
|
4.2
|
59.2
|
1.0
|
|
OE2
|
C:GLU163
|
4.2
|
68.4
|
1.0
|
|
CG2
|
C:THR134
|
4.2
|
47.1
|
1.0
|
|
O1A
|
C:ATP400
|
4.3
|
53.1
|
1.0
|
|
CB
|
C:THR165
|
4.3
|
59.9
|
1.0
|
|
O3A
|
C:ATP400
|
4.3
|
48.7
|
1.0
|
|
CG2
|
C:THR165
|
4.3
|
56.1
|
1.0
|
|
OD1
|
C:ASP222
|
4.4
|
60.7
|
1.0
|
|
CA
|
C:THR134
|
4.5
|
43.4
|
1.0
|
|
O1G
|
C:ATP400
|
4.5
|
49.2
|
1.0
|
|
N
|
C:THR134
|
4.5
|
43.5
|
1.0
|
|
O3G
|
C:ATP400
|
4.6
|
59.2
|
1.0
|
|
O1B
|
C:ATP400
|
4.6
|
47.7
|
1.0
|
|
PA
|
C:ATP400
|
4.7
|
51.7
|
1.0
|
|
CG
|
C:ASP222
|
4.7
|
57.0
|
1.0
|
|
O2A
|
C:ATP400
|
4.8
|
54.4
|
1.0
|
|
Calcium binding site 7 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 7 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca402
b:50.7
occ:1.00
|
O3G
|
D:ATP400
|
2.1
|
59.2
|
1.0
|
|
O
|
C:SER296
|
2.2
|
39.1
|
1.0
|
|
O
|
C:ALA293
|
2.4
|
34.6
|
1.0
|
|
OD2
|
C:ASP316
|
2.4
|
51.0
|
1.0
|
|
O
|
C:HIS294
|
3.3
|
37.4
|
1.0
|
|
C
|
C:SER296
|
3.5
|
42.0
|
1.0
|
|
PG
|
D:ATP400
|
3.5
|
58.8
|
1.0
|
|
C
|
C:ALA293
|
3.6
|
32.0
|
1.0
|
|
CG
|
C:ASP316
|
3.6
|
48.7
|
1.0
|
|
C
|
C:HIS294
|
3.8
|
30.5
|
1.0
|
|
CA
|
C:HIS294
|
3.9
|
26.5
|
1.0
|
|
O2G
|
D:ATP400
|
3.9
|
63.1
|
1.0
|
|
OD1
|
C:ASP316
|
4.2
|
51.1
|
1.0
|
|
N
|
C:HIS294
|
4.2
|
28.1
|
1.0
|
|
N
|
C:SER296
|
4.2
|
34.9
|
1.0
|
|
CA
|
C:SER296
|
4.3
|
38.3
|
1.0
|
|
O1G
|
D:ATP400
|
4.4
|
49.2
|
1.0
|
|
CB
|
D:PHE129
|
4.4
|
41.5
|
1.0
|
|
N
|
C:THR297
|
4.4
|
40.8
|
1.0
|
|
O3B
|
D:ATP400
|
4.5
|
52.1
|
1.0
|
|
CA
|
C:THR297
|
4.5
|
42.8
|
1.0
|
|
CB
|
C:SER296
|
4.6
|
37.4
|
1.0
|
|
N
|
C:ALA295
|
4.7
|
28.8
|
1.0
|
|
CB
|
C:ASP316
|
4.7
|
40.5
|
1.0
|
|
CA
|
C:ALA293
|
4.7
|
29.4
|
1.0
|
|
C
|
C:ALA295
|
4.8
|
33.0
|
1.0
|
|
CD2
|
D:PHE129
|
4.8
|
39.8
|
1.0
|
|
C
|
C:THR297
|
4.8
|
44.3
|
1.0
|
|
O
|
C:THR297
|
4.9
|
46.2
|
1.0
|
|
Calcium binding site 8 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 8 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca401
b:48.4
occ:1.00
|
O2B
|
D:ATP400
|
2.2
|
55.1
|
1.0
|
|
OG1
|
D:THR134
|
2.3
|
54.5
|
1.0
|
|
O2G
|
D:ATP400
|
2.3
|
63.1
|
1.0
|
|
OE1
|
D:GLU163
|
2.9
|
70.2
|
1.0
|
|
CB
|
D:THR134
|
3.4
|
47.0
|
1.0
|
|
PB
|
D:ATP400
|
3.5
|
49.8
|
1.0
|
|
PG
|
D:ATP400
|
3.6
|
58.8
|
1.0
|
|
O3B
|
D:ATP400
|
3.7
|
52.1
|
1.0
|
|
OG1
|
D:THR165
|
3.8
|
65.1
|
1.0
|
|
CD
|
D:GLU163
|
3.9
|
70.0
|
1.0
|
|
OD2
|
D:ASP222
|
4.2
|
59.2
|
1.0
|
|
OE2
|
D:GLU163
|
4.2
|
68.4
|
1.0
|
|
CG2
|
D:THR134
|
4.2
|
47.1
|
1.0
|
|
O1A
|
D:ATP400
|
4.3
|
53.1
|
1.0
|
|
CB
|
D:THR165
|
4.3
|
59.9
|
1.0
|
|
O3A
|
D:ATP400
|
4.3
|
48.7
|
1.0
|
|
CG2
|
D:THR165
|
4.3
|
56.1
|
1.0
|
|
OD1
|
D:ASP222
|
4.4
|
60.7
|
1.0
|
|
CA
|
D:THR134
|
4.5
|
43.4
|
1.0
|
|
O1G
|
D:ATP400
|
4.5
|
49.2
|
1.0
|
|
N
|
D:THR134
|
4.5
|
43.5
|
1.0
|
|
O3G
|
D:ATP400
|
4.6
|
59.2
|
1.0
|
|
O1B
|
D:ATP400
|
4.6
|
47.7
|
1.0
|
|
PA
|
D:ATP400
|
4.7
|
51.7
|
1.0
|
|
CG
|
D:ASP222
|
4.7
|
57.0
|
1.0
|
|
O2A
|
D:ATP400
|
4.8
|
54.4
|
1.0
|
|
Calcium binding site 9 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 9 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca402
b:50.7
occ:1.00
|
O
|
D:SER296
|
2.1
|
39.1
|
1.0
|
|
O3G
|
E:ATP400
|
2.1
|
59.2
|
1.0
|
|
O
|
D:ALA293
|
2.5
|
34.6
|
1.0
|
|
OD2
|
D:ASP316
|
2.6
|
51.0
|
1.0
|
|
O
|
D:HIS294
|
3.1
|
37.4
|
1.0
|
|
C
|
D:SER296
|
3.3
|
42.0
|
1.0
|
|
PG
|
E:ATP400
|
3.5
|
58.8
|
1.0
|
|
C
|
D:HIS294
|
3.6
|
30.5
|
1.0
|
|
C
|
D:ALA293
|
3.7
|
32.0
|
1.0
|
|
CG
|
D:ASP316
|
3.8
|
48.7
|
1.0
|
|
CA
|
D:HIS294
|
3.9
|
26.5
|
1.0
|
|
O2G
|
E:ATP400
|
3.9
|
63.1
|
1.0
|
|
N
|
D:SER296
|
4.1
|
34.9
|
1.0
|
|
CA
|
D:SER296
|
4.2
|
38.3
|
1.0
|
|
N
|
D:HIS294
|
4.3
|
28.1
|
1.0
|
|
N
|
D:THR297
|
4.3
|
40.8
|
1.0
|
|
CA
|
D:THR297
|
4.4
|
42.8
|
1.0
|
|
OD1
|
D:ASP316
|
4.4
|
51.1
|
1.0
|
|
O1G
|
E:ATP400
|
4.4
|
49.2
|
1.0
|
|
CB
|
E:PHE129
|
4.4
|
41.5
|
1.0
|
|
O3B
|
E:ATP400
|
4.5
|
52.1
|
1.0
|
|
N
|
D:ALA295
|
4.6
|
28.8
|
1.0
|
|
CB
|
D:SER296
|
4.6
|
37.4
|
1.0
|
|
C
|
D:ALA295
|
4.6
|
33.0
|
1.0
|
|
C
|
D:THR297
|
4.8
|
44.3
|
1.0
|
|
CD2
|
E:PHE129
|
4.8
|
39.8
|
1.0
|
|
O
|
D:THR297
|
4.8
|
46.2
|
1.0
|
|
CA
|
D:ALA293
|
4.9
|
29.4
|
1.0
|
|
CB
|
D:ASP316
|
5.0
|
40.5
|
1.0
|
|
Calcium binding site 10 out
of 16 in 8rcd
Go back to
Calcium Binding Sites List in 8rcd
Calcium binding site 10 out
of 16 in the RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca401
b:48.4
occ:1.00
|
O2B
|
E:ATP400
|
2.2
|
55.1
|
1.0
|
|
OG1
|
E:THR134
|
2.3
|
54.5
|
1.0
|
|
O2G
|
E:ATP400
|
2.3
|
63.1
|
1.0
|
|
OE1
|
E:GLU163
|
2.9
|
70.2
|
1.0
|
|
CB
|
E:THR134
|
3.4
|
47.0
|
1.0
|
|
PB
|
E:ATP400
|
3.5
|
49.8
|
1.0
|
|
PG
|
E:ATP400
|
3.6
|
58.8
|
1.0
|
|
O3B
|
E:ATP400
|
3.7
|
52.1
|
1.0
|
|
OG1
|
E:THR165
|
3.8
|
65.1
|
1.0
|
|
CD
|
E:GLU163
|
3.9
|
70.0
|
1.0
|
|
OD2
|
E:ASP222
|
4.2
|
59.2
|
1.0
|
|
OE2
|
E:GLU163
|
4.2
|
68.4
|
1.0
|
|
CG2
|
E:THR134
|
4.2
|
47.1
|
1.0
|
|
O1A
|
E:ATP400
|
4.3
|
53.1
|
1.0
|
|
CB
|
E:THR165
|
4.3
|
59.9
|
1.0
|
|
O3A
|
E:ATP400
|
4.3
|
48.7
|
1.0
|
|
CG2
|
E:THR165
|
4.3
|
56.1
|
1.0
|
|
OD1
|
E:ASP222
|
4.4
|
60.7
|
1.0
|
|
CA
|
E:THR134
|
4.5
|
43.4
|
1.0
|
|
O1G
|
E:ATP400
|
4.5
|
49.2
|
1.0
|
|
N
|
E:THR134
|
4.5
|
43.5
|
1.0
|
|
O3G
|
E:ATP400
|
4.6
|
59.2
|
1.0
|
|
O1B
|
E:ATP400
|
4.6
|
47.7
|
1.0
|
|
PA
|
E:ATP400
|
4.7
|
51.7
|
1.0
|
|
CG
|
E:ASP222
|
4.7
|
57.0
|
1.0
|
|
O2A
|
E:ATP400
|
4.8
|
54.4
|
1.0
|
|
Reference:
R.Appleby,
L.Pellegrini.
Cryoem Structure of RAD51 Nucleoprotein Filament on Abasic Single-Stranded Dna To Be Published.
Page generated: Thu Jul 10 06:51:14 2025
|
