Calcium in PDB 8rcf: RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
(pdb code 8rcf). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna, PDB code: 8rcf:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 1 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca401
b:75.8
occ:1.00
|
OG1
|
A:THR134
|
2.1
|
79.3
|
1.0
|
|
O2G
|
A:ATP403
|
2.1
|
86.0
|
1.0
|
|
O2B
|
A:ATP403
|
2.3
|
86.0
|
1.0
|
|
OE1
|
A:GLU163
|
3.2
|
85.9
|
1.0
|
|
PG
|
A:ATP403
|
3.4
|
86.0
|
1.0
|
|
CB
|
A:THR134
|
3.4
|
79.3
|
1.0
|
|
PB
|
A:ATP403
|
3.5
|
86.0
|
1.0
|
|
O3B
|
A:ATP403
|
3.6
|
86.0
|
1.0
|
|
OG1
|
A:THR165
|
3.8
|
85.6
|
1.0
|
|
CG2
|
A:THR134
|
3.9
|
79.3
|
1.0
|
|
O1A
|
A:ATP403
|
4.0
|
86.0
|
1.0
|
|
O1G
|
A:ATP403
|
4.1
|
86.0
|
1.0
|
|
OD2
|
A:ASP222
|
4.1
|
84.0
|
1.0
|
|
O3A
|
A:ATP403
|
4.3
|
86.0
|
1.0
|
|
CD
|
A:GLU163
|
4.3
|
85.9
|
1.0
|
|
CB
|
A:THR165
|
4.4
|
85.6
|
1.0
|
|
OD1
|
A:ASP222
|
4.4
|
84.0
|
1.0
|
|
PA
|
A:ATP403
|
4.5
|
86.0
|
1.0
|
|
CA
|
A:THR134
|
4.5
|
79.3
|
1.0
|
|
O3G
|
A:ATP403
|
4.5
|
86.0
|
1.0
|
|
CG2
|
A:THR165
|
4.5
|
85.6
|
1.0
|
|
N
|
A:THR134
|
4.6
|
79.3
|
1.0
|
|
OE2
|
A:GLU163
|
4.6
|
85.9
|
1.0
|
|
O2A
|
A:ATP403
|
4.6
|
86.0
|
1.0
|
|
O1B
|
A:ATP403
|
4.7
|
86.0
|
1.0
|
|
CG
|
A:ASP222
|
4.7
|
84.0
|
1.0
|
|
Calcium binding site 2 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 2 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca402
b:50.5
occ:1.00
|
O3G
|
A:ATP403
|
2.2
|
86.0
|
1.0
|
|
PG
|
A:ATP403
|
3.7
|
86.0
|
1.0
|
|
O2G
|
A:ATP403
|
4.1
|
86.0
|
1.0
|
|
O3B
|
A:ATP403
|
4.5
|
86.0
|
1.0
|
|
CB
|
A:PHE129
|
4.5
|
75.6
|
1.0
|
|
O1G
|
A:ATP403
|
4.6
|
86.0
|
1.0
|
|
CD2
|
A:PHE129
|
4.9
|
75.6
|
1.0
|
|
Calcium binding site 3 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 3 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca404
b:50.5
occ:1.00
|
O3G
|
B:ATP402
|
2.2
|
86.0
|
1.0
|
|
O
|
A:ALA293
|
2.3
|
63.7
|
1.0
|
|
O
|
A:SER296
|
2.3
|
66.4
|
1.0
|
|
OD2
|
A:ASP316
|
2.7
|
79.1
|
1.0
|
|
O
|
A:HIS294
|
3.0
|
67.1
|
1.0
|
|
C
|
A:SER296
|
3.4
|
66.4
|
1.0
|
|
C
|
A:ALA293
|
3.4
|
63.7
|
1.0
|
|
C
|
A:HIS294
|
3.6
|
67.1
|
1.0
|
|
PG
|
B:ATP402
|
3.7
|
86.0
|
1.0
|
|
CA
|
A:HIS294
|
3.7
|
67.1
|
1.0
|
|
CG
|
A:ASP316
|
3.7
|
79.1
|
1.0
|
|
N
|
A:HIS294
|
4.0
|
67.1
|
1.0
|
|
N
|
A:SER296
|
4.1
|
66.4
|
1.0
|
|
O2G
|
B:ATP402
|
4.1
|
86.0
|
1.0
|
|
CA
|
A:SER296
|
4.2
|
66.4
|
1.0
|
|
N
|
A:THR297
|
4.4
|
74.0
|
1.0
|
|
CB
|
A:SER296
|
4.4
|
66.4
|
1.0
|
|
O3B
|
B:ATP402
|
4.5
|
86.0
|
1.0
|
|
OD1
|
A:ASP316
|
4.5
|
79.1
|
1.0
|
|
CB
|
B:PHE129
|
4.5
|
75.6
|
1.0
|
|
O
|
A:THR297
|
4.5
|
74.0
|
1.0
|
|
CA
|
A:THR297
|
4.6
|
74.0
|
1.0
|
|
N
|
A:ALA295
|
4.6
|
65.1
|
1.0
|
|
CA
|
A:ALA293
|
4.6
|
63.7
|
1.0
|
|
C
|
A:ALA295
|
4.6
|
65.1
|
1.0
|
|
CB
|
A:ASP316
|
4.6
|
79.1
|
1.0
|
|
O1G
|
B:ATP402
|
4.6
|
86.0
|
1.0
|
|
C
|
A:THR297
|
4.7
|
74.0
|
1.0
|
|
CD
|
A:ARG299
|
4.7
|
72.0
|
1.0
|
|
CG
|
A:ARG299
|
4.9
|
72.0
|
1.0
|
|
CD2
|
B:PHE129
|
4.9
|
75.6
|
1.0
|
|
Calcium binding site 4 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 4 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:75.8
occ:1.00
|
OG1
|
B:THR134
|
2.1
|
79.3
|
1.0
|
|
O2G
|
B:ATP402
|
2.1
|
86.0
|
1.0
|
|
O2B
|
B:ATP402
|
2.3
|
86.0
|
1.0
|
|
OE1
|
B:GLU163
|
3.2
|
85.9
|
1.0
|
|
PG
|
B:ATP402
|
3.4
|
86.0
|
1.0
|
|
CB
|
B:THR134
|
3.4
|
79.3
|
1.0
|
|
PB
|
B:ATP402
|
3.5
|
86.0
|
1.0
|
|
O3B
|
B:ATP402
|
3.6
|
86.0
|
1.0
|
|
OG1
|
B:THR165
|
3.8
|
85.6
|
1.0
|
|
CG2
|
B:THR134
|
3.9
|
79.3
|
1.0
|
|
O1A
|
B:ATP402
|
4.0
|
86.0
|
1.0
|
|
O1G
|
B:ATP402
|
4.1
|
86.0
|
1.0
|
|
OD2
|
B:ASP222
|
4.1
|
84.0
|
1.0
|
|
O3A
|
B:ATP402
|
4.3
|
86.0
|
1.0
|
|
CD
|
B:GLU163
|
4.3
|
85.9
|
1.0
|
|
CB
|
B:THR165
|
4.4
|
85.6
|
1.0
|
|
OD1
|
B:ASP222
|
4.4
|
84.0
|
1.0
|
|
PA
|
B:ATP402
|
4.5
|
86.0
|
1.0
|
|
CA
|
B:THR134
|
4.5
|
79.3
|
1.0
|
|
O3G
|
B:ATP402
|
4.5
|
86.0
|
1.0
|
|
CG2
|
B:THR165
|
4.5
|
85.6
|
1.0
|
|
N
|
B:THR134
|
4.6
|
79.3
|
1.0
|
|
OE2
|
B:GLU163
|
4.6
|
85.9
|
1.0
|
|
O2A
|
B:ATP402
|
4.6
|
86.0
|
1.0
|
|
O1B
|
B:ATP402
|
4.7
|
86.0
|
1.0
|
|
CG
|
B:ASP222
|
4.7
|
84.0
|
1.0
|
|
Calcium binding site 5 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 5 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca403
b:50.5
occ:1.00
|
O
|
B:SER296
|
2.2
|
66.4
|
1.0
|
|
O3G
|
C:ATP402
|
2.2
|
86.0
|
1.0
|
|
O
|
B:ALA293
|
2.3
|
63.7
|
1.0
|
|
OD2
|
B:ASP316
|
2.8
|
79.1
|
1.0
|
|
O
|
B:HIS294
|
3.0
|
67.1
|
1.0
|
|
C
|
B:SER296
|
3.4
|
66.4
|
1.0
|
|
C
|
B:ALA293
|
3.4
|
63.7
|
1.0
|
|
C
|
B:HIS294
|
3.5
|
67.1
|
1.0
|
|
PG
|
C:ATP402
|
3.7
|
86.0
|
1.0
|
|
CA
|
B:HIS294
|
3.7
|
67.1
|
1.0
|
|
CG
|
B:ASP316
|
3.8
|
79.1
|
1.0
|
|
N
|
B:SER296
|
4.0
|
66.4
|
1.0
|
|
N
|
B:HIS294
|
4.0
|
67.1
|
1.0
|
|
O2G
|
C:ATP402
|
4.1
|
86.0
|
1.0
|
|
CA
|
B:SER296
|
4.1
|
66.4
|
1.0
|
|
N
|
B:THR297
|
4.3
|
74.0
|
1.0
|
|
CB
|
B:SER296
|
4.4
|
66.4
|
1.0
|
|
O3B
|
C:ATP402
|
4.5
|
86.0
|
1.0
|
|
O
|
B:THR297
|
4.5
|
74.0
|
1.0
|
|
CB
|
C:PHE129
|
4.5
|
75.6
|
1.0
|
|
OD1
|
B:ASP316
|
4.5
|
79.1
|
1.0
|
|
CA
|
B:THR297
|
4.5
|
74.0
|
1.0
|
|
C
|
B:ALA295
|
4.6
|
65.1
|
1.0
|
|
N
|
B:ALA295
|
4.6
|
65.1
|
1.0
|
|
CA
|
B:ALA293
|
4.6
|
63.7
|
1.0
|
|
C
|
B:THR297
|
4.6
|
74.0
|
1.0
|
|
O1G
|
C:ATP402
|
4.6
|
86.0
|
1.0
|
|
CB
|
B:ASP316
|
4.7
|
79.1
|
1.0
|
|
CD
|
B:ARG299
|
4.8
|
72.0
|
1.0
|
|
CG
|
B:ARG299
|
4.9
|
72.0
|
1.0
|
|
CD2
|
C:PHE129
|
4.9
|
75.6
|
1.0
|
|
Calcium binding site 6 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 6 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca401
b:75.8
occ:1.00
|
OG1
|
C:THR134
|
2.1
|
79.3
|
1.0
|
|
O2G
|
C:ATP402
|
2.1
|
86.0
|
1.0
|
|
O2B
|
C:ATP402
|
2.3
|
86.0
|
1.0
|
|
OE1
|
C:GLU163
|
3.2
|
85.9
|
1.0
|
|
PG
|
C:ATP402
|
3.4
|
86.0
|
1.0
|
|
CB
|
C:THR134
|
3.4
|
79.3
|
1.0
|
|
PB
|
C:ATP402
|
3.5
|
86.0
|
1.0
|
|
O3B
|
C:ATP402
|
3.6
|
86.0
|
1.0
|
|
OG1
|
C:THR165
|
3.8
|
85.6
|
1.0
|
|
CG2
|
C:THR134
|
3.9
|
79.3
|
1.0
|
|
O1A
|
C:ATP402
|
4.0
|
86.0
|
1.0
|
|
O1G
|
C:ATP402
|
4.1
|
86.0
|
1.0
|
|
OD2
|
C:ASP222
|
4.1
|
84.0
|
1.0
|
|
O3A
|
C:ATP402
|
4.3
|
86.0
|
1.0
|
|
CD
|
C:GLU163
|
4.3
|
85.9
|
1.0
|
|
CB
|
C:THR165
|
4.4
|
85.6
|
1.0
|
|
OD1
|
C:ASP222
|
4.4
|
84.0
|
1.0
|
|
PA
|
C:ATP402
|
4.5
|
86.0
|
1.0
|
|
CA
|
C:THR134
|
4.5
|
79.3
|
1.0
|
|
O3G
|
C:ATP402
|
4.5
|
86.0
|
1.0
|
|
CG2
|
C:THR165
|
4.5
|
85.6
|
1.0
|
|
N
|
C:THR134
|
4.6
|
79.3
|
1.0
|
|
OE2
|
C:GLU163
|
4.6
|
85.9
|
1.0
|
|
O2A
|
C:ATP402
|
4.6
|
86.0
|
1.0
|
|
O1B
|
C:ATP402
|
4.7
|
86.0
|
1.0
|
|
CG
|
C:ASP222
|
4.7
|
84.0
|
1.0
|
|
Calcium binding site 7 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 7 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca403
b:50.5
occ:1.00
|
O3G
|
D:ATP402
|
2.2
|
86.0
|
1.0
|
|
O
|
C:SER296
|
2.2
|
66.4
|
1.0
|
|
O
|
C:ALA293
|
2.3
|
63.7
|
1.0
|
|
OD2
|
C:ASP316
|
2.7
|
79.1
|
1.0
|
|
O
|
C:HIS294
|
3.0
|
67.1
|
1.0
|
|
C
|
C:SER296
|
3.4
|
66.4
|
1.0
|
|
C
|
C:ALA293
|
3.4
|
63.7
|
1.0
|
|
C
|
C:HIS294
|
3.6
|
67.1
|
1.0
|
|
PG
|
D:ATP402
|
3.7
|
86.0
|
1.0
|
|
CA
|
C:HIS294
|
3.7
|
67.1
|
1.0
|
|
CG
|
C:ASP316
|
3.8
|
79.1
|
1.0
|
|
N
|
C:SER296
|
4.0
|
66.4
|
1.0
|
|
N
|
C:HIS294
|
4.1
|
67.1
|
1.0
|
|
O2G
|
D:ATP402
|
4.1
|
86.0
|
1.0
|
|
CA
|
C:SER296
|
4.1
|
66.4
|
1.0
|
|
N
|
C:THR297
|
4.4
|
74.0
|
1.0
|
|
CB
|
C:SER296
|
4.4
|
66.4
|
1.0
|
|
O
|
C:THR297
|
4.5
|
74.0
|
1.0
|
|
O3B
|
D:ATP402
|
4.5
|
86.0
|
1.0
|
|
OD1
|
C:ASP316
|
4.5
|
79.1
|
1.0
|
|
CB
|
D:PHE129
|
4.5
|
75.6
|
1.0
|
|
CA
|
C:THR297
|
4.5
|
74.0
|
1.0
|
|
C
|
C:ALA295
|
4.6
|
65.1
|
1.0
|
|
N
|
C:ALA295
|
4.6
|
65.1
|
1.0
|
|
CB
|
C:ASP316
|
4.6
|
79.1
|
1.0
|
|
CA
|
C:ALA293
|
4.6
|
63.7
|
1.0
|
|
C
|
C:THR297
|
4.6
|
74.0
|
1.0
|
|
O1G
|
D:ATP402
|
4.6
|
86.0
|
1.0
|
|
CD
|
C:ARG299
|
4.7
|
72.0
|
1.0
|
|
CG
|
C:ARG299
|
4.9
|
72.0
|
1.0
|
|
CD2
|
D:PHE129
|
4.9
|
75.6
|
1.0
|
|
Calcium binding site 8 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 8 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca401
b:75.8
occ:1.00
|
OG1
|
D:THR134
|
2.1
|
79.3
|
1.0
|
|
O2G
|
D:ATP402
|
2.1
|
86.0
|
1.0
|
|
O2B
|
D:ATP402
|
2.3
|
86.0
|
1.0
|
|
OE1
|
D:GLU163
|
3.2
|
85.9
|
1.0
|
|
PG
|
D:ATP402
|
3.4
|
86.0
|
1.0
|
|
CB
|
D:THR134
|
3.4
|
79.3
|
1.0
|
|
PB
|
D:ATP402
|
3.5
|
86.0
|
1.0
|
|
O3B
|
D:ATP402
|
3.6
|
86.0
|
1.0
|
|
OG1
|
D:THR165
|
3.8
|
85.6
|
1.0
|
|
CG2
|
D:THR134
|
3.9
|
79.3
|
1.0
|
|
O1A
|
D:ATP402
|
4.0
|
86.0
|
1.0
|
|
O1G
|
D:ATP402
|
4.1
|
86.0
|
1.0
|
|
OD2
|
D:ASP222
|
4.1
|
84.0
|
1.0
|
|
O3A
|
D:ATP402
|
4.3
|
86.0
|
1.0
|
|
CD
|
D:GLU163
|
4.3
|
85.9
|
1.0
|
|
CB
|
D:THR165
|
4.4
|
85.6
|
1.0
|
|
OD1
|
D:ASP222
|
4.4
|
84.0
|
1.0
|
|
PA
|
D:ATP402
|
4.5
|
86.0
|
1.0
|
|
CA
|
D:THR134
|
4.5
|
79.3
|
1.0
|
|
O3G
|
D:ATP402
|
4.5
|
86.0
|
1.0
|
|
CG2
|
D:THR165
|
4.5
|
85.6
|
1.0
|
|
N
|
D:THR134
|
4.6
|
79.3
|
1.0
|
|
OE2
|
D:GLU163
|
4.6
|
85.9
|
1.0
|
|
O2A
|
D:ATP402
|
4.6
|
86.0
|
1.0
|
|
O1B
|
D:ATP402
|
4.7
|
86.0
|
1.0
|
|
CG
|
D:ASP222
|
4.7
|
84.0
|
1.0
|
|
Calcium binding site 9 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 9 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca403
b:50.5
occ:1.00
|
O
|
D:SER296
|
2.2
|
66.4
|
1.0
|
|
O3G
|
E:ATP402
|
2.2
|
86.0
|
1.0
|
|
O
|
D:ALA293
|
2.3
|
63.7
|
1.0
|
|
OD2
|
D:ASP316
|
2.7
|
79.1
|
1.0
|
|
O
|
D:HIS294
|
3.0
|
67.1
|
1.0
|
|
C
|
D:SER296
|
3.3
|
66.4
|
1.0
|
|
C
|
D:ALA293
|
3.5
|
63.7
|
1.0
|
|
C
|
D:HIS294
|
3.6
|
67.1
|
1.0
|
|
PG
|
E:ATP402
|
3.7
|
86.0
|
1.0
|
|
CA
|
D:HIS294
|
3.7
|
67.1
|
1.0
|
|
CG
|
D:ASP316
|
3.8
|
79.1
|
1.0
|
|
N
|
D:SER296
|
4.0
|
66.4
|
1.0
|
|
N
|
D:HIS294
|
4.1
|
67.1
|
1.0
|
|
O2G
|
E:ATP402
|
4.1
|
86.0
|
1.0
|
|
CA
|
D:SER296
|
4.1
|
66.4
|
1.0
|
|
N
|
D:THR297
|
4.3
|
74.0
|
1.0
|
|
CB
|
D:SER296
|
4.4
|
66.4
|
1.0
|
|
O
|
D:THR297
|
4.4
|
74.0
|
1.0
|
|
O3B
|
E:ATP402
|
4.5
|
86.0
|
1.0
|
|
CB
|
E:PHE129
|
4.5
|
75.6
|
1.0
|
|
OD1
|
D:ASP316
|
4.5
|
79.1
|
1.0
|
|
CA
|
D:THR297
|
4.5
|
74.0
|
1.0
|
|
C
|
D:ALA295
|
4.6
|
65.1
|
1.0
|
|
N
|
D:ALA295
|
4.6
|
65.1
|
1.0
|
|
C
|
D:THR297
|
4.6
|
74.0
|
1.0
|
|
O1G
|
E:ATP402
|
4.6
|
86.0
|
1.0
|
|
CB
|
D:ASP316
|
4.6
|
79.1
|
1.0
|
|
CA
|
D:ALA293
|
4.6
|
63.7
|
1.0
|
|
CD
|
D:ARG299
|
4.8
|
72.0
|
1.0
|
|
CG
|
D:ARG299
|
4.9
|
72.0
|
1.0
|
|
CD2
|
E:PHE129
|
4.9
|
75.6
|
1.0
|
|
Calcium binding site 10 out
of 16 in 8rcf
Go back to
Calcium Binding Sites List in 8rcf
Calcium binding site 10 out
of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca401
b:75.8
occ:1.00
|
OG1
|
E:THR134
|
2.1
|
79.3
|
1.0
|
|
O2G
|
E:ATP402
|
2.1
|
86.0
|
1.0
|
|
O2B
|
E:ATP402
|
2.3
|
86.0
|
1.0
|
|
OE1
|
E:GLU163
|
3.2
|
85.9
|
1.0
|
|
PG
|
E:ATP402
|
3.4
|
86.0
|
1.0
|
|
CB
|
E:THR134
|
3.4
|
79.3
|
1.0
|
|
PB
|
E:ATP402
|
3.5
|
86.0
|
1.0
|
|
O3B
|
E:ATP402
|
3.6
|
86.0
|
1.0
|
|
OG1
|
E:THR165
|
3.8
|
85.6
|
1.0
|
|
CG2
|
E:THR134
|
3.9
|
79.3
|
1.0
|
|
O1A
|
E:ATP402
|
4.0
|
86.0
|
1.0
|
|
O1G
|
E:ATP402
|
4.1
|
86.0
|
1.0
|
|
OD2
|
E:ASP222
|
4.1
|
84.0
|
1.0
|
|
O3A
|
E:ATP402
|
4.3
|
86.0
|
1.0
|
|
CD
|
E:GLU163
|
4.3
|
85.9
|
1.0
|
|
CB
|
E:THR165
|
4.4
|
85.6
|
1.0
|
|
OD1
|
E:ASP222
|
4.4
|
84.0
|
1.0
|
|
PA
|
E:ATP402
|
4.5
|
86.0
|
1.0
|
|
CA
|
E:THR134
|
4.5
|
79.3
|
1.0
|
|
O3G
|
E:ATP402
|
4.5
|
86.0
|
1.0
|
|
CG2
|
E:THR165
|
4.5
|
85.6
|
1.0
|
|
N
|
E:THR134
|
4.6
|
79.3
|
1.0
|
|
OE2
|
E:GLU163
|
4.6
|
85.9
|
1.0
|
|
O2A
|
E:ATP402
|
4.6
|
86.0
|
1.0
|
|
O1B
|
E:ATP402
|
4.7
|
86.0
|
1.0
|
|
CG
|
E:ASP222
|
4.7
|
84.0
|
1.0
|
|
Reference:
R.Appleby,
L.Pellegrini.
Cryoem Structure of the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna To Be Published.
Page generated: Thu Jul 10 06:51:52 2025
|
