Calcium in PDB 8rde: Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation

The binding sites of Calcium atom in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation (pdb code 8rde). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation, PDB code: 8rde:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca5602 b:40.0 occ:1.00 OD1 A:ASP1399 2.0 40.0 1.0 OD1 A:ASP1405 2.0 40.0 1.0 O A:ASN1401 2.1 40.0 1.0 OD1 A:ASN1397 2.2 40.0 1.0 OD1 A:ASN1404 2.2 40.0 1.0 OD2 A:ASP1265 2.2 40.0 1.0 CG A:ASP1399 3.1 40.0 1.0 CG A:ASP1405 3.1 40.0 1.0 C A:ASN1401 3.2 40.0 1.0 CG A:ASN1397 3.3 40.0 1.0 CG A:ASN1404 3.4 40.0 1.0 CG A:ASP1265 3.5 40.0 1.0 N A:ASN1401 3.6 40.0 1.0 OD2 A:ASP1405 3.7 40.0 1.0 ND2 A:ASN1397 3.8 40.0 1.0 CA A:ASN1401 3.8 40.0 1.0 N A:ASP1399 3.9 40.0 1.0 OD2 A:ASP1399 3.9 40.0 1.0 ND2 A:ASN1404 4.0 40.0 1.0 CB A:ASP1399 4.1 40.0 1.0 N A:ASP1405 4.1 40.0 1.0 N A:ASN1397 4.1 40.0 1.0 CB A:ASN1401 4.2 40.0 1.0 N A:HIS1402 4.3 40.0 1.0 CB A:ASP1405 4.3 40.0 1.0 N A:LYS1400 4.3 40.0 1.0 CB A:ASP1265 4.4 40.0 1.0 OD1 A:ASP1265 4.4 40.0 1.0 CA A:ASP1399 4.4 40.0 1.0 CA A:ASP1405 4.4 40.0 1.0 N A:MET1398 4.5 40.0 1.0 C A:ASN1404 4.5 40.0 1.0 CB A:ASN1397 4.5 40.0 1.0 CB A:ASN1404 4.5 40.0 1.0 C A:ASP1399 4.6 40.0 1.0 CA A:HIS1402 4.6 40.0 1.0 CA A:ASN1397 4.7 40.0 1.0 C A:LYS1400 4.7 40.0 1.0 C A:ASN1397 4.8 40.0 1.0 N A:ASN1404 4.8 40.0 1.0 CA A:ASN1404 4.8 40.0 1.0 C A:HIS1402 4.9 40.0 1.0 O A:HIS1402 4.9 40.0 1.0 C A:MET1398 5.0 40.0 1.0

Calcium binding site 2 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca5604 b:40.0 occ:1.00 OD1 A:ASP2174 2.1 40.0 1.0 OD1 A:ASN2168 2.1 40.0 1.0 O A:ASN2170 2.3 40.0 1.0 OD2 A:ASP2173 2.4 40.0 1.0 OD2 A:ASP2046 2.7 40.0 1.0 OD1 A:ASN2166 2.7 40.0 1.0 CG A:ASP2173 3.0 40.0 1.0 CB A:ASP2173 3.1 40.0 1.0 CG A:ASN2168 3.1 40.0 1.0 CG A:ASP2174 3.2 40.0 1.0 N A:ASP2174 3.3 40.0 1.0 C A:ASN2170 3.5 40.0 1.0 O A:ASN2166 3.5 40.0 1.0 O A:ASN2168 3.7 40.0 1.0 C A:ASP2173 3.8 40.0 1.0 CG A:ASP2046 3.8 40.0 1.0 CA A:ASP2173 3.8 40.0 1.0 CG A:ASN2166 3.9 40.0 1.0 N A:ASN2170 3.9 40.0 1.0 C A:ASN2168 3.9 40.0 1.0 ND2 A:ASN2168 4.0 40.0 1.0 OD2 A:ASP2174 4.0 40.0 1.0 N A:ASN2168 4.0 40.0 1.0 CB A:ASN2168 4.1 40.0 1.0 CA A:ASP2174 4.1 40.0 1.0 OD1 A:ASP2173 4.1 40.0 1.0 N A:ASP2173 4.1 40.0 1.0 CA A:ASN2168 4.2 40.0 1.0 CB A:ASP2174 4.2 40.0 1.0 OD1 A:ASP2046 4.2 40.0 1.0 CA A:ASN2170 4.3 40.0 1.0 C A:ASN2166 4.4 40.0 1.0 N A:TRP2171 4.4 40.0 1.0 ND2 A:ASN2166 4.6 40.0 1.0 CA A:TRP2171 4.6 40.0 1.0 N A:GLY2169 4.6 40.0 1.0 O A:ASP2173 4.6 40.0 1.0 C A:GLY2169 4.7 40.0 1.0 N A:ASN2166 4.7 40.0 1.0 C A:TRP2171 4.8 40.0 1.0 CB A:ASN2166 4.8 40.0 1.0 CA A:ASN2166 4.9 40.0 1.0 C A:PHE2167 5.0 40.0 1.0

Calcium binding site 3 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca5605 b:40.0 occ:1.00 OD1 A:ASP2554 2.1 40.0 1.0 OD1 A:ASP2560 2.2 40.0 1.0 OD1 A:ASN2559 2.2 40.0 1.0 O A:ASP2556 2.3 40.0 1.0 OD2 A:ASP2425 2.3 40.0 1.0 OD1 A:ASN2552 2.3 40.0 1.0 CG A:ASP2560 3.0 40.0 1.0 CB A:ASP2560 3.2 40.0 1.0 CG A:ASP2554 3.2 40.0 1.0 N A:ASP2560 3.3 40.0 1.0 C A:ASP2556 3.3 40.0 1.0 N A:ASP2556 3.4 40.0 1.0 CG A:ASN2552 3.4 40.0 1.0 CG A:ASN2559 3.5 40.0 1.0 CG A:ASP2425 3.5 40.0 1.0 CA A:ASP2560 3.5 40.0 1.0 OD2 A:ASP2554 3.8 40.0 1.0 CA A:ASP2556 3.8 40.0 1.0 N A:GLY2555 4.0 40.0 1.0 O A:ASN2552 4.1 40.0 1.0 ND2 A:ASN2552 4.1 40.0 1.0 OD2 A:ASP2560 4.2 40.0 1.0 C A:ASN2559 4.2 40.0 1.0 ND2 A:ASN2559 4.2 40.0 1.0 CB A:ASP2556 4.3 40.0 1.0 OD1 A:ASP2425 4.3 40.0 1.0 CB A:ASP2425 4.3 40.0 1.0 N A:ASP2554 4.4 40.0 1.0 C A:ASN2552 4.4 40.0 1.0 C A:GLY2555 4.4 40.0 1.0 CB A:ASP2554 4.4 40.0 1.0 N A:GLN2557 4.5 40.0 1.0 CB A:ASN2559 4.5 40.0 1.0 N A:ASN2552 4.6 40.0 1.0 CB A:ASN2552 4.6 40.0 1.0 CA A:ASN2559 4.7 40.0 1.0 CA A:ASN2552 4.7 40.0 1.0 CA A:ASP2554 4.7 40.0 1.0 CA A:GLY2555 4.7 40.0 1.0 C A:ASP2554 4.8 40.0 1.0 N A:ASN2559 4.9 40.0 1.0 CA A:GLN2557 4.9 40.0 1.0 C A:ASP2560 5.0 40.0 1.0

Calcium binding site 4 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca5606 b:40.0 occ:1.00 OD1 A:ASN1795 2.1 40.0 1.0 OD1 A:ASP1801 2.1 40.0 1.0 OD1 A:ASP1800 2.1 40.0 1.0 OD2 A:ASP1664 2.2 40.0 1.0 O A:ASN1797 2.3 40.0 1.0 OD1 A:ASN1793 2.4 40.0 1.0 O A:ASN1793 2.9 40.0 1.0 CG A:ASP1664 3.1 40.0 1.0 CG A:ASN1795 3.2 40.0 1.0 CG A:ASP1801 3.2 40.0 1.0 CG A:ASP1800 3.3 40.0 1.0 C A:ASN1797 3.4 40.0 1.0 OD1 A:ASP1664 3.5 40.0 1.0 CG A:ASN1793 3.6 40.0 1.0 ND2 A:ASN1795 3.6 40.0 1.0 N A:ASN1797 3.7 40.0 1.0 OD2 A:ASP1800 3.8 40.0 1.0 OD2 A:ASP1801 3.8 40.0 1.0 N A:ASP1801 3.9 40.0 1.0 CA A:ASN1797 4.0 40.0 1.0 C A:ASN1793 4.0 40.0 1.0 N A:ASN1795 4.0 40.0 1.0 CB A:ASP1664 4.2 40.0 1.0 CB A:ASN1797 4.2 40.0 1.0 CA A:ASP1801 4.3 40.0 1.0 C A:ASP1800 4.3 40.0 1.0 CB A:ASP1801 4.3 40.0 1.0 CB A:ASN1793 4.4 40.0 1.0 CB A:ASN1795 4.4 40.0 1.0 CB A:ASP1800 4.5 40.0 1.0 N A:PRO1798 4.5 40.0 1.0 N A:LYS1796 4.5 40.0 1.0 ND2 A:ASN1793 4.5 40.0 1.0 CA A:ASN1795 4.6 40.0 1.0 CA A:ASN1793 4.7 40.0 1.0 CA A:ASP1800 4.7 40.0 1.0 N A:ASN1793 4.7 40.0 1.0 N A:ASP1800 4.8 40.0 1.0 C A:ASN1795 4.8 40.0 1.0 O A:ASP1800 4.8 40.0 1.0 CA A:PRO1798 4.8 40.0 1.0 C A:LYS1796 4.9 40.0 1.0 N A:TYR1794 5.0 40.0 1.0

Calcium binding site 5 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca5602 b:40.0 occ:1.00 OD1 D:ASP1399 2.0 40.0 1.0 OD1 D:ASP1405 2.0 40.0 1.0 O D:ASN1401 2.1 40.0 1.0 OD1 D:ASN1397 2.2 40.0 1.0 OD1 D:ASN1404 2.2 40.0 1.0 OD2 D:ASP1265 2.2 40.0 1.0 CG D:ASP1399 3.1 40.0 1.0 CG D:ASP1405 3.1 40.0 1.0 C D:ASN1401 3.2 40.0 1.0 CG D:ASN1397 3.3 40.0 1.0 CG D:ASN1404 3.4 40.0 1.0 CG D:ASP1265 3.5 40.0 1.0 N D:ASN1401 3.6 40.0 1.0 OD2 D:ASP1405 3.7 40.0 1.0 ND2 D:ASN1397 3.8 40.0 1.0 CA D:ASN1401 3.8 40.0 1.0 N D:ASP1399 3.9 40.0 1.0 OD2 D:ASP1399 3.9 40.0 1.0 ND2 D:ASN1404 4.0 40.0 1.0 CB D:ASP1399 4.1 40.0 1.0 N D:ASP1405 4.1 40.0 1.0 N D:ASN1397 4.1 40.0 1.0 CB D:ASN1401 4.2 40.0 1.0 N D:HIS1402 4.3 40.0 1.0 CB D:ASP1405 4.3 40.0 1.0 N D:LYS1400 4.3 40.0 1.0 CB D:ASP1265 4.4 40.0 1.0 OD1 D:ASP1265 4.4 40.0 1.0 CA D:ASP1399 4.4 40.0 1.0 CA D:ASP1405 4.4 40.0 1.0 N D:MET1398 4.5 40.0 1.0 C D:ASN1404 4.5 40.0 1.0 CB D:ASN1397 4.5 40.0 1.0 CB D:ASN1404 4.5 40.0 1.0 C D:ASP1399 4.6 40.0 1.0 CA D:HIS1402 4.6 40.0 1.0 CA D:ASN1397 4.7 40.0 1.0 C D:LYS1400 4.7 40.0 1.0 C D:ASN1397 4.8 40.0 1.0 N D:ASN1404 4.8 40.0 1.0 CA D:ASN1404 4.8 40.0 1.0 C D:HIS1402 4.9 40.0 1.0 O D:HIS1402 4.9 40.0 1.0 C D:MET1398 5.0 40.0 1.0

Calcium binding site 6 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca5604 b:40.0 occ:1.00 OD1 D:ASP2174 2.1 40.0 1.0 OD1 D:ASN2168 2.1 40.0 1.0 O D:ASN2170 2.3 40.0 1.0 OD2 D:ASP2173 2.4 40.0 1.0 OD2 D:ASP2046 2.7 40.0 1.0 OD1 D:ASN2166 2.7 40.0 1.0 CG D:ASP2173 3.0 40.0 1.0 CB D:ASP2173 3.1 40.0 1.0 CG D:ASN2168 3.1 40.0 1.0 CG D:ASP2174 3.2 40.0 1.0 N D:ASP2174 3.3 40.0 1.0 C D:ASN2170 3.5 40.0 1.0 O D:ASN2166 3.5 40.0 1.0 O D:ASN2168 3.7 40.0 1.0 C D:ASP2173 3.8 40.0 1.0 CG D:ASP2046 3.8 40.0 1.0 CA D:ASP2173 3.8 40.0 1.0 CG D:ASN2166 3.9 40.0 1.0 N D:ASN2170 3.9 40.0 1.0 C D:ASN2168 3.9 40.0 1.0 ND2 D:ASN2168 4.0 40.0 1.0 OD2 D:ASP2174 4.0 40.0 1.0 N D:ASN2168 4.0 40.0 1.0 CB D:ASN2168 4.1 40.0 1.0 CA D:ASP2174 4.1 40.0 1.0 OD1 D:ASP2173 4.1 40.0 1.0 N D:ASP2173 4.1 40.0 1.0 CA D:ASN2168 4.2 40.0 1.0 CB D:ASP2174 4.2 40.0 1.0 OD1 D:ASP2046 4.2 40.0 1.0 CA D:ASN2170 4.3 40.0 1.0 C D:ASN2166 4.4 40.0 1.0 N D:TRP2171 4.4 40.0 1.0 ND2 D:ASN2166 4.6 40.0 1.0 CA D:TRP2171 4.6 40.0 1.0 N D:GLY2169 4.6 40.0 1.0 O D:ASP2173 4.6 40.0 1.0 C D:GLY2169 4.7 40.0 1.0 N D:ASN2166 4.7 40.0 1.0 C D:TRP2171 4.8 40.0 1.0 CB D:ASN2166 4.8 40.0 1.0 CA D:ASN2166 4.9 40.0 1.0 C D:PHE2167 5.0 40.0 1.0

Calcium binding site 7 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca5605 b:40.0 occ:1.00 OD1 D:ASP2554 2.1 40.0 1.0 OD1 D:ASP2560 2.2 40.0 1.0 OD1 D:ASN2559 2.2 40.0 1.0 O D:ASP2556 2.3 40.0 1.0 OD2 D:ASP2425 2.3 40.0 1.0 OD1 D:ASN2552 2.3 40.0 1.0 CG D:ASP2560 3.0 40.0 1.0 CB D:ASP2560 3.2 40.0 1.0 CG D:ASP2554 3.2 40.0 1.0 N D:ASP2560 3.3 40.0 1.0 C D:ASP2556 3.3 40.0 1.0 N D:ASP2556 3.4 40.0 1.0 CG D:ASN2552 3.4 40.0 1.0 CG D:ASN2559 3.5 40.0 1.0 CG D:ASP2425 3.5 40.0 1.0 CA D:ASP2560 3.5 40.0 1.0 OD2 D:ASP2554 3.8 40.0 1.0 CA D:ASP2556 3.8 40.0 1.0 N D:GLY2555 4.0 40.0 1.0 O D:ASN2552 4.1 40.0 1.0 ND2 D:ASN2552 4.1 40.0 1.0 OD2 D:ASP2560 4.2 40.0 1.0 C D:ASN2559 4.2 40.0 1.0 ND2 D:ASN2559 4.2 40.0 1.0 CB D:ASP2556 4.3 40.0 1.0 OD1 D:ASP2425 4.3 40.0 1.0 CB D:ASP2425 4.3 40.0 1.0 N D:ASP2554 4.4 40.0 1.0 C D:ASN2552 4.4 40.0 1.0 C D:GLY2555 4.4 40.0 1.0 CB D:ASP2554 4.4 40.0 1.0 N D:GLN2557 4.5 40.0 1.0 CB D:ASN2559 4.5 40.0 1.0 N D:ASN2552 4.6 40.0 1.0 CB D:ASN2552 4.6 40.0 1.0 CA D:ASN2559 4.7 40.0 1.0 CA D:ASN2552 4.7 40.0 1.0 CA D:ASP2554 4.7 40.0 1.0 CA D:GLY2555 4.7 40.0 1.0 C D:ASP2554 4.8 40.0 1.0 N D:ASN2559 4.9 40.0 1.0 CA D:GLN2557 4.9 40.0 1.0 C D:ASP2560 5.0 40.0 1.0

Calcium binding site 8 out of 8 in the Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the Mouse Fcgbp Dimer Protein in Its Compact Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca5606 b:40.0 occ:1.00 OD1 D:ASN1795 2.1 40.0 1.0 OD1 D:ASP1801 2.1 40.0 1.0 OD1 D:ASP1800 2.1 40.0 1.0 OD2 D:ASP1664 2.2 40.0 1.0 O D:ASN1797 2.3 40.0 1.0 OD1 D:ASN1793 2.4 40.0 1.0 O D:ASN1793 2.9 40.0 1.0 CG D:ASP1664 3.1 40.0 1.0 CG D:ASN1795 3.1 40.0 1.0 CG D:ASP1801 3.2 40.0 1.0 CG D:ASP1800 3.3 40.0 1.0 C D:ASN1797 3.4 40.0 1.0 OD1 D:ASP1664 3.5 40.0 1.0 CG D:ASN1793 3.6 40.0 1.0 ND2 D:ASN1795 3.6 40.0 1.0 N D:ASN1797 3.7 40.0 1.0 OD2 D:ASP1800 3.8 40.0 1.0 OD2 D:ASP1801 3.8 40.0 1.0 N D:ASP1801 3.9 40.0 1.0 CA D:ASN1797 4.0 40.0 1.0 C D:ASN1793 4.0 40.0 1.0 N D:ASN1795 4.0 40.0 1.0 CB D:ASP1664 4.2 40.0 1.0 CB D:ASN1797 4.2 40.0 1.0 CA D:ASP1801 4.3 40.0 1.0 C D:ASP1800 4.3 40.0 1.0 CB D:ASP1801 4.3 40.0 1.0 CB D:ASN1793 4.4 40.0 1.0 CB D:ASN1795 4.4 40.0 1.0 CB D:ASP1800 4.5 40.0 1.0 N D:PRO1798 4.5 40.0 1.0 N D:LYS1796 4.5 40.0 1.0 ND2 D:ASN1793 4.5 40.0 1.0 CA D:ASN1795 4.6 40.0 1.0 CA D:ASN1793 4.7 40.0 1.0 CA D:ASP1800 4.7 40.0 1.0 N D:ASN1793 4.7 40.0 1.0 N D:ASP1800 4.8 40.0 1.0 C D:ASN1795 4.8 40.0 1.0 O D:ASP1800 4.8 40.0 1.0 CA D:PRO1798 4.8 40.0 1.0 C D:LYS1796 4.9 40.0 1.0 N D:TYR1794 5.0 40.0 1.0

P.Gallego, G.C.Hansson. The Structure of Fcgbp Is Formed As A Disulfide-Mediated Homodimer Between Its C-Terminal Domains Febs J. 2025.
ISSN: ISSN 1742-464X