Calcium in PDB 8s9r: SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form

All present enzymatic activity of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form:
3.1.1.3;

The structure of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form, PDB code: 8s9r was solved by M.Fellner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.58 / 2.60
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	129.146, 129.146, 251.791, 90, 90, 90
R / Rfree (%)	19.9 / 22.4

The structure of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form (pdb code 8s9r). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form, PDB code: 8s9r:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:68.5 occ:0.49 OD2 A:ASP348 2.4 66.2 1.0 OD1 A:ASP351 2.5 67.2 1.0 OD2 A:ASP359 2.6 80.7 1.0 O A:HOH517 2.7 69.0 1.0 OD2 A:ASP351 2.7 66.5 1.0 OD2 A:ASP356 2.7 76.0 1.0 CG A:ASP351 2.9 65.3 1.0 O A:GLY283 2.9 76.1 1.0 CG A:ASP348 3.3 63.2 1.0 CG A:ASP359 3.6 84.8 1.0 OD1 A:ASP348 3.8 61.3 1.0 CB A:ASP359 3.8 79.7 1.0 CG A:ASP356 3.9 76.1 1.0 C A:GLY283 4.1 71.4 1.0 N A:PHE285 4.3 64.2 1.0 CB A:ASP356 4.3 72.2 1.0 CB A:ASP351 4.4 62.1 1.0 CG A:ARG362 4.4 78.5 1.0 CB A:ASP348 4.5 63.1 1.0 CD A:ARG362 4.6 75.8 1.0 CA A:THR284 4.7 68.5 1.0 O A:HOH528 4.7 68.1 1.0 O A:HOH571 4.7 70.1 1.0 OD1 A:ASP359 4.7 86.1 1.0 N A:THR284 4.8 68.7 1.0 C A:THR284 4.8 67.8 1.0 N A:ASP348 4.9 64.2 1.0 OD1 A:ASP356 4.9 73.3 1.0 N A:ASP351 5.0 58.1 1.0

Calcium binding site 2 out of 2 in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca404 b:67.2 occ:0.84 OD2 B:ASP359 2.3 73.5 1.0 O B:HOH524 2.4 71.9 1.0 OD2 B:ASP348 2.4 67.2 1.0 OD2 B:ASP356 2.4 68.3 1.0 O B:GLY283 2.4 67.3 1.0 OD2 B:ASP351 2.5 64.3 1.0 OD1 B:ASP351 2.6 64.0 1.0 CG B:ASP351 2.9 64.4 1.0 CG B:ASP348 3.2 65.3 1.0 CG B:ASP359 3.3 72.0 1.0 CG B:ASP356 3.5 68.1 1.0 CB B:ASP359 3.5 68.8 1.0 C B:GLY283 3.6 70.9 1.0 OD1 B:ASP348 3.7 63.7 1.0 CB B:ASP356 4.1 65.0 1.0 O B:HOH510 4.1 68.1 1.0 N B:PHE285 4.2 64.7 1.0 CB B:ASP348 4.3 65.5 1.0 N B:THR284 4.3 68.3 1.0 CA B:THR284 4.3 70.2 1.0 OD1 B:ASP356 4.4 66.2 1.0 CG B:ARG362 4.4 66.0 1.0 OD1 B:ASP359 4.4 73.3 1.0 CB B:ASP351 4.4 65.9 1.0 N B:ASP348 4.5 64.3 1.0 CA B:GLY283 4.6 76.3 1.0 C B:THR284 4.6 69.1 1.0 CD B:ARG362 4.9 65.3 1.0 O B:GLY346 4.9 68.6 1.0 CA B:PHE285 5.0 65.1 1.0 CA B:ASP359 5.0 69.4 1.0

M.Fellner, M.Fellner. N/A N/A.