Calcium in PDB 8sam: Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp

The structure of Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp, PDB code: 8sam was solved by A.Hernandez Garcia, S.K.Nair, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.01 / 2.15
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.025, 228.659, 84.595, 90, 100.5, 90
R / Rfree (%)	20.3 / 25.1

The binding sites of Calcium atom in the Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp (pdb code 8sam). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp, PDB code: 8sam:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:73.3 occ:1.00 OD2 A:ASP382 2.5 64.8 1.0 O1A A:ATP902 3.1 67.2 1.0 O2G A:ATP902 3.2 83.4 1.0 O3A A:ATP902 3.4 78.0 1.0 CG A:ASP382 3.6 71.2 1.0 PA A:ATP902 3.9 78.1 1.0 O2B A:ATP902 3.9 73.0 1.0 OD1 A:ASN369 4.0 57.0 1.0 CB A:ASP382 4.2 59.0 1.0 PB A:ATP902 4.3 78.9 1.0 PG A:ATP902 4.5 86.7 1.0 OD1 A:ASP382 4.5 70.6 1.0 O3B A:ATP902 4.7 89.6 1.0 O2A A:ATP902 4.9 78.0 1.0 O5' A:ATP902 4.9 74.3 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Class III Lanthipeptide Synthetase Lp-Gs-Thurkc in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca902 b:67.6 occ:1.00 OD2 B:ASP382 2.4 67.5 1.0 O3A B:ATP901 2.8 81.6 1.0 O B:HOH1156 2.9 61.7 1.0 O2G B:ATP901 3.2 81.3 1.0 O1A B:ATP901 3.3 74.0 1.0 CG B:ASP382 3.6 65.2 1.0 PA B:ATP901 3.7 80.1 1.0 O2B B:ATP901 3.8 74.0 1.0 PB B:ATP901 3.9 71.3 1.0 O B:HOH1050 4.0 56.9 1.0 OD1 B:ASN369 4.1 56.2 1.0 O3B B:ATP901 4.2 85.3 1.0 CB B:ASP382 4.2 59.5 1.0 PG B:ATP901 4.3 90.4 1.0 OD1 B:ASP382 4.6 60.5 1.0 O2A B:ATP901 4.6 83.3 1.0 O5' B:ATP901 4.8 75.3 1.0

A.Hernandez Garcia, S.K.Nair. A Protein Kinase Adapted For Lanthipeptide Biosynthesis To Be Published.