Atomistry » Calcium » PDB 8sjc-8szh » 8srk
Atomistry »
  Calcium »
    PDB 8sjc-8szh »
      8srk »

Calcium in PDB 8srk: Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose (pdb code 8srk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose, PDB code: 8srk:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 1 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1702

b:73.9
occ:1.00
 OD1 A:ASN869 2.6 127.0 1.0
OD2 A:ASP872 3.5 130.4 1.0
CG A:ASN869 3.8 127.0 1.0
NH2 A:ARG913 4.1 114.0 1.0
CG A:ASP872 4.5 130.4 1.0
ND2 A:ASN869 4.5 127.0 1.0
CB A:GLN853 4.5 129.7 1.0
CB A:ASN869 4.9 127.0 1.0

Calcium binding site 2 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 2 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1703

b:115.8
occ:1.00
 O A:GLY623 2.6 124.2 1.0
O A:LEU621 2.6 126.9 1.0
C A:GLY623 3.7 124.2 1.0
C A:LEU621 3.8 126.9 1.0
C A:ILE622 4.1 122.7 1.0
O A:ILE622 4.3 122.7 1.0
N A:GLY623 4.3 124.2 1.0
CA A:ILE622 4.4 122.7 1.0
N A:ASP624 4.5 133.0 1.0
CA A:GLY623 4.6 124.2 1.0
CA A:ASP624 4.6 133.0 1.0
N A:ILE622 4.6 122.7 1.0
CB A:GLU1114 4.6 116.5 1.0
CA A:LEU621 4.8 126.9 1.0
O A:TRP620 4.8 117.4 1.0
CG2 A:THR1117 4.9 120.0 1.0
CA A:GLU1114 4.9 116.5 1.0

Calcium binding site 3 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 3 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1702

b:73.9
occ:1.00
 OD1 B:ASN869 2.6 127.0 1.0
OD2 B:ASP872 3.5 130.4 1.0
CG B:ASN869 3.8 127.0 1.0
NH2 B:ARG913 4.1 114.0 1.0
CG B:ASP872 4.5 130.4 1.0
ND2 B:ASN869 4.5 127.0 1.0
CB B:GLN853 4.5 129.7 1.0
CB B:ASN869 4.9 127.0 1.0

Calcium binding site 4 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 4 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1703

b:115.8
occ:1.00
 O B:GLY623 2.6 124.2 1.0
O B:LEU621 2.6 126.9 1.0
C B:GLY623 3.7 124.2 1.0
C B:LEU621 3.8 126.9 1.0
C B:ILE622 4.1 122.7 1.0
O B:ILE622 4.3 122.7 1.0
N B:GLY623 4.3 124.2 1.0
CA B:ILE622 4.4 122.7 1.0
N B:ASP624 4.5 133.0 1.0
CA B:GLY623 4.6 124.2 1.0
CA B:ASP624 4.6 133.0 1.0
N B:ILE622 4.6 122.7 1.0
CB B:GLU1114 4.6 116.5 1.0
CA B:LEU621 4.8 126.9 1.0
O B:TRP620 4.8 117.4 1.0
CG2 B:THR1117 4.9 120.0 1.0
CA B:GLU1114 4.9 116.5 1.0

Calcium binding site 5 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 5 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1702

b:73.9
occ:1.00
 OD1 C:ASN869 2.6 127.0 1.0
OD2 C:ASP872 3.5 130.4 1.0
CG C:ASN869 3.8 127.0 1.0
NH2 C:ARG913 4.1 114.0 1.0
CG C:ASP872 4.5 130.4 1.0
ND2 C:ASN869 4.5 127.0 1.0
CB C:GLN853 4.5 129.7 1.0
CB C:ASN869 4.9 127.0 1.0

Calcium binding site 6 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 6 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1703

b:115.8
occ:1.00
 O C:GLY623 2.6 124.2 1.0
O C:LEU621 2.6 126.9 1.0
C C:GLY623 3.7 124.2 1.0
C C:LEU621 3.8 126.9 1.0
C C:ILE622 4.1 122.7 1.0
O C:ILE622 4.3 122.7 1.0
N C:GLY623 4.3 124.2 1.0
CA C:ILE622 4.4 122.7 1.0
N C:ASP624 4.5 133.0 1.0
CA C:GLY623 4.6 124.2 1.0
CA C:ASP624 4.6 133.0 1.0
N C:ILE622 4.6 122.7 1.0
CB C:GLU1114 4.6 116.5 1.0
CA C:LEU621 4.8 126.9 1.0
O C:TRP620 4.8 117.4 1.0
CG2 C:THR1117 4.9 120.0 1.0
CA C:GLU1114 4.9 116.5 1.0

Calcium binding site 7 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 7 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca6004

b:73.9
occ:1.00
 OD1 D:ASN869 2.6 127.0 1.0
OD2 D:ASP872 3.5 130.4 1.0
CG D:ASN869 3.8 127.0 1.0
NH2 D:ARG913 4.1 114.0 1.0
CG D:ASP872 4.5 130.4 1.0
ND2 D:ASN869 4.5 127.0 1.0
CB D:GLN853 4.5 129.7 1.0
CB D:ASN869 4.9 127.0 1.0

Calcium binding site 8 out of 8 in 8srk

Go back to Calcium Binding Sites List in 8srk
Calcium binding site 8 out of 8 in the Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of TRPM2 Chanzyme (Without NUDT9-H Domain) in the Presence of Ca and Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca6005

b:115.8
occ:1.00
 O D:GLY623 2.6 124.2 1.0
O D:LEU621 2.6 126.9 1.0
C D:GLY623 3.7 124.2 1.0
C D:LEU621 3.8 126.9 1.0
C D:ILE622 4.1 122.7 1.0
O D:ILE622 4.3 122.7 1.0
N D:GLY623 4.3 124.2 1.0
CA D:ILE622 4.4 122.7 1.0
N D:ASP624 4.5 133.0 1.0
CA D:GLY623 4.6 124.2 1.0
CA D:ASP624 4.6 133.0 1.0
N D:ILE622 4.6 122.7 1.0
CB D:GLU1114 4.6 116.5 1.0
CA D:LEU621 4.8 126.9 1.0
O D:TRP620 4.8 117.4 1.0
CG2 D:THR1117 4.9 120.0 1.0
CA D:GLU1114 4.9 116.5 1.0

Reference:

Y.Huang, W.Lu, J.Du. Coupling Enzymatic Activity and Gating in An Ancient Trpm Chanzyme and Its Molecular Evolution To Be Published.
Page generated: Thu Jul 10 07:20:48 2025

Last articles

Mg in 5MMJ
Mg in 5MRA
Mg in 5MTV
Mg in 5MS0
Mg in 5MRU
Mg in 5MQJ
Mg in 5MQW
Mg in 5MQT
Mg in 5MQL
Mg in 5MQ1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy