Calcium in PDB 8vjq: Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera

All present enzymatic activity of Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera:
1.11.1.18;

The structure of Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera also contains other interesting chemical elements:

Bromine	(Br)	2 atoms
Vanadium	(V)	2 atoms

The binding sites of Calcium atom in the Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera (pdb code 8vjq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera, PDB code: 8vjq:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca602 b:52.7 occ:1.00 OD2 A:ASP368 2.2 22.0 1.0 O A:GLN370 2.3 25.9 1.0 O A:PHE361 2.5 26.1 1.0 OD1 A:ASP365 2.6 31.1 1.0 O A:GLN363 2.7 28.6 1.0 CG A:ASP368 3.1 28.5 1.0 OD1 A:ASP368 3.4 33.2 1.0 C A:PHE361 3.5 24.9 1.0 C A:GLN370 3.5 24.9 1.0 C A:GLN363 3.8 26.3 1.0 CG A:ASP365 3.9 30.3 1.0 CA A:ASP371 4.0 23.2 1.0 N A:GLN363 4.2 24.8 1.0 N A:ASP371 4.2 26.2 1.0 C A:GLN362 4.2 25.6 1.0 CA A:PHE361 4.3 25.2 1.0 N A:ASP365 4.3 28.6 1.0 CB A:PHE361 4.3 23.4 1.0 CA A:ASP365 4.3 25.1 1.0 N A:GLN362 4.4 23.9 1.0 CA A:GLN362 4.5 21.5 1.0 OD1 A:ASP371 4.5 32.9 1.0 C A:GLU364 4.5 29.9 1.0 CB A:ASP368 4.5 23.3 1.0 CA A:GLN363 4.6 22.5 1.0 CB A:ASP365 4.7 26.6 1.0 CA A:GLN370 4.7 23.4 1.0 N A:GLN370 4.7 21.4 1.0 O A:GLN362 4.7 26.1 1.0 OD2 A:ASP365 4.8 32.6 1.0 N A:GLU364 4.8 28.0 1.0 N A:VAL372 4.8 21.7 1.0 O A:GLU364 4.9 33.3 1.0 C A:ASP371 4.9 24.5 1.0 CA A:GLU364 4.9 27.6 1.0

Calcium binding site 2 out of 2 in the Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Bromide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca602 b:51.9 occ:1.00 OD2 B:ASP368 2.3 23.8 1.0 O B:GLN370 2.4 26.5 1.0 OD1 B:ASP365 2.4 33.6 1.0 O B:PHE361 2.6 26.6 1.0 O B:GLN363 2.7 24.4 1.0 CG B:ASP368 3.3 28.8 1.0 OD1 B:ASP368 3.5 32.2 1.0 C B:GLN370 3.6 25.5 1.0 C B:PHE361 3.6 22.4 1.0 CG B:ASP365 3.6 32.3 1.0 C B:GLN363 3.8 25.7 1.0 CA B:ASP371 4.1 21.6 1.0 N B:GLN363 4.1 22.8 1.0 CA B:ASP365 4.2 26.0 1.0 N B:ASP371 4.2 26.2 1.0 N B:ASP365 4.3 29.3 1.0 CA B:PHE361 4.3 23.5 1.0 C B:GLN362 4.4 24.4 1.0 CB B:PHE361 4.4 21.9 1.0 OD1 B:ASP371 4.4 29.4 1.0 OD2 B:ASP365 4.4 32.5 1.0 N B:GLN362 4.5 21.1 1.0 CB B:ASP365 4.5 27.3 1.0 C B:GLU364 4.5 30.6 1.0 CA B:GLN362 4.6 20.2 1.0 CA B:GLN363 4.6 19.6 1.0 CB B:ASP368 4.6 23.3 1.0 CA B:GLN370 4.7 22.9 1.0 N B:GLN370 4.7 23.0 1.0 N B:GLU364 4.8 32.3 1.0 O B:GLU364 4.9 33.6 1.0 C B:ASP371 4.9 21.9 1.0 CA B:GLU364 4.9 28.5 1.0 N B:VAL372 4.9 18.6 1.0 O B:GLN362 5.0 26.6 1.0

L.Z.Hessefort, D.R.Williams, K.F.Biegasiewicz. High-Resolution Cryoem Unveils Insights Into the Catalytic Mechanism of A Vanadium-Dependent Bromoperoxidase To Be Published.