Calcium in PDB 8xi5: Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
Enzymatic activity of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
All present enzymatic activity of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5:
3.4.21.90;
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
(pdb code 8xi5). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5, PDB code: 8xi5:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 1 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Ca301
b:113.0
occ:1.00
|
O
|
M:ASP215
|
2.4
|
106.3
|
1.0
|
|
O
|
M:TRP210
|
2.4
|
104.6
|
1.0
|
|
OD1
|
M:ASP213
|
2.4
|
113.7
|
1.0
|
|
OD2
|
M:ASP223
|
2.4
|
115.9
|
1.0
|
|
OD2
|
M:ASP217
|
2.4
|
101.3
|
1.0
|
|
CG
|
M:ASP217
|
3.0
|
100.6
|
1.0
|
|
CG
|
M:ASP213
|
3.2
|
113.7
|
1.0
|
|
OD2
|
M:ASP213
|
3.3
|
112.6
|
1.0
|
|
OD1
|
M:ASP217
|
3.3
|
100.8
|
1.0
|
|
OE2
|
M:GLU224
|
3.4
|
117.0
|
1.0
|
|
C
|
M:TRP210
|
3.4
|
103.3
|
1.0
|
|
C
|
M:ASP215
|
3.5
|
106.3
|
1.0
|
|
CG
|
M:ASP223
|
3.6
|
117.3
|
1.0
|
|
NZ
|
B:LYS156
|
3.8
|
63.5
|
1.0
|
|
CB
|
M:ASP215
|
3.8
|
106.7
|
1.0
|
|
OE1
|
M:GLU224
|
3.9
|
117.7
|
1.0
|
|
CA
|
M:ASP215
|
4.0
|
106.3
|
1.0
|
|
CB
|
M:ASP217
|
4.0
|
100.6
|
1.0
|
|
CD
|
M:GLU224
|
4.0
|
117.0
|
1.0
|
|
N
|
M:ASP215
|
4.1
|
106.2
|
1.0
|
|
N
|
M:ASP217
|
4.2
|
101.4
|
1.0
|
|
CA
|
M:TRP210
|
4.2
|
101.5
|
1.0
|
|
CE
|
B:LYS156
|
4.3
|
60.1
|
1.0
|
|
N
|
M:VAL211
|
4.4
|
111.7
|
1.0
|
|
CB
|
M:TRP210
|
4.4
|
102.6
|
1.0
|
|
CB
|
M:ASP223
|
4.4
|
117.4
|
1.0
|
|
N
|
M:ASP213
|
4.5
|
113.6
|
1.0
|
|
CB
|
M:ASP213
|
4.6
|
113.0
|
1.0
|
|
OD1
|
M:ASP223
|
4.6
|
117.1
|
1.0
|
|
CA
|
M:VAL211
|
4.6
|
110.9
|
1.0
|
|
N
|
M:ALA216
|
4.6
|
95.3
|
1.0
|
|
CA
|
M:ASP217
|
4.8
|
101.2
|
1.0
|
|
N
|
M:CYS212
|
4.8
|
123.2
|
1.0
|
|
C
|
M:VAL211
|
4.9
|
112.1
|
1.0
|
|
CA
|
M:ASP213
|
4.9
|
113.7
|
1.0
|
|
CA
|
M:ALA216
|
5.0
|
95.2
|
1.0
|
|
CD1
|
M:ILE206
|
5.0
|
120.8
|
1.0
|
|
Calcium binding site 2 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 2 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Ca301
b:98.0
occ:1.00
|
O
|
N:ASP215
|
2.4
|
104.5
|
1.0
|
|
OD1
|
N:ASP213
|
2.4
|
105.3
|
1.0
|
|
OD2
|
N:ASP223
|
2.4
|
115.1
|
1.0
|
|
O
|
N:TRP210
|
2.4
|
94.8
|
1.0
|
|
OD2
|
N:ASP217
|
2.4
|
104.0
|
1.0
|
|
CG
|
N:ASP217
|
3.1
|
102.8
|
1.0
|
|
OE1
|
N:GLU224
|
3.3
|
112.0
|
1.0
|
|
OD1
|
N:ASP217
|
3.4
|
102.0
|
1.0
|
|
CG
|
N:ASP213
|
3.4
|
104.5
|
1.0
|
|
C
|
N:ASP215
|
3.5
|
104.6
|
1.0
|
|
CG
|
N:ASP223
|
3.5
|
116.3
|
1.0
|
|
C
|
N:TRP210
|
3.6
|
93.2
|
1.0
|
|
OD2
|
N:ASP213
|
3.8
|
103.8
|
1.0
|
|
OD1
|
N:ASP223
|
4.0
|
115.8
|
1.0
|
|
CG
|
N:GLU224
|
4.1
|
113.8
|
1.0
|
|
CD
|
N:GLU224
|
4.1
|
112.4
|
1.0
|
|
CA
|
N:ASP215
|
4.2
|
104.8
|
1.0
|
|
CB
|
N:ASP215
|
4.2
|
105.0
|
1.0
|
|
N
|
N:ASP217
|
4.2
|
103.4
|
1.0
|
|
N
|
N:ASP215
|
4.2
|
104.8
|
1.0
|
|
NZ
|
E:LYS156
|
4.3
|
50.7
|
1.0
|
|
CB
|
N:ASP217
|
4.3
|
102.8
|
1.0
|
|
N
|
N:ASP213
|
4.4
|
105.5
|
1.0
|
|
CA
|
N:TRP210
|
4.4
|
92.6
|
1.0
|
|
N
|
N:VAL211
|
4.5
|
98.7
|
1.0
|
|
N
|
N:ALA216
|
4.5
|
99.4
|
1.0
|
|
N
|
N:CYS212
|
4.6
|
106.2
|
1.0
|
|
CB
|
N:TRP210
|
4.6
|
92.7
|
1.0
|
|
CA
|
N:VAL211
|
4.6
|
99.4
|
1.0
|
|
CE
|
E:LYS156
|
4.7
|
55.2
|
1.0
|
|
CB
|
N:ASP223
|
4.7
|
116.2
|
1.0
|
|
CB
|
N:ASP213
|
4.7
|
103.8
|
1.0
|
|
CA
|
N:ALA216
|
4.8
|
99.9
|
1.0
|
|
C
|
N:VAL211
|
4.9
|
99.4
|
1.0
|
|
C
|
N:ALA216
|
4.9
|
101.8
|
1.0
|
|
CA
|
N:ASP217
|
4.9
|
103.0
|
1.0
|
|
CA
|
N:ASP213
|
4.9
|
104.6
|
1.0
|
|
Calcium binding site 3 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 3 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca301
b:92.4
occ:1.00
|
O
|
O:TRP210
|
2.4
|
99.8
|
1.0
|
|
O
|
O:ASP215
|
2.4
|
101.9
|
1.0
|
|
OD1
|
O:ASP213
|
2.4
|
105.6
|
1.0
|
|
OE1
|
O:GLU224
|
3.2
|
123.4
|
1.0
|
|
OD2
|
O:ASP223
|
3.3
|
122.7
|
1.0
|
|
CG
|
O:ASP213
|
3.3
|
106.9
|
1.0
|
|
C
|
O:TRP210
|
3.5
|
98.5
|
1.0
|
|
C
|
O:ASP215
|
3.5
|
100.7
|
1.0
|
|
OD2
|
O:ASP213
|
3.5
|
104.7
|
1.0
|
|
OD2
|
O:ASP217
|
3.5
|
116.4
|
1.0
|
|
CG
|
O:ASP217
|
3.5
|
113.9
|
1.0
|
|
CB
|
O:ASP215
|
3.8
|
101.1
|
1.0
|
|
OD1
|
O:ASP217
|
3.8
|
113.8
|
1.0
|
|
CA
|
O:ASP215
|
4.1
|
99.9
|
1.0
|
|
CB
|
O:ASP217
|
4.1
|
111.9
|
1.0
|
|
N
|
O:ASP217
|
4.1
|
112.0
|
1.0
|
|
NZ
|
H:LYS156
|
4.2
|
49.4
|
1.0
|
|
CA
|
O:TRP210
|
4.2
|
95.9
|
1.0
|
|
N
|
O:ASP215
|
4.3
|
99.9
|
1.0
|
|
CG
|
O:ASP223
|
4.4
|
123.9
|
1.0
|
|
CB
|
O:TRP210
|
4.4
|
97.6
|
1.0
|
|
N
|
O:VAL211
|
4.4
|
108.4
|
1.0
|
|
CD
|
O:GLU224
|
4.4
|
123.2
|
1.0
|
|
CD1
|
O:ILE206
|
4.5
|
110.8
|
1.0
|
|
CA
|
O:VAL211
|
4.6
|
108.2
|
1.0
|
|
N
|
O:ALA216
|
4.6
|
105.4
|
1.0
|
|
N
|
O:ASP213
|
4.7
|
107.3
|
1.0
|
|
CE
|
H:LYS156
|
4.7
|
52.8
|
1.0
|
|
CB
|
O:ASP213
|
4.7
|
106.7
|
1.0
|
|
CA
|
O:ASP217
|
4.7
|
112.7
|
1.0
|
|
CB
|
O:ASP223
|
4.9
|
123.9
|
1.0
|
|
N
|
O:CYS212
|
4.9
|
119.0
|
1.0
|
|
CA
|
O:ALA216
|
4.9
|
106.6
|
1.0
|
|
OE2
|
O:GLU224
|
4.9
|
123.6
|
1.0
|
|
Calcium binding site 4 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 4 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca301
b:83.7
occ:1.00
|
OD1
|
P:ASP213
|
2.4
|
102.0
|
1.0
|
|
O
|
P:TRP210
|
2.4
|
85.8
|
1.0
|
|
OD2
|
P:ASP217
|
2.4
|
98.0
|
1.0
|
|
OD2
|
P:ASP223
|
2.5
|
117.9
|
1.0
|
|
OE1
|
P:GLU224
|
2.6
|
117.6
|
1.0
|
|
CG
|
P:ASP217
|
3.2
|
99.4
|
1.0
|
|
O
|
P:ASP215
|
3.2
|
91.8
|
1.0
|
|
CG
|
P:ASP213
|
3.5
|
102.2
|
1.0
|
|
CG
|
P:ASP223
|
3.6
|
116.4
|
1.0
|
|
C
|
P:TRP210
|
3.6
|
88.2
|
1.0
|
|
CB
|
P:ASP215
|
3.8
|
94.1
|
1.0
|
|
C
|
P:ASP215
|
3.8
|
92.0
|
1.0
|
|
OD1
|
P:ASP217
|
3.8
|
99.0
|
1.0
|
|
CD
|
P:GLU224
|
3.8
|
118.4
|
1.0
|
|
OD2
|
P:ASP213
|
4.0
|
99.9
|
1.0
|
|
CB
|
P:ASP223
|
4.1
|
116.6
|
1.0
|
|
CB
|
P:ASP217
|
4.1
|
99.4
|
1.0
|
|
N
|
P:ASP215
|
4.1
|
95.4
|
1.0
|
|
CA
|
P:ASP215
|
4.1
|
93.8
|
1.0
|
|
CA
|
P:VAL211
|
4.3
|
101.3
|
1.0
|
|
N
|
P:ASP217
|
4.4
|
97.0
|
1.0
|
|
N
|
P:VAL211
|
4.4
|
100.5
|
1.0
|
|
N
|
P:ASP213
|
4.5
|
104.3
|
1.0
|
|
N
|
P:CYS212
|
4.5
|
111.8
|
1.0
|
|
CG
|
P:GLU224
|
4.6
|
119.3
|
1.0
|
|
OD1
|
P:ASP223
|
4.6
|
116.1
|
1.0
|
|
CA
|
P:TRP210
|
4.7
|
88.0
|
1.0
|
|
C
|
P:VAL211
|
4.7
|
100.9
|
1.0
|
|
NZ
|
K:LYS156
|
4.7
|
48.5
|
1.0
|
|
N
|
P:ALA216
|
4.7
|
91.3
|
1.0
|
|
CB
|
P:ASP213
|
4.8
|
102.4
|
1.0
|
|
OE2
|
P:GLU224
|
4.8
|
117.1
|
1.0
|
|
CB
|
P:TRP210
|
4.8
|
85.7
|
1.0
|
|
CA
|
P:ASP217
|
4.9
|
98.7
|
1.0
|
|
CD1
|
P:ILE206
|
4.9
|
109.5
|
1.0
|
|
CA
|
P:ASP213
|
5.0
|
103.6
|
1.0
|
|
Calcium binding site 5 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 5 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Ca201
b:138.8
occ:1.00
|
OD1
|
Q:ASP135
|
2.4
|
130.7
|
1.0
|
|
OD2
|
Q:ASP145
|
2.4
|
154.1
|
1.0
|
|
OD2
|
Q:ASP135
|
2.4
|
130.2
|
1.0
|
|
OD2
|
Q:ASP139
|
2.6
|
141.5
|
1.0
|
|
O
|
Q:TRP132
|
2.7
|
126.5
|
1.0
|
|
CG
|
Q:ASP135
|
2.8
|
129.9
|
1.0
|
|
O
|
Q:GLU137
|
3.0
|
122.4
|
1.0
|
|
CG
|
Q:ASP145
|
3.1
|
153.8
|
1.0
|
|
OD1
|
Q:ASP145
|
3.3
|
154.4
|
1.0
|
|
OE2
|
Q:GLU146
|
3.3
|
149.1
|
1.0
|
|
C
|
Q:TRP132
|
3.5
|
127.5
|
1.0
|
|
CG
|
Q:ASP139
|
3.7
|
141.3
|
1.0
|
|
CB
|
Q:TRP132
|
4.1
|
125.0
|
1.0
|
|
CB
|
Q:ASP139
|
4.2
|
142.3
|
1.0
|
|
NZ
|
E:LYS206
|
4.2
|
91.4
|
1.0
|
|
C
|
Q:GLU137
|
4.3
|
121.5
|
1.0
|
|
CB
|
Q:ASP135
|
4.3
|
129.2
|
1.0
|
|
CA
|
Q:TRP132
|
4.3
|
126.2
|
1.0
|
|
N
|
Q:ARG133
|
4.3
|
159.6
|
1.0
|
|
CB
|
Q:ASP145
|
4.4
|
153.6
|
1.0
|
|
CA
|
Q:ARG133
|
4.5
|
160.3
|
1.0
|
|
CD
|
Q:GLU146
|
4.5
|
150.1
|
1.0
|
|
N
|
Q:ASP139
|
4.5
|
142.4
|
1.0
|
|
OD1
|
Q:ASP139
|
4.7
|
140.9
|
1.0
|
|
N
|
Q:ASP135
|
4.7
|
132.2
|
1.0
|
|
O
|
Q:ASP145
|
4.7
|
153.5
|
1.0
|
|
C
|
Q:ASN138
|
5.0
|
140.7
|
1.0
|
|
N
|
Q:GLU137
|
5.0
|
119.3
|
1.0
|
|
CG
|
Q:GLU137
|
5.0
|
118.5
|
1.0
|
|
OE1
|
Q:GLU146
|
5.0
|
151.2
|
1.0
|
|
Calcium binding site 6 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 6 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Ca201
b:131.9
occ:1.00
|
OD2
|
R:ASP139
|
2.4
|
157.2
|
1.0
|
|
OD2
|
R:ASP145
|
2.4
|
162.8
|
1.0
|
|
OD1
|
R:ASP135
|
2.4
|
143.5
|
1.0
|
|
O
|
R:TRP132
|
3.1
|
133.1
|
1.0
|
|
O
|
R:GLU137
|
3.2
|
151.3
|
1.0
|
|
CG
|
R:ASP145
|
3.2
|
162.5
|
1.0
|
|
CG
|
R:ASP135
|
3.2
|
143.4
|
1.0
|
|
OD2
|
R:ASP135
|
3.3
|
142.9
|
1.0
|
|
OE2
|
R:GLU146
|
3.4
|
158.4
|
1.0
|
|
OD1
|
R:ASP145
|
3.5
|
161.9
|
1.0
|
|
CG
|
R:ASP139
|
3.5
|
157.0
|
1.0
|
|
C
|
R:TRP132
|
3.6
|
133.0
|
1.0
|
|
NZ
|
B:LYS206
|
3.7
|
91.4
|
1.0
|
|
CB
|
R:ASP139
|
4.1
|
157.7
|
1.0
|
|
N
|
R:ARG133
|
4.1
|
146.5
|
1.0
|
|
CA
|
R:ARG133
|
4.2
|
146.6
|
1.0
|
|
CB
|
R:TRP132
|
4.3
|
131.4
|
1.0
|
|
N
|
R:CYS134
|
4.3
|
154.1
|
1.0
|
|
C
|
R:GLU137
|
4.4
|
150.8
|
1.0
|
|
CA
|
R:TRP132
|
4.4
|
131.9
|
1.0
|
|
CB
|
R:ASP145
|
4.4
|
162.1
|
1.0
|
|
N
|
R:ASP135
|
4.4
|
145.4
|
1.0
|
|
OD1
|
R:ASP139
|
4.5
|
157.1
|
1.0
|
|
C
|
R:ARG133
|
4.5
|
147.0
|
1.0
|
|
CD
|
R:GLU146
|
4.6
|
158.4
|
1.0
|
|
N
|
R:ASP139
|
4.6
|
158.4
|
1.0
|
|
CB
|
R:ASP135
|
4.6
|
143.3
|
1.0
|
|
CE
|
B:LYS206
|
4.7
|
92.1
|
1.0
|
|
O
|
R:ASP145
|
4.8
|
161.4
|
1.0
|
|
CG
|
R:GLU137
|
4.8
|
149.2
|
1.0
|
|
Calcium binding site 7 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 7 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Ca201
b:156.3
occ:1.00
|
OD2
|
S:ASP139
|
2.4
|
145.2
|
1.0
|
|
OD1
|
S:ASP135
|
2.5
|
134.6
|
1.0
|
|
OD2
|
S:ASP145
|
2.5
|
157.4
|
1.0
|
|
O
|
S:TRP132
|
2.5
|
134.2
|
1.0
|
|
OD2
|
S:ASP135
|
2.5
|
135.1
|
1.0
|
|
CG
|
S:ASP135
|
2.8
|
134.6
|
1.0
|
|
CG
|
S:ASP139
|
3.2
|
145.4
|
1.0
|
|
O
|
S:GLU137
|
3.3
|
133.8
|
1.0
|
|
CG
|
S:ASP145
|
3.3
|
156.9
|
1.0
|
|
C
|
S:TRP132
|
3.5
|
134.2
|
1.0
|
|
OD1
|
S:ASP145
|
3.5
|
157.2
|
1.0
|
|
OE2
|
S:GLU146
|
3.5
|
153.9
|
1.0
|
|
CB
|
S:ASP139
|
3.7
|
145.4
|
1.0
|
|
OD1
|
S:ASP139
|
4.0
|
145.2
|
1.0
|
|
CB
|
S:TRP132
|
4.2
|
133.2
|
1.0
|
|
NZ
|
H:LYS206
|
4.2
|
91.4
|
1.0
|
|
N
|
S:ARG133
|
4.3
|
144.3
|
1.0
|
|
CB
|
S:ASP135
|
4.3
|
133.6
|
1.0
|
|
CA
|
S:TRP132
|
4.3
|
133.4
|
1.0
|
|
CA
|
S:ARG133
|
4.4
|
144.0
|
1.0
|
|
C
|
S:GLU137
|
4.4
|
133.7
|
1.0
|
|
N
|
S:ASP139
|
4.5
|
146.2
|
1.0
|
|
CB
|
S:ASP145
|
4.7
|
156.8
|
1.0
|
|
CD
|
S:GLU146
|
4.7
|
154.2
|
1.0
|
|
N
|
S:ASP135
|
4.7
|
135.4
|
1.0
|
|
CA
|
S:ASP139
|
4.8
|
145.7
|
1.0
|
|
C
|
S:ASN138
|
4.9
|
146.1
|
1.0
|
|
C
|
S:ARG133
|
5.0
|
144.9
|
1.0
|
|
N
|
S:CYS134
|
5.0
|
147.8
|
1.0
|
|
CG
|
S:GLU137
|
5.0
|
132.1
|
1.0
|
|
Calcium binding site 8 out
of 8 in 8xi5
Go back to
Calcium Binding Sites List in 8xi5
Calcium binding site 8 out
of 8 in the Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Eastern Equine Encephalitis Vlp in Complex with the Receptor Vldlr LA3-5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Ca201
b:108.7
occ:1.00
|
O
|
T:TRP132
|
2.4
|
116.5
|
1.0
|
|
OD2
|
T:ASP139
|
2.5
|
123.0
|
1.0
|
|
OD2
|
T:ASP135
|
2.5
|
114.0
|
1.0
|
|
OD1
|
T:ASP135
|
2.5
|
115.2
|
1.0
|
|
OD2
|
T:ASP145
|
2.7
|
129.2
|
1.0
|
|
CG
|
T:ASP135
|
2.8
|
114.3
|
1.0
|
|
OE2
|
T:GLU146
|
3.2
|
124.8
|
1.0
|
|
C
|
T:TRP132
|
3.2
|
116.6
|
1.0
|
|
CG
|
T:ASP145
|
3.6
|
128.9
|
1.0
|
|
CB
|
T:TRP132
|
3.6
|
115.6
|
1.0
|
|
CG
|
T:ASP139
|
3.6
|
123.0
|
1.0
|
|
CA
|
T:TRP132
|
3.9
|
115.9
|
1.0
|
|
O
|
T:ASP145
|
4.0
|
126.7
|
1.0
|
|
NZ
|
K:LYS206
|
4.1
|
91.4
|
1.0
|
|
N
|
T:ARG133
|
4.1
|
132.2
|
1.0
|
|
CD
|
T:GLU146
|
4.2
|
124.0
|
1.0
|
|
O
|
T:GLU137
|
4.2
|
112.6
|
1.0
|
|
CB
|
T:ASP135
|
4.2
|
113.8
|
1.0
|
|
OD1
|
T:ASP139
|
4.2
|
122.8
|
1.0
|
|
CB
|
T:ASP145
|
4.2
|
127.8
|
1.0
|
|
N
|
T:ASP135
|
4.3
|
116.2
|
1.0
|
|
OD1
|
T:ASP145
|
4.3
|
129.2
|
1.0
|
|
OE1
|
T:GLU146
|
4.4
|
123.7
|
1.0
|
|
CA
|
T:ARG133
|
4.4
|
133.4
|
1.0
|
|
N
|
T:CYS134
|
4.5
|
132.7
|
1.0
|
|
C
|
T:ASP145
|
4.7
|
128.2
|
1.0
|
|
C
|
T:ARG133
|
4.7
|
133.5
|
1.0
|
|
CB
|
T:ASP139
|
4.8
|
123.7
|
1.0
|
|
CA
|
T:ASP135
|
4.9
|
115.0
|
1.0
|
|
CG
|
T:TRP132
|
4.9
|
116.0
|
1.0
|
|
Reference:
D.Cao,
B.Ma,
Z.Cao,
X.Xu,
X.Zhang,
Y.Xiang.
The Receptor Vldlr Binds Eastern Equine Encephalitis Virus Through Multiple Distinct Modes. Nat Commun V. 15 6866 2024.
ISSN: ESSN 2041-1723
PubMed: 39127734
DOI: 10.1038/S41467-024-51293-X
Page generated: Thu Jul 10 08:21:41 2025
|
