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Calcium in PDB 8xmk: Local Refinement of SRCR5-9 Domains

Calcium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Calcium atom in the Local Refinement of SRCR5-9 Domains (pdb code 8xmk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 17 binding sites of Calcium where determined in the Local Refinement of SRCR5-9 Domains, PDB code: 8xmk:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 17 in 8xmk

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Calcium binding site 1 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1103

b:24.0
occ:1.00
OD1 D:ASP955 2.3 24.7 1.0
OE1 D:GLU1022 2.5 20.6 1.0
OD1 D:ASP956 2.6 20.1 1.0
CG D:ASP955 3.2 19.8 1.0
OD2 D:ASP955 3.5 20.9 1.0
CD D:GLU1022 3.6 22.2 1.0
CG D:ASP956 3.8 21.0 1.0
N D:ASP956 4.1 18.9 1.0
CG D:GLU1022 4.2 13.6 1.0
CB D:GLU1022 4.2 11.7 1.0
CA D:ASP956 4.3 14.8 1.0
C D:ASP955 4.3 16.1 1.0
CE F:LYS811 4.5 44.4 1.0
CB D:ASP955 4.5 15.5 1.0
OD2 D:ASP956 4.6 24.4 1.0
O D:ASP955 4.6 22.6 1.0
CB D:ASP956 4.7 16.6 1.0
OE2 D:GLU1022 4.7 24.9 1.0
SG D:CYS954 4.8 22.7 1.0
CA D:ASP955 4.9 11.1 1.0
NZ F:LYS811 5.0 50.3 1.0

Calcium binding site 2 out of 17 in 8xmk

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Calcium binding site 2 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1104

b:18.3
occ:1.00
OD2 D:ASP616 2.2 24.5 1.0
O D:PHE650 2.4 27.6 1.0
OD2 D:ASP613 2.4 36.6 1.0
O D:HIS611 2.5 30.4 1.0
CG D:ASP616 3.0 23.6 1.0
OD1 D:ASP616 3.1 28.7 1.0
CG D:ASP613 3.4 30.9 1.0
N D:ASP613 3.6 28.9 1.0
C D:PHE650 3.6 16.6 1.0
CB D:ASP613 3.7 30.0 1.0
C D:HIS611 3.7 31.2 1.0
CA D:ASP613 4.3 31.3 1.0
CA D:HIS651 4.3 13.8 1.0
N D:HIS651 4.4 11.3 1.0
CB D:ASP616 4.4 19.8 1.0
CA D:TRP612 4.4 27.9 1.0
C D:TRP612 4.5 28.3 1.0
N D:TRP612 4.5 28.2 1.0
OD1 D:ASP613 4.5 29.0 1.0
CA D:PHE650 4.6 6.0 1.0
N D:CYS652 4.7 18.8 1.0
CB D:HIS611 4.7 34.8 1.0
CA D:HIS611 4.8 34.6 1.0
N D:PHE650 4.8 6.8 1.0
CB D:PHE650 4.9 8.9 1.0
ND1 D:HIS651 4.9 16.5 1.0
C D:HIS651 5.0 17.2 1.0

Calcium binding site 3 out of 17 in 8xmk

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Calcium binding site 3 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1105

b:21.8
occ:1.00
OD2 D:ASP962 2.3 26.8 1.0
O D:SER957 2.4 20.1 1.0
O D:VAL996 2.4 37.4 1.0
OD1 D:ASP959 2.6 30.1 1.0
CG D:ASP962 3.1 26.8 1.0
OD1 D:ASP962 3.2 33.6 1.0
CG D:ASP959 3.3 28.8 1.0
OD2 D:ASP959 3.6 30.9 1.0
C D:SER957 3.6 19.2 1.0
C D:VAL996 3.6 33.7 1.0
N D:ASP959 3.9 21.5 1.0
OG D:SER957 3.9 23.8 1.0
CA D:LYS997 4.2 40.3 1.0
N D:CYS998 4.3 41.5 1.0
CB D:SER957 4.3 19.9 1.0
N D:LYS997 4.4 38.7 1.0
CB D:ASP959 4.4 21.2 1.0
CB D:ASP962 4.4 22.5 1.0
CA D:TRP958 4.5 15.7 1.0
N D:TRP958 4.5 17.7 1.0
CG2 D:VAL996 4.6 28.6 1.0
CA D:SER957 4.6 18.5 1.0
CA D:ASP959 4.7 20.2 1.0
C D:TRP958 4.7 20.7 1.0
C D:LYS997 4.7 43.7 1.0
CA D:VAL996 4.8 32.9 1.0
N D:VAL996 4.9 29.3 1.0
N D:ASP962 5.0 33.4 1.0

Calcium binding site 4 out of 17 in 8xmk

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Calcium binding site 4 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1106

b:54.0
occ:1.00
OE2 D:GLU812 2.3 50.5 1.0
OD1 D:ASP746 2.3 55.6 1.0
OD2 D:ASP745 2.5 53.3 1.0
CD D:GLU812 3.4 54.7 1.0
CG D:ASP746 3.5 55.6 1.0
CG D:ASP745 3.6 53.0 1.0
CA D:ASP746 4.0 53.0 1.0
CG D:GLU812 4.1 53.4 1.0
OD1 D:ASP745 4.2 58.3 1.0
N D:ASP746 4.3 55.2 1.0
OE1 D:GLU812 4.3 55.0 1.0
O D:ASP745 4.3 45.8 1.0
CB D:ASP746 4.3 53.0 1.0
C D:ASP745 4.4 49.0 1.0
OD2 D:ASP746 4.4 58.1 1.0
CB D:ASP745 4.8 48.0 1.0
O D:CYS744 4.8 55.1 1.0

Calcium binding site 5 out of 17 in 8xmk

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Calcium binding site 5 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1107

b:57.7
occ:1.00
OD2 D:ASP752 2.3 57.2 1.0
O D:MET786 2.4 61.5 1.0
O D:SER747 2.4 57.1 1.0
CG D:ASP752 3.1 57.9 1.0
OD1 D:ASP752 3.3 58.0 1.0
C D:MET786 3.5 63.4 1.0
C D:SER747 3.5 57.5 1.0
CA D:LYS787 3.7 68.7 1.0
CB D:SER747 4.0 52.2 1.0
N D:LYS787 4.1 69.1 1.0
N D:ASP749 4.1 55.3 1.0
CB D:ASP749 4.1 56.8 1.0
OG D:SER747 4.2 54.5 1.0
CA D:SER747 4.3 53.2 1.0
CG D:LYS787 4.4 68.4 1.0
C D:LYS787 4.5 69.0 1.0
N D:TRP748 4.5 54.4 1.0
CB D:ASP752 4.6 55.4 1.0
OG D:SER751 4.6 53.9 1.0
N D:CYS788 4.6 64.1 1.0
CB D:LYS787 4.6 69.1 1.0
CA D:TRP748 4.7 49.5 1.0
CA D:ASP749 4.8 55.4 1.0
CA D:MET786 4.8 61.7 1.0
C D:TRP748 4.9 53.3 1.0

Calcium binding site 6 out of 17 in 8xmk

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Calcium binding site 6 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1108

b:66.5
occ:1.00
OD2 D:ASP784 2.3 60.2 1.0
OD2 D:ASP746 2.4 58.1 1.0
OD1 D:ASN807 2.4 60.5 1.0
OE2 D:GLU785 2.4 59.5 1.0
OD1 D:ASP784 2.8 61.7 1.0
CG D:ASP784 2.9 61.6 1.0
NZ E:LYS977 2.9 75.1 1.0
CG D:ASP746 3.4 55.6 1.0
SG D:CYS808 3.5 67.5 1.0
CG D:ASN807 3.5 60.4 1.0
CD D:GLU785 3.6 60.0 1.0
CB D:ASP746 3.6 53.0 1.0
SG D:CYS744 3.8 61.6 1.0
CE E:LYS977 3.8 77.4 1.0
ND2 D:ASN807 4.0 59.2 1.0
CG D:GLU785 4.2 60.3 1.0
O D:ASN807 4.3 57.0 1.0
CB D:ASP784 4.3 60.7 1.0
OD1 D:ASP746 4.5 55.6 1.0
OE1 D:GLU785 4.6 60.2 1.0
CB D:ASN807 4.8 60.4 1.0
CB D:CYS744 4.9 52.6 1.0

Calcium binding site 7 out of 17 in 8xmk

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Calcium binding site 7 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1103

b:29.6
occ:1.00
O E:PHE650 2.3 30.3 1.0
OD2 E:ASP616 2.4 37.2 1.0
O E:HIS611 2.4 42.4 1.0
CG E:ASP616 3.1 33.5 1.0
OD1 E:ASP616 3.2 33.3 1.0
C E:PHE650 3.6 10.2 1.0
C E:HIS611 3.6 39.6 1.0
N E:ASP613 3.7 43.1 1.0
CB E:ASP613 3.8 43.1 1.0
OD2 E:ASP613 3.8 53.0 1.0
CG E:ASP613 4.1 51.1 1.0
CA E:HIS651 4.3 12.6 1.0
CB E:HIS611 4.4 38.4 1.0
N E:HIS651 4.4 1.5 1.0
CA E:ASP613 4.4 42.5 1.0
CA E:HIS611 4.5 40.0 1.0
N E:TRP612 4.5 37.7 1.0
CA E:PHE650 4.6 8.5 1.0
CA E:TRP612 4.6 39.4 1.0
CB E:ASP616 4.6 32.0 1.0
N E:PHE650 4.6 7.5 1.0
C E:TRP612 4.6 42.0 1.0
N E:CYS652 4.8 36.2 1.0
ND1 E:HIS651 4.8 22.4 1.0
CB E:PHE650 4.9 15.1 1.0
C E:HIS651 5.0 27.0 1.0

Calcium binding site 8 out of 17 in 8xmk

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Calcium binding site 8 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1104

b:37.7
occ:1.00
OD1 E:ASP746 2.3 40.4 1.0
OE1 E:GLU812 2.4 39.3 1.0
OD1 E:ASP745 2.5 42.6 1.0
CG E:ASP745 3.4 35.8 1.0
CD E:GLU812 3.5 41.5 1.0
CG E:ASP746 3.5 40.7 1.0
OD2 E:ASP745 3.8 39.8 1.0
N E:ASP746 4.0 35.5 1.0
CB E:GLU812 4.0 39.9 1.0
C E:ASP745 4.1 32.1 1.0
NZ F:LYS1021 4.2 37.7 1.0
OE2 F:GLU981 4.2 44.4 1.0
CA E:ASP746 4.2 35.1 1.0
CG E:GLU812 4.3 37.6 1.0
OE2 E:GLU812 4.3 49.1 1.0
O E:ASP745 4.3 39.2 1.0
OD2 E:ASP746 4.3 36.3 1.0
SG E:CYS744 4.4 56.2 1.0
CB E:ASP746 4.5 33.7 1.0
CB E:ASP745 4.6 28.7 1.0
CE F:LYS1021 4.7 28.9 1.0
CA E:ASP745 4.7 23.1 1.0
N E:ASP745 4.8 34.5 1.0
CD F:GLU981 4.9 45.2 1.0

Calcium binding site 9 out of 17 in 8xmk

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Calcium binding site 9 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1105

b:49.8
occ:1.00
OD1 E:ASP784 2.3 47.7 1.0
OD1 E:ASN807 2.3 44.5 1.0
OE2 E:GLU785 2.4 47.1 1.0
OD2 E:ASP746 2.5 36.3 1.0
CG E:ASN807 3.2 42.6 1.0
CG E:ASP784 3.3 44.4 1.0
ND2 E:ASN807 3.4 45.8 1.0
CG E:ASP746 3.5 40.7 1.0
OD2 E:ASP784 3.5 42.9 1.0
CD E:GLU785 3.5 43.4 1.0
CB E:ASP746 3.8 33.7 1.0
CG E:GLU785 4.1 41.2 1.0
NZ F:LYS1021 4.1 37.7 1.0
CD F:LYS1021 4.3 26.3 1.0
SG E:CYS808 4.4 62.1 1.0
OE1 E:GLU785 4.6 44.7 1.0
OD1 E:ASP746 4.6 40.4 1.0
CB E:ASP784 4.6 42.7 1.0
CB E:ASN807 4.6 41.6 1.0
CE F:LYS1021 4.8 28.9 1.0
N E:ASN807 4.8 46.6 1.0
CE1 E:HIS801 4.9 45.8 1.0

Calcium binding site 10 out of 17 in 8xmk

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Calcium binding site 10 out of 17 in the Local Refinement of SRCR5-9 Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Local Refinement of SRCR5-9 Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1106

b:31.4
occ:1.00
OD1 E:ASP749 2.2 36.3 1.0
O E:MET786 2.2 41.2 1.0
OD2 E:ASP752 2.5 44.9 1.0
O E:SER747 2.6 34.1 1.0
OD1 E:ASP752 2.9 44.0 1.0
CG E:ASP752 3.1 39.1 1.0
CG E:ASP749 3.3 36.0 1.0
C E:MET786 3.3 43.1 1.0
C E:SER747 3.8 36.5 1.0
OD2 E:ASP749 3.8 35.0 1.0
CA E:LYS787 3.8 51.4 1.0
N E:LYS787 4.0 47.0 1.0
N E:ASP749 4.0 32.0 1.0
N E:CYS788 4.1 52.7 1.0
OG E:SER747 4.3 45.6 1.0
C E:LYS787 4.4 53.8 1.0
CA E:MET786 4.4 37.7 1.0
CB E:MET786 4.5 36.3 1.0
CB E:ASP749 4.5 31.7 1.0
CB E:SER747 4.5 36.9 1.0
CB E:ASP752 4.5 32.3 1.0
CA E:TRP748 4.6 22.8 1.0
N E:TRP748 4.6 29.9 1.0
CA E:SER747 4.7 37.8 1.0
CD E:LYS787 4.8 55.3 1.0
O E:CYS788 4.8 56.2 1.0
CA E:ASP749 4.8 27.2 1.0
C E:TRP748 4.8 30.9 1.0
N E:MET786 4.9 37.8 1.0
N E:ASP752 4.9 33.0 1.0

Reference:

H.Xu, X.D.Su. Local Refinement of SRCR5-9 Domains To Be Published.
Page generated: Sat Feb 8 16:11:43 2025

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