Calcium in PDB 8yvm: Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab

All present enzymatic activity of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab:
3.2.1.18;

The binding sites of Calcium atom in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab (pdb code 8yvm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab, PDB code: 8yvm:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:37.7 occ:1.00 O A:GLY297 2.3 40.2 1.0 O A:HIS347 2.4 43.2 1.0 O A:ASP293 2.4 38.0 1.0 OD2 A:ASP324 2.4 36.4 1.0 O A:GLY345 3.2 45.5 1.0 CA A:GLY345 3.4 45.5 1.0 C A:GLY345 3.4 45.5 1.0 C A:GLY297 3.6 40.2 1.0 C A:HIS347 3.6 43.2 1.0 C A:ASP293 3.6 38.0 1.0 CG A:ASP324 3.6 36.4 1.0 N A:HIS347 4.2 43.2 1.0 O A:GLU344 4.3 48.6 1.0 N A:GLY346 4.3 44.1 1.0 CA A:SER298 4.3 37.8 1.0 CA A:GLY348 4.3 34.6 1.0 N A:SER298 4.4 37.8 1.0 CA A:ASN294 4.4 40.0 1.0 N A:GLY297 4.4 40.2 1.0 N A:GLY348 4.5 34.6 1.0 N A:ASN294 4.5 40.0 1.0 CB A:ASP324 4.5 36.4 1.0 OD1 A:ASP324 4.5 36.4 1.0 CA A:GLY297 4.5 40.2 1.0 CA A:HIS347 4.6 43.2 1.0 C A:GLY346 4.6 44.1 1.0 N A:GLY345 4.6 45.5 1.0 CA A:ASP293 4.6 38.0 1.0 CB A:ASP293 4.7 38.0 1.0 C A:ASN294 4.7 40.0 1.0 O A:PRO326 4.9 40.2 1.0 N A:TRP295 4.9 44.2 1.0 C A:GLU344 4.9 48.6 1.0 N A:ASP293 5.0 38.0 1.0

Calcium binding site 2 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:38.2 occ:1.00 O B:GLY297 2.1 37.8 1.0 O B:ASP293 2.4 37.1 1.0 OD2 B:ASP324 2.5 35.2 1.0 O B:GLY345 2.9 44.2 1.0 C B:GLY345 3.4 44.2 1.0 C B:GLY297 3.4 37.8 1.0 CA B:GLY345 3.6 44.2 1.0 C B:ASP293 3.7 37.1 1.0 CG B:ASP324 3.7 35.2 1.0 N B:GLY348 3.7 34.3 1.0 CA B:GLY348 4.0 34.3 1.0 CA B:ASN294 4.1 39.5 1.0 N B:HIS347 4.1 42.3 1.0 N B:GLY346 4.3 43.5 1.0 N B:SER298 4.3 36.3 1.0 C B:HIS347 4.3 42.3 1.0 CA B:GLY297 4.3 37.8 1.0 CA B:SER298 4.3 36.3 1.0 N B:GLY297 4.4 37.8 1.0 N B:ASN294 4.4 39.5 1.0 CB B:ASP324 4.4 35.2 1.0 C B:GLY346 4.5 43.5 1.0 O B:GLU344 4.5 47.6 1.0 C B:ASN294 4.5 39.5 1.0 OD1 B:ASP324 4.7 35.2 1.0 CA B:ASP293 4.7 37.1 1.0 CA B:HIS347 4.7 42.3 1.0 CB B:ASP293 4.7 37.1 1.0 N B:GLY345 4.8 44.2 1.0 CA B:GLY346 4.9 43.5 1.0 O B:PRO326 4.9 39.1 1.0 O B:GLY346 4.9 43.5 1.0 O B:ASN294 4.9 39.5 1.0 N B:TRP295 5.0 43.4 1.0 N B:ASP293 5.0 37.1 1.0

Calcium binding site 3 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca503 b:38.1 occ:1.00 O C:HIS347 2.3 42.4 1.0 O C:GLY297 2.3 38.2 1.0 OD2 C:ASP324 2.3 35.3 1.0 O C:ASP293 2.4 37.6 1.0 O C:GLY345 3.3 44.7 1.0 C C:GLY297 3.4 38.2 1.0 CA C:GLY345 3.4 44.7 1.0 C C:HIS347 3.5 42.4 1.0 C C:GLY345 3.6 44.7 1.0 CG C:ASP324 3.6 35.3 1.0 C C:ASP293 3.7 37.6 1.0 CA C:SER298 4.1 36.5 1.0 N C:HIS347 4.1 42.4 1.0 N C:SER298 4.1 36.5 1.0 O C:GLU344 4.2 48.0 1.0 CA C:GLY348 4.2 34.4 1.0 N C:GLY348 4.4 34.4 1.0 N C:GLY297 4.4 38.2 1.0 CA C:ASN294 4.4 40.0 1.0 CB C:ASP324 4.4 35.3 1.0 OD1 C:ASP324 4.4 35.3 1.0 N C:ASN294 4.5 40.0 1.0 CA C:HIS347 4.5 42.4 1.0 CA C:GLY297 4.5 38.2 1.0 N C:GLY346 4.6 43.7 1.0 N C:GLY345 4.6 44.7 1.0 CA C:ASP293 4.6 37.6 1.0 CB C:ASP293 4.7 37.6 1.0 C C:ASN294 4.8 40.0 1.0 CB C:SER298 4.8 36.5 1.0 C C:GLU344 4.8 48.0 1.0 O C:PRO326 4.9 39.4 1.0 N C:ASP293 4.9 37.6 1.0 N C:TRP295 4.9 44.0 1.0

Calcium binding site 4 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F34 Fab within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca503 b:37.3 occ:1.00 O D:HIS347 2.1 43.0 1.0 OD2 D:ASP324 2.4 35.9 1.0 O D:ASP293 2.5 38.0 1.0 C D:HIS347 3.4 43.0 1.0 O D:GLY345 3.5 45.3 1.0 CG D:ASP324 3.7 35.9 1.0 C D:ASP293 3.7 38.0 1.0 CA D:GLY345 3.7 45.3 1.0 C D:GLY345 3.8 45.3 1.0 C D:GLY297 4.0 40.0 1.0 O D:GLY297 4.1 40.0 1.0 CA D:GLY348 4.2 34.3 1.0 N D:SER298 4.2 37.5 1.0 O D:TRP295 4.2 44.3 1.0 N D:GLY348 4.2 34.3 1.0 N D:HIS347 4.2 43.0 1.0 CA D:SER298 4.3 37.5 1.0 CA D:HIS347 4.4 43.0 1.0 CA D:ASN294 4.4 40.0 1.0 CB D:ASP324 4.5 35.9 1.0 OD1 D:ASP324 4.5 35.9 1.0 N D:ASN294 4.5 40.0 1.0 N D:GLY297 4.6 40.0 1.0 CA D:GLY297 4.6 40.0 1.0 N D:GLY346 4.7 43.9 1.0 O D:GLU344 4.7 47.8 1.0 CA D:ASP293 4.7 38.0 1.0 CB D:ASP293 4.7 38.0 1.0 C D:ASN294 4.8 40.0 1.0 C D:GLY346 4.8 43.9 1.0 N D:ASP293 4.9 38.0 1.0 O D:PRO326 4.9 39.7 1.0 N D:GLY345 5.0 45.3 1.0

X.Wang, J.Ge, X.Li. Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav-F34 Fab To Be Published.