Calcium in PDB 8yw0: Semliki Forest Virus Viron
Calcium Binding Sites:
The binding sites of Calcium atom in the Semliki Forest Virus Viron
(pdb code 8yw0). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the
Semliki Forest Virus Viron, PDB code: 8yw0:
Jump to Calcium binding site number:
1;
2;
3;
Calcium binding site 1 out
of 3 in 8yw0
Go back to
Calcium Binding Sites List in 8yw0
Calcium binding site 1 out
of 3 in the Semliki Forest Virus Viron
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Semliki Forest Virus Viron within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca301
b:191.5
occ:1.00
|
O
|
E:TRP210
|
2.4
|
175.7
|
1.0
|
|
OD2
|
E:ASP223
|
2.4
|
197.0
|
1.0
|
|
O
|
E:ASP215
|
2.4
|
191.0
|
1.0
|
|
OE2
|
E:GLU224
|
2.4
|
197.5
|
1.0
|
|
OD1
|
E:ASP213
|
2.4
|
190.0
|
1.0
|
|
OD2
|
E:ASP217
|
2.9
|
187.8
|
1.0
|
|
CG
|
E:ASP223
|
3.1
|
197.0
|
1.0
|
|
CG
|
E:ASP213
|
3.3
|
190.0
|
1.0
|
|
CB
|
E:ASP223
|
3.4
|
197.0
|
1.0
|
|
CD
|
E:GLU224
|
3.5
|
197.5
|
1.0
|
|
C
|
E:ASP215
|
3.6
|
191.0
|
1.0
|
|
C
|
E:TRP210
|
3.6
|
175.7
|
1.0
|
|
OD2
|
E:ASP213
|
3.7
|
190.0
|
1.0
|
|
CG
|
E:ASP217
|
3.8
|
187.8
|
1.0
|
|
CG
|
E:GLU224
|
3.9
|
197.5
|
1.0
|
|
N
|
E:ASP217
|
4.1
|
187.8
|
1.0
|
|
N
|
E:ASP213
|
4.1
|
190.0
|
1.0
|
|
N
|
E:CYS212
|
4.1
|
192.9
|
1.0
|
|
N
|
E:ASP215
|
4.1
|
191.0
|
1.0
|
|
OD1
|
E:ASP223
|
4.2
|
197.0
|
1.0
|
|
CB
|
E:ASP217
|
4.2
|
187.8
|
1.0
|
|
CA
|
E:ASP215
|
4.3
|
191.0
|
1.0
|
|
CA
|
E:VAL211
|
4.4
|
186.6
|
1.0
|
|
N
|
E:VAL211
|
4.4
|
186.6
|
1.0
|
|
CB
|
E:ASP215
|
4.5
|
191.0
|
1.0
|
|
C
|
E:VAL211
|
4.5
|
186.6
|
1.0
|
|
CB
|
E:ASP213
|
4.5
|
190.0
|
1.0
|
|
C
|
E:ASP223
|
4.6
|
197.0
|
1.0
|
|
CA
|
E:TRP210
|
4.6
|
175.7
|
1.0
|
|
CB
|
E:TRP210
|
4.6
|
175.7
|
1.0
|
|
OE1
|
E:GLU224
|
4.6
|
197.5
|
1.0
|
|
CA
|
E:ASP223
|
4.6
|
197.0
|
1.0
|
|
N
|
E:ALA216
|
4.6
|
192.4
|
1.0
|
|
N
|
E:GLU224
|
4.7
|
197.5
|
1.0
|
|
CA
|
E:ASP213
|
4.8
|
190.0
|
1.0
|
|
CA
|
E:ASP217
|
4.8
|
187.8
|
1.0
|
|
OD1
|
E:ASP217
|
4.9
|
187.8
|
1.0
|
|
CA
|
E:ALA216
|
4.9
|
192.4
|
1.0
|
|
O
|
E:ASP223
|
4.9
|
197.0
|
1.0
|
|
CA
|
E:CYS212
|
4.9
|
192.9
|
1.0
|
|
N
|
E:ASP214
|
4.9
|
192.7
|
1.0
|
|
Calcium binding site 2 out
of 3 in 8yw0
Go back to
Calcium Binding Sites List in 8yw0
Calcium binding site 2 out
of 3 in the Semliki Forest Virus Viron
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Semliki Forest Virus Viron within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Ca301
b:181.6
occ:1.00
|
OD2
|
R:ASP223
|
2.4
|
192.2
|
1.0
|
|
O
|
R:TRP210
|
2.4
|
157.8
|
1.0
|
|
OD1
|
R:ASP213
|
2.4
|
177.1
|
1.0
|
|
OD2
|
R:ASP217
|
2.4
|
180.0
|
1.0
|
|
O
|
R:ASP215
|
2.4
|
180.5
|
1.0
|
|
OE2
|
R:GLU224
|
3.0
|
190.4
|
1.0
|
|
CG
|
R:ASP213
|
3.1
|
177.1
|
1.0
|
|
OD2
|
R:ASP213
|
3.2
|
177.1
|
1.0
|
|
CG
|
R:ASP217
|
3.3
|
180.0
|
1.0
|
|
CG
|
R:ASP223
|
3.4
|
192.2
|
1.0
|
|
C
|
R:TRP210
|
3.6
|
157.8
|
1.0
|
|
C
|
R:ASP215
|
3.6
|
180.5
|
1.0
|
|
CB
|
R:ASP217
|
3.6
|
180.0
|
1.0
|
|
N
|
R:ASP217
|
3.7
|
180.0
|
1.0
|
|
CB
|
R:ASP223
|
4.0
|
192.2
|
1.0
|
|
CB
|
R:TRP210
|
4.0
|
157.8
|
1.0
|
|
CD
|
R:GLU224
|
4.1
|
190.4
|
1.0
|
|
CA
|
R:TRP210
|
4.3
|
157.8
|
1.0
|
|
CA
|
R:ASP217
|
4.3
|
180.0
|
1.0
|
|
CA
|
R:ASP215
|
4.4
|
180.5
|
1.0
|
|
N
|
R:ASP215
|
4.4
|
180.5
|
1.0
|
|
OD1
|
R:ASP217
|
4.4
|
180.0
|
1.0
|
|
OD1
|
R:ASP223
|
4.4
|
192.2
|
1.0
|
|
N
|
R:ASP213
|
4.4
|
177.1
|
1.0
|
|
CB
|
R:ASP213
|
4.4
|
177.1
|
1.0
|
|
CB
|
R:ASP215
|
4.5
|
180.5
|
1.0
|
|
CG
|
R:GLU224
|
4.5
|
190.4
|
1.0
|
|
N
|
R:VAL211
|
4.6
|
175.3
|
1.0
|
|
N
|
R:ALA216
|
4.6
|
184.6
|
1.0
|
|
C
|
R:ALA216
|
4.7
|
184.6
|
1.0
|
|
N
|
R:CYS212
|
4.7
|
182.0
|
1.0
|
|
CA
|
R:ALA216
|
4.8
|
184.6
|
1.0
|
|
CA
|
R:VAL211
|
4.8
|
175.3
|
1.0
|
|
CA
|
R:ASP213
|
4.9
|
177.1
|
1.0
|
|
Calcium binding site 3 out
of 3 in 8yw0
Go back to
Calcium Binding Sites List in 8yw0
Calcium binding site 3 out
of 3 in the Semliki Forest Virus Viron
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Semliki Forest Virus Viron within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Ca301
b:196.9
occ:1.00
|
O
|
T:TRP210
|
2.3
|
165.5
|
1.0
|
|
OD2
|
T:ASP223
|
2.4
|
202.4
|
1.0
|
|
O
|
T:ASP215
|
2.4
|
197.1
|
1.0
|
|
OD1
|
T:ASP213
|
2.4
|
192.2
|
1.0
|
|
OD2
|
T:ASP217
|
2.5
|
185.5
|
1.0
|
|
OE2
|
T:GLU224
|
2.5
|
203.1
|
1.0
|
|
CG
|
T:ASP213
|
3.3
|
192.2
|
1.0
|
|
CG
|
T:ASP223
|
3.3
|
202.4
|
1.0
|
|
CG
|
T:ASP217
|
3.3
|
185.5
|
1.0
|
|
C
|
T:ASP215
|
3.5
|
197.1
|
1.0
|
|
C
|
T:TRP210
|
3.6
|
165.5
|
1.0
|
|
CD
|
T:GLU224
|
3.6
|
203.1
|
1.0
|
|
OD2
|
T:ASP213
|
3.6
|
192.2
|
1.0
|
|
CB
|
T:ASP217
|
3.7
|
185.5
|
1.0
|
|
N
|
T:ASP217
|
3.7
|
185.5
|
1.0
|
|
CB
|
T:ASP223
|
3.9
|
202.4
|
1.0
|
|
CG
|
T:GLU224
|
4.2
|
203.1
|
1.0
|
|
N
|
T:ASP215
|
4.2
|
197.1
|
1.0
|
|
N
|
T:ASP213
|
4.3
|
192.2
|
1.0
|
|
CA
|
T:ASP215
|
4.3
|
197.1
|
1.0
|
|
OD1
|
T:ASP223
|
4.3
|
202.4
|
1.0
|
|
CA
|
T:ASP217
|
4.3
|
185.5
|
1.0
|
|
N
|
T:CYS212
|
4.4
|
193.7
|
1.0
|
|
OD1
|
T:ASP217
|
4.4
|
185.5
|
1.0
|
|
CB
|
T:TRP210
|
4.4
|
165.5
|
1.0
|
|
CB
|
T:ASP215
|
4.4
|
197.1
|
1.0
|
|
N
|
T:VAL211
|
4.5
|
185.6
|
1.0
|
|
CA
|
T:TRP210
|
4.5
|
165.5
|
1.0
|
|
CA
|
T:VAL211
|
4.5
|
185.6
|
1.0
|
|
N
|
T:ALA216
|
4.6
|
195.4
|
1.0
|
|
OE1
|
T:GLU224
|
4.6
|
203.1
|
1.0
|
|
CB
|
T:ASP213
|
4.6
|
192.2
|
1.0
|
|
C
|
T:VAL211
|
4.7
|
185.6
|
1.0
|
|
C
|
T:ALA216
|
4.7
|
195.4
|
1.0
|
|
CA
|
T:ALA216
|
4.8
|
195.4
|
1.0
|
|
CA
|
T:ASP213
|
4.9
|
192.2
|
1.0
|
|
Reference:
T.Zheng,
J.Wang,
T.Zheng,
D.Yang.
N/A N/A.
Page generated: Thu Jul 10 08:36:26 2025
|
