Calcium in PDB 8zef: Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+

The structure of Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+, PDB code: 8zef was solved by K.Cheng, T.Gao, W.Hao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.65 / 3.21
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	68.855, 128.045, 302.999, 90, 90, 90
R / Rfree (%)	28.3 / 29.2

The binding sites of Calcium atom in the Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+ (pdb code 8zef). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+, PDB code: 8zef:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:138.7 occ:1.00 OD2 A:ASP154 2.1 102.5 1.0 OP1 B:DT4 2.2 121.0 1.0 OE2 A:GLU12 2.3 115.8 1.0 OD2 A:ASP10 2.5 101.2 1.0 CG A:ASP154 3.0 102.0 1.0 P B:DT4 3.2 121.4 1.0 CB A:ASP154 3.4 101.4 1.0 CD A:GLU12 3.4 116.5 1.0 OP2 B:DT4 3.5 121.7 1.0 CG A:ASP10 3.6 100.5 1.0 O5' B:DT4 3.6 122.5 1.0 OE1 A:GLU12 3.8 116.8 1.0 OD1 A:ASP10 4.0 99.8 1.0 OD1 A:ASP154 4.2 102.1 1.0 O A:HIS149 4.2 137.8 1.0 ND1 A:HIS149 4.2 136.7 1.0 C A:HIS149 4.2 137.3 1.0 CA A:HIS149 4.3 136.9 1.0 CE1 A:HIS149 4.3 136.7 1.0 O A:ARG150 4.4 151.1 1.0 CG A:GLU12 4.6 117.1 1.0 CG A:HIS149 4.6 137.6 1.0 C A:ARG150 4.6 152.0 1.0 CA A:ALA151 4.6 101.3 1.0 C5' B:DT4 4.6 123.0 1.0 O3' B:DT3 4.7 120.4 1.0 NE2 A:HIS149 4.8 137.6 1.0 N A:ALA151 4.8 102.2 1.0 N A:ARG150 4.8 152.6 1.0 CB A:ASP10 4.9 100.7 1.0 CA A:ASP154 4.9 101.0 1.0 CD2 A:HIS149 4.9 138.2 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Staphylococcus Aureus Ding Protein in Complex with Ssdna and CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca902 b:271.9 occ:1.00 OD1 A:ASP10 2.5 99.8 1.0 OD2 A:ASP95 2.9 100.7 1.0 O3' B:DT3 2.9 120.4 1.0 OD1 A:ASP95 3.0 101.2 1.0 OP1 B:DT4 3.2 121.0 1.0 CG A:ASP95 3.3 100.6 1.0 CG A:ASP10 3.5 100.5 1.0 P B:DT4 3.6 121.4 1.0 C3' B:DT3 4.0 120.2 1.0 C4' B:DT3 4.0 119.3 1.0 O A:HIS90 4.1 100.6 1.0 CA A:ASP10 4.2 100.5 1.0 N A:LEU11 4.3 91.2 1.0 OD2 A:ASP10 4.3 101.2 1.0 O5' B:DT4 4.4 122.5 1.0 CE2 A:PHE94 4.4 99.2 1.0 CB A:ASP10 4.5 100.7 1.0 O A:VAL9 4.5 99.7 1.0 C2' B:DT3 4.5 120.1 1.0 O A:LEU11 4.6 92.1 1.0 CD2 A:PHE94 4.6 98.0 1.0 CB A:ASP95 4.7 99.8 1.0 C5' B:DT3 4.8 119.3 1.0 C A:ASP10 4.8 101.4 1.0 N A:HIS90 4.9 100.2 1.0 OP2 B:DT4 4.9 121.7 1.0

K.Cheng, T.Gao, W.Hao. Structure of Staphylococcus Aureus Ding To Be Published.