Calcium in PDB 8zgp: Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis

All present enzymatic activity of Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis:
1.7.99.7;

The structure of Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis also contains other interesting chemical elements:

Iron

(Fe)

6 atoms

The binding sites of Calcium atom in the Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis (pdb code 8zgp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis, PDB code: 8zgp:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca804 b:14.2 occ:1.00 O2D A:HEM801 2.4 16.5 1.0 O1A A:HEM802 2.4 15.0 1.0 OE1 A:GLU411 2.4 18.6 1.0 OE2 A:GLU411 2.4 18.6 1.0 O A:GLY76 2.4 16.1 1.0 O A:HOH926 2.5 30.0 1.0 CD A:GLU411 2.7 18.6 1.0 OH A:TYR78 2.9 17.1 1.0 CGD A:HEM801 3.2 16.5 1.0 CGA A:HEM802 3.4 15.0 1.0 O1D A:HEM801 3.4 16.5 1.0 C A:GLY76 3.4 16.1 1.0 CZ A:TYR78 3.5 17.1 1.0 O2A A:HEM802 3.7 15.0 1.0 NH2 A:ARG332 3.9 18.5 1.0 N A:GLY76 3.9 16.1 1.0 CE1 A:TYR78 4.0 17.1 1.0 CA A:GLY76 4.0 16.1 1.0 CG A:GLU411 4.2 18.6 1.0 CE2 A:TYR78 4.2 17.1 1.0 OH A:TYR412 4.2 17.9 1.0 O A:HOH930 4.3 30.0 1.0 CBD A:HEM801 4.5 16.5 1.0 N A:ALA77 4.5 17.2 1.0 NH1 A:ARG332 4.6 18.5 1.0 CZ A:ARG332 4.7 18.5 1.0 CBA A:HEM802 4.7 15.0 1.0 CAD A:HEM801 4.8 16.5 1.0 O A:HOH912 4.8 30.0 1.0 CE2 A:TYR412 4.8 17.9 1.0 CZ A:TYR412 4.9 17.9 1.0 CA A:ALA77 4.9 17.2 1.0 CAA A:HEM802 5.0 15.0 1.0

Calcium binding site 2 out of 2 in the Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca804 b:14.2 occ:1.00 O2D B:HEM801 2.4 16.5 1.0 O1A B:HEM802 2.4 15.0 1.0 OE1 B:GLU411 2.4 18.6 1.0 OE2 B:GLU411 2.4 18.6 1.0 O B:GLY76 2.4 16.1 1.0 O B:HOH927 2.5 30.0 1.0 CD B:GLU411 2.7 18.6 1.0 OH B:TYR78 2.9 17.1 1.0 CGD B:HEM801 3.2 16.5 1.0 CGA B:HEM802 3.4 15.0 1.0 O1D B:HEM801 3.4 16.5 1.0 C B:GLY76 3.4 16.1 1.0 CZ B:TYR78 3.5 17.1 1.0 O2A B:HEM802 3.7 15.0 1.0 NH2 B:ARG332 3.9 18.5 1.0 N B:GLY76 3.9 16.1 1.0 CE1 B:TYR78 4.0 17.1 1.0 CA B:GLY76 4.0 16.1 1.0 CG B:GLU411 4.2 18.6 1.0 CE2 B:TYR78 4.2 17.1 1.0 OH B:TYR412 4.2 17.9 1.0 O B:HOH930 4.3 30.0 1.0 CBD B:HEM801 4.5 16.5 1.0 N B:ALA77 4.5 17.2 1.0 NH1 B:ARG332 4.6 18.5 1.0 CZ B:ARG332 4.7 18.5 1.0 CBA B:HEM802 4.7 15.0 1.0 CAD B:HEM801 4.8 16.5 1.0 O B:HOH912 4.8 30.0 1.0 CE2 B:TYR412 4.8 17.9 1.0 CZ B:TYR412 4.9 17.9 1.0 CA B:ALA77 4.9 17.2 1.0 CAA B:HEM802 5.0 15.0 1.0

C.C.Gopalasingam, Y.Shiro, T.Tosha. Cryoem Structure of Dimeric Quinol Dependent Nitric Oxide Reductase From Neisseria Meningitidis To Be Published.