Calcium in PDB 8zyx: Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab

All present enzymatic activity of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab:
3.2.1.18;

The binding sites of Calcium atom in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab (pdb code 8zyx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab, PDB code: 8zyx:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:30.0 occ:1.00 O A:ASP293 2.0 54.0 1.0 O A:HIS347 2.0 56.7 1.0 O A:GLY297 2.5 54.9 1.0 OD2 A:ASP324 2.6 49.1 1.0 O A:GLY345 2.8 57.2 1.0 C A:ASP293 3.2 49.0 1.0 C A:HIS347 3.3 49.3 1.0 C A:GLY345 3.5 53.5 1.0 C A:GLY297 3.6 50.8 1.0 CA A:GLY345 3.6 51.8 1.0 CG A:ASP324 3.7 44.5 1.0 CA A:GLY348 3.9 40.8 1.0 CA A:ASN294 3.9 47.7 1.0 N A:ASN294 4.0 46.4 1.0 N A:GLY348 4.0 43.9 1.0 N A:HIS347 4.1 49.2 1.0 CA A:ASP293 4.3 45.3 1.0 CA A:HIS347 4.3 47.1 1.0 N A:SER298 4.4 49.9 1.0 C A:ASN294 4.4 49.7 1.0 CA A:SER298 4.4 47.0 1.0 N A:GLY297 4.4 50.6 1.0 OD1 A:ASP324 4.4 42.9 1.0 CB A:ASP293 4.5 44.7 1.0 N A:ASP293 4.5 45.4 1.0 N A:GLY346 4.6 53.9 1.0 O A:GLU344 4.6 55.9 1.0 CA A:GLY297 4.6 49.6 1.0 N A:TRP295 4.6 49.1 1.0 CB A:ASP324 4.6 39.1 1.0 C A:GLY346 4.8 53.1 1.0 OD1 A:ASP293 4.8 52.3 1.0 N A:GLY345 4.9 51.1 1.0 O A:ASN294 5.0 53.4 1.0

Calcium binding site 2 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:30.0 occ:1.00 O B:HIS347 2.2 56.1 1.0 O B:ASP293 2.2 54.0 1.0 OD2 B:ASP324 2.4 50.6 1.0 O B:GLY297 2.6 54.0 1.0 O B:GLY345 3.2 56.7 1.0 C B:HIS347 3.4 51.6 1.0 C B:ASP293 3.4 50.3 1.0 CA B:GLY345 3.6 53.4 1.0 C B:GLY297 3.6 50.6 1.0 C B:GLY345 3.6 54.3 1.0 CG B:ASP324 3.6 44.9 1.0 CA B:GLY348 3.9 42.6 1.0 N B:GLY348 4.1 44.4 1.0 CA B:ASN294 4.1 50.6 1.0 N B:ASN294 4.2 49.0 1.0 N B:SER298 4.3 48.4 1.0 CA B:SER298 4.3 45.9 1.0 N B:HIS347 4.3 50.2 1.0 CB B:ASP324 4.4 41.4 1.0 CA B:HIS347 4.5 50.5 1.0 CA B:ASP293 4.5 45.9 1.0 N B:GLY297 4.5 51.6 1.0 O B:GLU344 4.5 58.6 1.0 OD1 B:ASP324 4.5 44.4 1.0 C B:ASN294 4.6 52.3 1.0 CA B:GLY297 4.6 49.0 1.0 N B:GLY346 4.6 56.9 1.0 CB B:ASP293 4.7 45.9 1.0 N B:ASP293 4.7 46.4 1.0 N B:GLY345 4.8 52.3 1.0 N B:TRP295 4.9 53.3 1.0 C B:GLY346 5.0 56.0 1.0

Calcium binding site 3 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca503 b:30.0 occ:1.00 O C:ASP293 2.1 45.3 1.0 O C:HIS347 2.3 44.2 1.0 O C:GLY297 2.4 43.5 1.0 OD2 C:ASP324 2.5 40.5 1.0 O C:GLY345 2.9 48.6 1.0 C C:ASP293 3.2 40.6 1.0 C C:GLY345 3.5 45.5 1.0 C C:HIS347 3.5 37.5 1.0 C C:GLY297 3.5 40.7 1.0 CA C:GLY345 3.5 43.6 1.0 CG C:ASP324 3.7 37.3 1.0 N C:ASN294 4.0 38.4 1.0 CA C:GLY348 4.1 29.8 1.0 CA C:ASN294 4.1 40.6 1.0 CA C:ASP293 4.1 34.0 1.0 CB C:ASP293 4.2 39.0 1.0 N C:SER298 4.2 41.3 1.0 CA C:SER298 4.2 37.5 1.0 N C:HIS347 4.2 40.9 1.0 N C:GLY348 4.3 30.3 1.0 C C:ASN294 4.5 46.0 1.0 N C:GLY297 4.5 47.8 1.0 N C:ASP293 4.5 34.6 1.0 CA C:HIS347 4.5 36.2 1.0 OD1 C:ASP324 4.5 38.2 1.0 CB C:ASP324 4.6 33.5 1.0 CA C:GLY297 4.6 44.2 1.0 OD1 C:ASP293 4.6 49.8 1.0 N C:GLY346 4.6 43.5 1.0 N C:TRP295 4.8 45.0 1.0 CG C:ASP293 4.8 45.5 1.0 O C:GLU344 4.8 49.1 1.0 N C:GLY345 4.9 44.7 1.0 O C:ASN294 5.0 47.8 1.0

Calcium binding site 4 out of 4 in the Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav- F6-R54S Fab within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca503 b:30.0 occ:1.00 O D:ASP293 2.0 48.6 1.0 O D:HIS347 2.2 52.8 1.0 O D:GLY297 2.5 47.0 1.0 OD2 D:ASP324 2.6 42.4 1.0 O D:GLY345 3.1 53.2 1.0 C D:ASP293 3.2 44.3 1.0 C D:HIS347 3.4 45.1 1.0 C D:GLY345 3.6 50.5 1.0 C D:GLY297 3.6 44.2 1.0 CA D:GLY345 3.6 46.8 1.0 CG D:ASP324 3.7 40.3 1.0 CA D:GLY348 4.0 36.0 1.0 CA D:ASN294 4.0 45.2 1.0 N D:ASN294 4.0 43.3 1.0 N D:GLY348 4.2 37.0 1.0 CA D:ASP293 4.3 40.0 1.0 N D:HIS347 4.3 45.7 1.0 CA D:SER298 4.3 42.4 1.0 N D:SER298 4.3 43.5 1.0 CB D:ASP293 4.5 40.7 1.0 C D:ASN294 4.5 45.1 1.0 N D:ASP293 4.5 42.0 1.0 CB D:ASP324 4.5 37.9 1.0 N D:GLY297 4.5 47.0 1.0 CA D:HIS347 4.5 46.3 1.0 N D:GLY346 4.6 51.2 1.0 OD1 D:ASP324 4.6 39.4 1.0 O D:GLU344 4.6 54.9 1.0 CA D:GLY297 4.7 44.8 1.0 N D:TRP295 4.7 45.5 1.0 OD1 D:ASP293 4.8 46.7 1.0 N D:GLY345 4.9 47.2 1.0 C D:GLY346 5.0 47.4 1.0

X.Wang, J.Ge, X.Li. Neuraminidase of A/Switzerland/9715293/2013 H3N2 in Complex with Cav-F6-R54S Fab To Be Published.