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Calcium in PDB 9b13: Cryo-Em Structure of Phospholipase Cepsilon pH-Cooh in Complex with An Antigen-Binding Fragment (Composite Structure)

Enzymatic activity of Cryo-Em Structure of Phospholipase Cepsilon pH-Cooh in Complex with An Antigen-Binding Fragment (Composite Structure)

All present enzymatic activity of Cryo-Em Structure of Phospholipase Cepsilon pH-Cooh in Complex with An Antigen-Binding Fragment (Composite Structure):
3.1.4.11;

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Phospholipase Cepsilon pH-Cooh in Complex with An Antigen-Binding Fragment (Composite Structure) (pdb code 9b13). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Phospholipase Cepsilon pH-Cooh in Complex with An Antigen-Binding Fragment (Composite Structure), PDB code: 9b13:

Calcium binding site 1 out of 1 in 9b13

Go back to Calcium Binding Sites List in 9b13
Calcium binding site 1 out of 1 in the Cryo-Em Structure of Phospholipase Cepsilon pH-Cooh in Complex with An Antigen-Binding Fragment (Composite Structure)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Phospholipase Cepsilon pH-Cooh in Complex with An Antigen-Binding Fragment (Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2301

b:88.9
occ:1.00
OE2 A:GLU1467 2.2 123.8 1.0
CD A:GLU1467 2.9 123.8 1.0
OE1 A:GLU1467 3.0 123.8 1.0
OD2 A:ASP1420 3.2 113.1 1.0
OE1 A:GLU1418 4.1 99.1 1.0
ND2 A:ASN1389 4.1 103.0 1.0
CG A:ASP1420 4.3 113.1 1.0
CE1 A:HIS1388 4.4 93.9 1.0
CG A:GLU1467 4.4 123.8 1.0
OD1 A:ASP1420 4.7 113.1 1.0
CD A:GLU1418 4.7 99.1 1.0
CG A:ASN1389 4.9 103.0 1.0
OD1 A:ASN1389 5.0 103.0 1.0

Reference:

K.Samassekou, A.M.Lyon. Cryo-Em Structure of Phospholipase Ce Reveals Roles For the N-Terminal Domains in Maximum Activity To Be Published.
Page generated: Thu Jul 10 08:52:17 2025

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