Calcium in PDB 9d59: Structure of Citrobacter Multi-Ubiquitin Protein Filament

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>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Structure of Citrobacter Multi-Ubiquitin Protein Filament (pdb code 9d59). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Structure of Citrobacter Multi-Ubiquitin Protein Filament, PDB code: 9d59:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:105.7 occ:1.00 OE1 A:GLU147 2.4 89.0 1.0 O A:GLY143 2.4 93.8 1.0 OD2 B:ASP85 2.4 86.5 1.0 O A:LEU141 2.4 84.1 1.0 OE2 A:GLU147 2.5 87.1 1.0 O A:GLY145 2.5 88.8 1.0 CD A:GLU147 2.8 88.5 1.0 C A:LEU141 3.6 80.1 1.0 CG B:ASP85 3.6 85.9 1.0 C A:GLY143 3.6 95.7 1.0 C A:GLY145 3.7 84.5 1.0 N A:GLY143 4.1 84.5 1.0 CB B:ASP85 4.1 79.3 1.0 CA A:LEU141 4.3 73.3 1.0 CG A:GLU147 4.3 79.1 1.0 C A:ASP142 4.3 86.5 1.0 CA A:GLY143 4.4 86.5 1.0 N A:GLY145 4.4 91.7 1.0 N A:GLU147 4.4 80.8 1.0 C A:ASP144 4.4 98.2 1.0 NH2 B:ARG86 4.5 85.2 1.0 CA A:ILE146 4.5 75.6 1.0 N A:ASP142 4.5 80.1 1.0 N A:ILE146 4.6 77.9 1.0 N A:ASP144 4.6 98.7 1.0 OD1 B:ASP85 4.6 79.6 1.0 CA A:GLY145 4.7 84.1 1.0 O A:PHE89 4.7 70.8 1.0 O A:ASP144 4.7 98.6 1.0 CB A:LEU141 4.7 66.6 1.0 CA A:ASP142 4.7 81.1 1.0 CA A:ASP144 4.8 99.4 1.0 O A:ASP142 4.8 91.2 1.0 CD2 A:TYR88 4.8 66.5 1.0 C A:ILE146 4.9 78.8 1.0 O B:ASP85 4.9 77.2 1.0

Calcium binding site 2 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:117.5 occ:1.00 O A:ASP63 2.4 84.1 1.0 OE1 A:GLU68 2.4 79.6 1.0 OE2 B:GLU62 2.4 89.3 1.0 OE2 A:GLU62 2.4 89.3 1.0 OE1 B:GLU62 2.5 96.0 1.0 CD B:GLU62 2.8 92.3 1.0 OE2 A:GLU68 2.8 93.4 1.0 CD A:GLU68 2.9 83.8 1.0 C A:ASP63 3.6 82.7 1.0 CD A:GLU62 3.6 92.3 1.0 CA B:CA302 3.7 117.5 1.0 NH1 A:ARG65 4.0 80.5 1.0 CG B:GLU62 4.3 79.2 1.0 CG A:GLU62 4.3 79.2 1.0 CG A:ARG65 4.4 71.2 1.0 CG A:GLU68 4.4 76.0 1.0 N A:ILE64 4.4 76.5 1.0 CA A:ILE64 4.4 72.4 1.0 N A:ARG65 4.5 72.8 1.0 CA A:ASP63 4.5 79.4 1.0 OE1 A:GLU62 4.5 96.0 1.0 N A:ASP63 4.6 82.1 1.0 O B:ASP63 4.7 84.1 1.0 CB A:ASP63 4.7 85.0 1.0 N B:ASP63 4.9 82.1 1.0 C A:ILE64 5.0 75.0 1.0 CD A:ARG65 5.0 71.4 1.0

Calcium binding site 3 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:101.9 occ:1.00 OD2 A:ASP30 2.3 83.6 1.0 OD2 C:ASP30 2.3 83.6 1.0 O C:THR32 2.3 77.9 1.0 O A:THR32 2.3 77.9 1.0 OG1 A:THR32 2.7 81.7 1.0 OG1 C:THR32 2.7 81.7 1.0 CG A:ASP30 3.1 86.0 1.0 CG C:ASP30 3.1 86.0 1.0 OD1 A:ASP30 3.2 92.7 1.0 OD1 C:ASP30 3.2 92.7 1.0 C A:THR32 3.3 77.0 1.0 C C:THR32 3.3 77.0 1.0 CB A:THR32 3.8 80.7 1.0 CB C:THR32 3.8 80.7 1.0 CA A:THR32 4.0 78.2 1.0 CA C:THR32 4.0 78.2 1.0 N A:THR32 4.2 81.7 1.0 N C:THR32 4.3 81.7 1.0 N A:PRO33 4.3 72.0 1.0 N C:PRO33 4.3 72.0 1.0 OE1 C:GLN37 4.4 70.3 1.0 OE1 A:GLN37 4.4 70.3 1.0 CB A:ASP30 4.5 77.2 1.0 CB C:ASP30 4.5 77.2 1.0 CA C:PRO33 4.6 71.3 1.0 CA A:PRO33 4.6 71.3 1.0

Calcium binding site 4 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca304 b:105.1 occ:1.00 O A:ARG125 2.4 96.2 1.0 OD1 A:ASP130 2.6 90.3 1.0 CG A:ASP130 3.6 89.9 1.0 C A:ARG125 3.6 95.8 1.0 OD2 A:ASP130 3.8 95.6 1.0 N A:ARG125 4.0 86.1 1.0 CA A:ARG125 4.4 89.7 1.0 O A:GLU128 4.5 100.7 1.0 N A:GLU126 4.6 92.8 1.0 CA A:GLU126 4.7 98.2 1.0 CB A:ASP130 4.9 81.3 1.0 N A:ASP130 4.9 89.0 1.0

Calcium binding site 5 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:105.7 occ:1.00 OD2 A:ASP85 2.4 86.5 1.0 OE1 B:GLU147 2.4 89.0 1.0 O B:LEU141 2.4 84.1 1.0 O B:GLY143 2.4 93.8 1.0 OE2 B:GLU147 2.5 87.1 1.0 O B:GLY145 2.5 88.8 1.0 CD B:GLU147 2.8 88.5 1.0 CG A:ASP85 3.5 85.9 1.0 C B:LEU141 3.5 80.1 1.0 C B:GLY143 3.6 95.7 1.0 C B:GLY145 3.7 84.5 1.0 CB A:ASP85 4.0 79.3 1.0 N B:GLY143 4.1 84.5 1.0 CA B:LEU141 4.2 73.3 1.0 CG B:GLU147 4.3 79.1 1.0 C B:ASP142 4.3 86.5 1.0 CA B:GLY143 4.4 86.5 1.0 N B:GLY145 4.4 91.7 1.0 N B:GLU147 4.4 80.8 1.0 C B:ASP144 4.5 98.2 1.0 N B:ASP142 4.5 80.1 1.0 NH2 A:ARG86 4.5 85.2 1.0 CA B:ILE146 4.5 75.6 1.0 OD1 A:ASP85 4.6 79.6 1.0 N B:ILE146 4.6 77.9 1.0 N B:ASP144 4.7 98.7 1.0 O B:PHE89 4.7 70.8 1.0 CB B:LEU141 4.7 66.6 1.0 CA B:GLY145 4.7 84.1 1.0 CA B:ASP142 4.7 81.1 1.0 O A:ASP85 4.7 77.2 1.0 O B:ASP144 4.7 98.6 1.0 CD2 B:TYR88 4.8 66.5 1.0 O B:ASP142 4.8 91.2 1.0 CA B:ASP144 4.8 99.4 1.0 C B:ILE146 4.9 78.8 1.0

Calcium binding site 6 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca302 b:117.5 occ:1.00 O B:ASP63 2.3 84.1 1.0 OE2 A:GLU62 2.4 89.3 1.0 OE1 B:GLU68 2.4 79.6 1.0 OE2 B:GLU62 2.4 89.3 1.0 OE1 A:GLU62 2.5 96.0 1.0 CD A:GLU62 2.8 92.3 1.0 OE2 B:GLU68 2.8 93.4 1.0 CD B:GLU68 2.9 83.8 1.0 C B:ASP63 3.5 82.7 1.0 CD B:GLU62 3.6 92.3 1.0 CA A:CA302 3.7 117.5 1.0 NH1 B:ARG65 4.1 80.5 1.0 CG A:GLU62 4.3 79.2 1.0 CG B:GLU62 4.3 79.2 1.0 CG B:ARG65 4.4 71.2 1.0 N B:ILE64 4.4 76.5 1.0 CG B:GLU68 4.4 76.0 1.0 CA B:ILE64 4.4 72.4 1.0 CA B:ASP63 4.5 79.4 1.0 N B:ARG65 4.5 72.8 1.0 OE1 B:GLU62 4.5 96.0 1.0 N B:ASP63 4.6 82.1 1.0 CB B:ASP63 4.7 85.0 1.0 O A:ASP63 4.8 84.1 1.0 C B:ILE64 4.9 75.0 1.0 CD B:ARG65 5.0 71.4 1.0

Calcium binding site 7 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca303 b:101.9 occ:1.00 OD2 B:ASP30 2.3 83.6 1.0 O B:THR32 2.4 77.9 1.0 OG1 B:THR32 2.8 81.7 1.0 CG B:ASP30 3.2 86.0 1.0 OD1 B:ASP30 3.3 92.7 1.0 C B:THR32 3.4 77.0 1.0 CB B:THR32 3.8 80.7 1.0 CA B:THR32 4.1 78.2 1.0 N B:PRO33 4.4 72.0 1.0 N B:THR32 4.4 81.7 1.0 OE1 B:GLN37 4.4 70.3 1.0 CA B:PRO33 4.6 71.3 1.0 CB B:ASP30 4.6 77.2 1.0

Calcium binding site 8 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca304 b:105.1 occ:1.00 O D:ARG125 2.3 96.2 1.0 O B:ARG125 2.3 96.2 1.0 OD1 D:ASP130 2.7 90.3 1.0 OD1 B:ASP130 2.7 90.3 1.0 C D:ARG125 3.5 95.8 1.0 C B:ARG125 3.5 95.8 1.0 CG D:ASP130 3.6 89.9 1.0 CG B:ASP130 3.6 89.9 1.0 OD2 D:ASP130 3.8 95.6 1.0 OD2 B:ASP130 3.8 95.6 1.0 N B:ARG125 3.9 86.1 1.0 N D:ARG125 3.9 86.1 1.0 CA D:ARG125 4.3 89.7 1.0 CA B:ARG125 4.3 89.7 1.0 N D:GLU126 4.5 92.8 1.0 N B:GLU126 4.5 92.8 1.0 O D:GLU128 4.7 100.7 1.0 O B:GLU128 4.7 100.7 1.0 CA D:GLU126 4.7 98.2 1.0 CA B:GLU126 4.7 98.2 1.0 C B:GLU124 4.9 80.4 1.0 C D:GLU124 4.9 80.4 1.0 CA B:GLU124 5.0 77.1 1.0 CA D:GLU124 5.0 77.1 1.0 CB D:ASP130 5.0 81.3 1.0 CB B:ASP130 5.0 81.3 1.0

Calcium binding site 9 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca301 b:105.7 occ:1.00 OE1 C:GLU147 2.4 89.0 1.0 O C:LEU141 2.4 84.1 1.0 O C:GLY143 2.4 93.8 1.0 OD2 D:ASP85 2.4 86.5 1.0 OE2 C:GLU147 2.5 87.1 1.0 O C:GLY145 2.5 88.8 1.0 CD C:GLU147 2.8 88.5 1.0 C C:LEU141 3.5 80.1 1.0 CG D:ASP85 3.6 85.9 1.0 C C:GLY143 3.6 95.7 1.0 C C:GLY145 3.7 84.5 1.0 N C:GLY143 4.1 84.5 1.0 CB D:ASP85 4.1 79.3 1.0 CA C:LEU141 4.2 73.3 1.0 CG C:GLU147 4.3 79.1 1.0 C C:ASP142 4.3 86.5 1.0 CA C:GLY143 4.4 86.5 1.0 N C:GLY145 4.4 91.7 1.0 N C:GLU147 4.4 80.8 1.0 C C:ASP144 4.4 98.2 1.0 NH2 D:ARG86 4.5 85.2 1.0 N C:ASP142 4.5 80.1 1.0 CA C:ILE146 4.6 75.6 1.0 N C:ILE146 4.6 77.9 1.0 N C:ASP144 4.6 98.7 1.0 OD1 D:ASP85 4.6 79.6 1.0 CA C:GLY145 4.7 84.1 1.0 O C:PHE89 4.7 70.8 1.0 CB C:LEU141 4.7 66.6 1.0 CA C:ASP142 4.7 81.1 1.0 O C:ASP144 4.7 98.6 1.0 O C:ASP142 4.8 91.2 1.0 CA C:ASP144 4.8 99.4 1.0 CD2 C:TYR88 4.8 66.5 1.0 C C:ILE146 4.9 78.8 1.0 O D:ASP85 4.9 77.2 1.0

Calcium binding site 10 out of 14 in the Structure of Citrobacter Multi-Ubiquitin Protein Filament


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of Citrobacter Multi-Ubiquitin Protein Filament within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca302 b:117.5 occ:1.00 O C:ASP63 2.4 84.1 1.0 OE1 C:GLU68 2.4 79.6 1.0 OE2 D:GLU62 2.4 89.3 1.0 OE2 C:GLU62 2.4 89.3 1.0 OE1 D:GLU62 2.5 96.0 1.0 CD D:GLU62 2.8 92.3 1.0 OE2 C:GLU68 2.9 93.4 1.0 CD C:GLU68 3.0 83.8 1.0 C C:ASP63 3.6 82.7 1.0 CD C:GLU62 3.6 92.3 1.0 CA D:CA302 3.7 117.5 1.0 NH1 C:ARG65 4.0 80.5 1.0 CG D:GLU62 4.3 79.2 1.0 CG C:ARG65 4.3 71.2 1.0 CG C:GLU62 4.4 79.2 1.0 CG C:GLU68 4.4 76.0 1.0 N C:ILE64 4.4 76.5 1.0 CA C:ILE64 4.5 72.4 1.0 N C:ARG65 4.5 72.8 1.0 CA C:ASP63 4.5 79.4 1.0 OE1 C:GLU62 4.6 96.0 1.0 N C:ASP63 4.6 82.1 1.0 CB C:ASP63 4.7 85.0 1.0 O D:ASP63 4.7 84.1 1.0 N D:ASP63 4.9 82.1 1.0 CD C:ARG65 4.9 71.4 1.0 C C:ILE64 5.0 75.0 1.0

M.Gong, Q.Ye, Y.Gu, L.R.Chambers, M.Matyszewski, K.D.Corbett. Structural Diversity and Oligomerization of Bacterial Ubiquitin-Like Proteins To Be Published.