Calcium in PDB 9d5a: Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer

The binding sites of Calcium atom in the Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer (pdb code 9d5a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer, PDB code: 9d5a:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:105.7 occ:1.00 OE1 A:GLU147 2.3 112.8 1.0 OE2 A:GLU147 2.4 110.0 1.0 O A:LEU141 2.4 107.7 1.0 O A:GLY145 2.5 114.6 1.0 O A:GLY143 2.5 116.8 1.0 CD A:GLU147 2.7 111.4 1.0 C A:LEU141 3.5 105.9 1.0 C A:GLY145 3.7 107.3 1.0 C A:GLY143 3.7 116.2 1.0 CG A:GLU147 4.2 104.1 1.0 N A:GLY143 4.2 111.2 1.0 CA A:LEU141 4.3 100.5 1.0 N A:GLU147 4.3 102.8 1.0 C A:ASP142 4.4 112.8 1.0 N A:GLY145 4.4 116.5 1.0 C A:ASP144 4.5 119.8 1.0 CA A:ILE146 4.5 100.5 1.0 CA A:GLY143 4.5 113.1 1.0 N A:ILE146 4.5 101.7 1.0 N A:ASP142 4.5 107.1 1.0 O A:PHE89 4.6 98.4 1.0 CA A:GLY145 4.7 108.5 1.0 CB A:LEU141 4.7 95.5 1.0 CA A:ASP142 4.7 109.5 1.0 O A:ASP144 4.7 120.0 1.0 N A:ASP144 4.7 117.3 1.0 CD2 A:TYR88 4.8 95.7 1.0 O A:ASP142 4.8 118.3 1.0 C A:ILE146 4.8 103.7 1.0 CA A:ASP144 4.8 119.3 1.0 CB A:GLU147 5.0 96.6 1.0

Calcium binding site 2 out of 5 in the Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:117.5 occ:1.00 O A:ASP63 2.4 114.9 1.0 OE1 A:GLU68 2.4 112.3 1.0 OE2 A:GLU68 2.8 117.4 1.0 CD A:GLU68 3.0 111.0 1.0 OE2 A:GLU62 3.0 120.5 1.0 C A:ASP63 3.6 110.1 1.0 CD A:GLU62 4.0 126.9 1.0 CG A:GLU62 4.2 115.0 1.0 NH1 A:ARG65 4.3 105.4 1.0 CG A:GLU68 4.5 103.3 1.0 N A:ILE64 4.5 106.1 1.0 CG A:ARG65 4.5 100.7 1.0 CA A:ILE64 4.5 103.9 1.0 CA A:ASP63 4.5 107.9 1.0 N A:ASP63 4.6 108.6 1.0 N A:ARG65 4.6 102.6 1.0 CB A:ASP63 4.8 113.6 1.0

Calcium binding site 3 out of 5 in the Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:101.9 occ:1.00 OD2 A:ASP30 2.3 111.8 1.0 O A:THR32 2.4 108.6 1.0 OG1 A:THR32 2.6 105.1 1.0 CG A:ASP30 3.2 111.4 1.0 C A:THR32 3.4 104.8 1.0 OD1 A:ASP30 3.4 116.8 1.0 CB A:THR32 3.8 103.0 1.0 CA A:THR32 4.0 103.6 1.0 OE1 A:GLN37 4.3 98.7 1.0 N A:THR32 4.4 107.6 1.0 N A:PRO33 4.4 102.1 1.0 CB A:ASP30 4.6 107.0 1.0 CA A:PRO33 4.7 100.0 1.0 CG2 A:THR32 5.0 106.1 1.0

Calcium binding site 4 out of 5 in the Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca304 b:105.1 occ:1.00 O A:ARG125 2.4 121.8 1.0 OD1 A:ASP130 2.5 121.3 1.0 CG A:ASP130 3.4 118.2 1.0 OD2 A:ASP130 3.6 123.2 1.0 C A:ARG125 3.6 120.8 1.0 N A:ARG125 4.0 113.9 1.0 CA A:ARG125 4.4 115.2 1.0 O A:GLU128 4.5 125.0 1.0 N A:GLU126 4.6 124.1 1.0 CA A:GLU126 4.8 130.1 1.0 CB A:ASP130 4.8 107.1 1.0 N A:ASP130 4.9 114.5 1.0 C A:GLU124 5.0 110.2 1.0

Calcium binding site 5 out of 5 in the Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Citrobacter Multi-Ubiquitin Protein, Local Refinement of One Full-Length Protomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca305 b:119.6 occ:1.00 O A:GLY215 2.3 127.7 1.0 O A:LEU211 2.3 128.5 1.0 O A:THR213 2.7 126.5 1.0 OE1 A:GLU217 2.8 133.5 1.0 OE2 A:GLU217 3.1 133.3 1.0 CD A:GLU217 3.3 134.5 1.0 C A:LEU211 3.5 127.9 1.0 C A:GLY215 3.5 130.0 1.0 C A:THR213 4.0 125.7 1.0 CA A:LEU211 4.1 128.1 1.0 CA A:ILE216 4.3 132.6 1.0 CB A:LEU211 4.3 126.3 1.0 O A:LYS157 4.3 130.1 1.0 N A:ILE216 4.3 132.7 1.0 N A:GLY215 4.4 126.1 1.0 OG1 A:THR213 4.4 131.9 1.0 N A:THR213 4.4 127.9 1.0 C A:PRO214 4.5 125.9 1.0 N A:ARG212 4.5 125.5 1.0 CA A:GLY215 4.6 129.5 1.0 C A:ARG212 4.6 128.5 1.0 N A:GLU217 4.6 134.5 1.0 CA A:THR213 4.7 125.7 1.0 CA A:ARG212 4.8 126.3 1.0 CG A:GLU217 4.8 139.6 1.0 O A:PRO214 4.8 129.9 1.0 N A:PRO214 4.9 123.1 1.0 C A:ILE216 4.9 135.7 1.0 CA A:PRO214 5.0 122.3 1.0

M.Gong, Q.Ye, Y.Gu, L.R.Chambers, M.Matyszewski, K.D.Corbett. Structural Diversity and Oligomerization of Bacterial Ubiquitin-Like Proteins To Be Published.