Calcium in PDB 9doz: Myocilin Olf Oligomers

The structure of Myocilin Olf Oligomers, PDB code: 9doz was solved by H.F.Scelsi, D.J.E.Huard, R.L.Lieberman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.26 / 1.45
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.268, 50.895, 50.49, 90, 96.68, 90
R / Rfree (%)	16.7 / 19.6

The structure of Myocilin Olf Oligomers also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Calcium atom in the Myocilin Olf Oligomers (pdb code 9doz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Myocilin Olf Oligomers, PDB code: 9doz:

Calcium binding site 1 out of 1 in the Myocilin Olf Oligomers


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Myocilin Olf Oligomers within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:6.2 occ:1.00 OD2 A:ASP380 2.3 8.4 1.0 O A:ALA429 2.3 6.5 1.0 O A:ILE477 2.4 7.0 1.0 O A:HOH790 2.4 6.0 1.0 OD1 A:ASP478 2.4 8.6 1.0 OD1 A:ASN428 2.5 7.0 1.0 O A:HOH808 2.5 10.0 1.0 OD1 A:ASP380 3.0 8.6 1.0 CG A:ASP380 3.0 9.0 1.0 C A:ILE477 3.4 5.8 1.0 C A:ALA429 3.6 6.6 1.0 CG A:ASN428 3.6 5.6 1.0 CG A:ASP478 3.6 11.7 1.0 NA A:NA602 4.0 8.1 1.0 N A:ALA429 4.1 6.7 1.0 CA A:ASP478 4.2 6.1 1.0 N A:ASP478 4.2 5.8 1.0 N A:ILE477 4.3 6.0 1.0 ND2 A:ASN428 4.3 6.4 1.0 O A:HOH864 4.4 10.4 1.0 CA A:ILE477 4.4 7.7 1.0 O A:HOH733 4.4 8.1 1.0 OH A:TYR371 4.5 9.4 1.0 CA A:ALA429 4.5 8.2 1.0 OD2 A:ASP478 4.5 11.2 1.0 N A:PHE430 4.5 5.9 1.0 CB A:ASP380 4.5 7.6 1.0 CB A:ASP478 4.5 8.8 1.0 O A:HOH807 4.5 7.9 1.0 CA A:PHE430 4.6 6.4 1.0 CB A:PHE430 4.6 6.8 1.0 CB A:ASN428 4.7 6.8 1.0 O A:LEU381 4.8 8.4 1.0 CE2 A:TYR371 4.9 6.8 1.0

H.F.Scelsi, E.G.S.Close, D.J.E.Huard, E.Dunn, N.Bogdanovic, S.H.W.Mudiyanselage, A.Grant, S.M.Stagg, I.Schmidt-Krey, W.D.Van Horn, R.L.Lieberman. Detection of Non-Native Species Formed During Fibrillization of the Myocilin Olfactomedin Domain Protein Sci. V. 34 2025.
ISSN: ESSN 1469-896X
DOI: 10.1002/PRO.70063