Calcium in PDB 9e2p: Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613)

The structure of Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613) also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Calcium atom in the Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613) (pdb code 9e2p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613), PDB code: 9e2p:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca604 b:76.8 occ:1.00 O A:THR203 2.5 89.5 1.0 OD1 A:ASP199 2.5 82.3 1.0 OD1 A:ASP201 2.7 87.7 1.0 OD1 A:ASP197 2.8 71.6 1.0 OD2 A:ASP201 2.9 87.7 1.0 OE2 A:GLU208 3.0 91.5 1.0 OE1 A:GLU208 3.1 91.5 1.0 CG A:ASP201 3.2 87.7 1.0 CG A:ASP199 3.4 82.3 1.0 CD A:GLU208 3.4 91.5 1.0 OD2 A:ASP199 3.5 82.3 1.0 C A:THR203 3.6 89.5 1.0 CG A:ASP197 3.9 71.6 1.0 OD1 A:ASN205 4.2 99.3 1.0 CA A:LEU204 4.3 86.9 1.0 N A:ASN205 4.4 99.3 1.0 N A:LEU204 4.4 86.9 1.0 OG1 A:THR203 4.4 89.5 1.0 CG A:ASN205 4.5 99.3 1.0 OD2 A:ASP197 4.6 71.6 1.0 N A:THR203 4.6 89.5 1.0 CB A:ASP201 4.6 87.7 1.0 CA A:THR203 4.6 89.5 1.0 C A:LEU204 4.8 86.9 1.0 CB A:ASP199 4.8 82.3 1.0 N A:ASP199 4.8 82.3 1.0 ND2 A:ASN205 4.9 99.3 1.0 CG A:GLU208 4.9 91.5 1.0 CB A:ASP197 5.0 71.6 1.0 N A:ASP201 5.0 87.7 1.0

Calcium binding site 2 out of 4 in the Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca605 b:84.4 occ:1.00 OD1 A:ASP319 2.5 87.2 1.0 O A:ALA323 2.5 72.6 1.0 OE1 A:GLU328 2.5 81.1 1.0 OD1 A:ASP321 2.6 85.6 1.0 OD1 A:ASP317 2.8 76.9 1.0 OE2 A:GLU328 2.9 81.1 1.0 CD A:GLU328 3.0 81.1 1.0 OD2 A:ASP319 3.1 87.2 1.0 OD2 A:ASP321 3.1 85.6 1.0 CG A:ASP319 3.1 87.2 1.0 CG A:ASP321 3.2 85.6 1.0 C A:ALA323 3.6 72.6 1.0 CG A:ASP317 4.0 76.9 1.0 N A:SER325 4.0 78.0 1.0 CA A:LEU324 4.3 70.2 1.0 N A:LEU324 4.3 70.2 1.0 CG A:GLU328 4.5 81.1 1.0 OD2 A:ASP317 4.6 76.9 1.0 C A:LEU324 4.6 70.2 1.0 CA A:ALA323 4.6 72.6 1.0 CB A:ASP319 4.6 87.2 1.0 N A:ALA323 4.6 72.6 1.0 CB A:SER325 4.6 78.0 1.0 CB A:ASP321 4.7 85.6 1.0 N A:ASP319 4.8 87.2 1.0 N A:ASP321 4.9 85.6 1.0 CB A:ALA323 4.9 72.6 1.0 CA A:SER325 5.0 78.0 1.0 CA A:ASP317 5.0 76.9 1.0

Calcium binding site 3 out of 4 in the Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca604 b:76.8 occ:1.00 O C:THR203 2.5 89.5 1.0 OD1 C:ASP199 2.5 82.3 1.0 OD1 C:ASP201 2.7 87.7 1.0 OD1 C:ASP197 2.7 71.6 1.0 OD2 C:ASP201 2.9 87.7 1.0 OE2 C:GLU208 3.0 91.5 1.0 OE1 C:GLU208 3.1 91.5 1.0 CG C:ASP201 3.2 87.7 1.0 CG C:ASP199 3.4 82.3 1.0 CD C:GLU208 3.4 91.5 1.0 OD2 C:ASP199 3.5 82.3 1.0 C C:THR203 3.6 89.5 1.0 CG C:ASP197 3.9 71.6 1.0 OD1 C:ASN205 4.2 99.3 1.0 CA C:LEU204 4.3 86.9 1.0 N C:ASN205 4.4 99.3 1.0 N C:LEU204 4.4 86.9 1.0 OG1 C:THR203 4.4 89.5 1.0 CG C:ASN205 4.5 99.3 1.0 OD2 C:ASP197 4.6 71.6 1.0 N C:THR203 4.6 89.5 1.0 CB C:ASP201 4.6 87.7 1.0 CA C:THR203 4.6 89.5 1.0 CB C:ASP199 4.8 82.3 1.0 C C:LEU204 4.8 86.9 1.0 N C:ASP199 4.8 82.3 1.0 ND2 C:ASN205 4.9 99.3 1.0 CG C:GLU208 4.9 91.5 1.0 CB C:ASP197 5.0 71.6 1.0 N C:ASP201 5.0 87.7 1.0

Calcium binding site 4 out of 4 in the Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca605 b:84.4 occ:1.00 OD1 C:ASP319 2.5 87.2 1.0 O C:ALA323 2.5 72.6 1.0 OE1 C:GLU328 2.5 81.1 1.0 OD1 C:ASP321 2.6 85.6 1.0 OD1 C:ASP317 2.8 76.9 1.0 OE2 C:GLU328 2.9 81.1 1.0 CD C:GLU328 3.0 81.1 1.0 OD2 C:ASP319 3.1 87.2 1.0 OD2 C:ASP321 3.1 85.6 1.0 CG C:ASP319 3.1 87.2 1.0 CG C:ASP321 3.2 85.6 1.0 C C:ALA323 3.6 72.6 1.0 CG C:ASP317 4.0 76.9 1.0 N C:SER325 4.0 78.0 1.0 CA C:LEU324 4.3 70.2 1.0 N C:LEU324 4.3 70.2 1.0 CG C:GLU328 4.5 81.1 1.0 OD2 C:ASP317 4.6 76.9 1.0 C C:LEU324 4.6 70.2 1.0 CA C:ALA323 4.6 72.6 1.0 CB C:ASP319 4.6 87.2 1.0 N C:ALA323 4.6 72.6 1.0 CB C:SER325 4.6 78.0 1.0 CB C:ASP321 4.7 85.6 1.0 N C:ASP319 4.8 87.2 1.0 N C:ASP321 4.9 85.6 1.0 CB C:ALA323 4.9 72.6 1.0 CA C:SER325 5.0 78.0 1.0 CA C:ASP317 5.0 76.9 1.0

E.E.Ravitch, E.E.Baltrusaitis, T.P.Perez, K.R.Barrie, A.R.Fenton, E.L.F.Holbaur, R.Dominguez. Complex of Human MIRO1 and TRAK1 Binding Site-2 (L570-R613) To Be Published.