Calcium in PDB 9e9z: Sinv-Weev Fleming in Complex with Vldlr La(1-2)
Enzymatic activity of Sinv-Weev Fleming in Complex with Vldlr La(1-2)
All present enzymatic activity of Sinv-Weev Fleming in Complex with Vldlr La(1-2):
3.4.21.90;
Calcium Binding Sites:
The binding sites of Calcium atom in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
(pdb code 9e9z). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Sinv-Weev Fleming in Complex with Vldlr La(1-2), PDB code: 9e9z:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 1 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Ca201
b:158.4
occ:1.00
|
OD2
|
V:ASP63
|
2.4
|
171.7
|
1.0
|
|
OD1
|
V:ASP57
|
2.4
|
167.0
|
1.0
|
|
O
|
V:ASP55
|
2.5
|
160.4
|
1.0
|
|
OD1
|
V:ASP63
|
2.7
|
171.7
|
1.0
|
|
CG
|
V:ASP63
|
2.8
|
171.7
|
1.0
|
|
O
|
V:TRP50
|
2.9
|
170.8
|
1.0
|
|
OD1
|
V:ASP53
|
3.1
|
167.9
|
1.0
|
|
O
|
V:ASP53
|
3.3
|
167.9
|
1.0
|
|
CG
|
V:ASP53
|
3.4
|
167.9
|
1.0
|
|
OD2
|
V:ASP53
|
3.4
|
167.9
|
1.0
|
|
O
|
V:LYS51
|
3.5
|
171.3
|
1.0
|
|
C
|
V:ASP55
|
3.5
|
160.4
|
1.0
|
|
CA
|
V:GLU56
|
3.5
|
161.2
|
1.0
|
|
C
|
V:TRP50
|
3.6
|
170.8
|
1.0
|
|
CG
|
V:ASP57
|
3.6
|
167.0
|
1.0
|
|
NZ
|
C:LYS227
|
3.7
|
124.3
|
1.0
|
|
N
|
V:GLU56
|
3.9
|
161.2
|
1.0
|
|
N
|
V:ASP53
|
3.9
|
167.9
|
1.0
|
|
C
|
V:LYS51
|
3.9
|
171.3
|
1.0
|
|
C
|
V:GLU56
|
4.2
|
161.2
|
1.0
|
|
C
|
V:ASP53
|
4.2
|
167.9
|
1.0
|
|
N
|
V:LYS51
|
4.3
|
171.3
|
1.0
|
|
CB
|
V:ASP63
|
4.3
|
171.7
|
1.0
|
|
OD2
|
V:ASP57
|
4.3
|
167.0
|
1.0
|
|
CA
|
V:TRP50
|
4.3
|
170.8
|
1.0
|
|
CB
|
V:GLU56
|
4.4
|
161.2
|
1.0
|
|
CA
|
V:LYS51
|
4.4
|
171.3
|
1.0
|
|
CA
|
V:ASP53
|
4.4
|
167.9
|
1.0
|
|
CB
|
V:ASP53
|
4.5
|
167.9
|
1.0
|
|
N
|
V:CYS52
|
4.5
|
173.8
|
1.0
|
|
N
|
V:ASP57
|
4.5
|
167.0
|
1.0
|
|
CB
|
V:TRP50
|
4.5
|
170.8
|
1.0
|
|
CB
|
V:ASP57
|
4.6
|
167.0
|
1.0
|
|
C
|
V:CYS52
|
4.7
|
173.8
|
1.0
|
|
CA
|
V:ASP55
|
4.7
|
160.4
|
1.0
|
|
N
|
V:ASP55
|
4.8
|
160.4
|
1.0
|
|
CA
|
V:CYS52
|
4.8
|
173.8
|
1.0
|
|
O
|
V:GLU56
|
4.8
|
161.2
|
1.0
|
|
Calcium binding site 2 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 2 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Ca202
b:130.4
occ:1.00
|
OE2
|
V:GLU103
|
2.3
|
121.2
|
1.0
|
|
OD2
|
V:ASP96
|
2.3
|
121.1
|
1.0
|
|
O
|
V:ASP94
|
2.4
|
122.0
|
1.0
|
|
OD2
|
V:ASP92
|
2.4
|
124.2
|
1.0
|
|
O
|
V:LYS90
|
2.4
|
114.9
|
1.0
|
|
OD2
|
V:ASP102
|
2.4
|
121.3
|
1.0
|
|
OD1
|
V:ASP92
|
2.6
|
124.2
|
1.0
|
|
CG
|
V:ASP92
|
2.8
|
124.2
|
1.0
|
|
CG
|
V:ASP96
|
3.3
|
121.1
|
1.0
|
|
CD
|
V:GLU103
|
3.3
|
121.2
|
1.0
|
|
NZ
|
H:LYS81
|
3.3
|
126.2
|
1.0
|
|
C
|
V:ASP94
|
3.4
|
122.0
|
1.0
|
|
C
|
V:LYS90
|
3.6
|
114.9
|
1.0
|
|
CG
|
V:ASP102
|
3.6
|
121.3
|
1.0
|
|
CG
|
V:GLU103
|
3.9
|
121.2
|
1.0
|
|
OD1
|
V:ASP96
|
3.9
|
121.1
|
1.0
|
|
N
|
V:ASP92
|
4.0
|
124.2
|
1.0
|
|
CE
|
H:LYS81
|
4.0
|
126.2
|
1.0
|
|
N
|
V:ASP94
|
4.0
|
122.0
|
1.0
|
|
CB
|
V:ASP92
|
4.1
|
124.2
|
1.0
|
|
CB
|
V:ASP96
|
4.2
|
121.1
|
1.0
|
|
CA
|
V:ASP94
|
4.2
|
122.0
|
1.0
|
|
N
|
V:ASP96
|
4.3
|
121.1
|
1.0
|
|
OE1
|
V:GLU103
|
4.3
|
121.2
|
1.0
|
|
N
|
V:PRO95
|
4.3
|
119.1
|
1.0
|
|
CB
|
V:ASP102
|
4.3
|
121.3
|
1.0
|
|
CA
|
V:PRO95
|
4.4
|
119.1
|
1.0
|
|
N
|
V:LYS90
|
4.4
|
114.9
|
1.0
|
|
CA
|
V:LYS90
|
4.4
|
114.9
|
1.0
|
|
CA
|
V:ASP92
|
4.5
|
124.2
|
1.0
|
|
C
|
V:PRO95
|
4.5
|
119.1
|
1.0
|
|
N
|
V:CYS91
|
4.5
|
123.4
|
1.0
|
|
C
|
V:TRP89
|
4.6
|
113.1
|
1.0
|
|
CB
|
V:TRP89
|
4.6
|
113.1
|
1.0
|
|
OD1
|
V:ASP102
|
4.6
|
121.3
|
1.0
|
|
C
|
V:CYS91
|
4.7
|
123.4
|
1.0
|
|
CB
|
V:ASP94
|
4.7
|
122.0
|
1.0
|
|
CA
|
V:CYS91
|
4.7
|
123.4
|
1.0
|
|
N
|
V:GLY93
|
4.8
|
126.8
|
1.0
|
|
C
|
V:ASP92
|
4.8
|
124.2
|
1.0
|
|
O
|
V:ASP102
|
4.9
|
121.3
|
1.0
|
|
O
|
V:TRP89
|
4.9
|
113.1
|
1.0
|
|
CA
|
V:ASP96
|
4.9
|
121.1
|
1.0
|
|
C
|
V:ASP102
|
5.0
|
121.3
|
1.0
|
|
Calcium binding site 3 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 3 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
W:Ca201
b:167.1
occ:1.00
|
OD1
|
W:ASP53
|
2.3
|
156.9
|
1.0
|
|
OD2
|
W:ASP57
|
2.4
|
151.6
|
1.0
|
|
O
|
W:ASP55
|
2.4
|
153.4
|
1.0
|
|
OD1
|
W:ASP63
|
2.4
|
158.2
|
1.0
|
|
OD2
|
W:ASP63
|
2.4
|
158.2
|
1.0
|
|
O
|
W:TRP50
|
2.4
|
156.4
|
1.0
|
|
O
|
W:LYS51
|
2.4
|
154.3
|
1.0
|
|
CG
|
W:ASP63
|
2.7
|
158.2
|
1.0
|
|
C
|
W:LYS51
|
3.1
|
154.3
|
1.0
|
|
CG
|
W:ASP53
|
3.1
|
156.9
|
1.0
|
|
CA
|
W:LYS51
|
3.3
|
154.3
|
1.0
|
|
CG
|
W:ASP57
|
3.3
|
151.6
|
1.0
|
|
C
|
W:TRP50
|
3.3
|
156.4
|
1.0
|
|
C
|
W:ASP55
|
3.4
|
153.4
|
1.0
|
|
OD2
|
W:ASP53
|
3.6
|
156.9
|
1.0
|
|
OG
|
W:SER62
|
3.7
|
156.5
|
1.0
|
|
N
|
W:LYS51
|
3.7
|
154.3
|
1.0
|
|
N
|
W:ASP55
|
3.8
|
153.4
|
1.0
|
|
N
|
W:ASP53
|
3.8
|
156.9
|
1.0
|
|
OD1
|
W:ASP57
|
4.0
|
151.6
|
1.0
|
|
N
|
W:ASP57
|
4.0
|
151.6
|
1.0
|
|
CA
|
W:ASP55
|
4.1
|
153.4
|
1.0
|
|
CB
|
W:ASP63
|
4.1
|
158.2
|
1.0
|
|
CB
|
W:ASP53
|
4.2
|
156.9
|
1.0
|
|
N
|
W:GLY54
|
4.2
|
156.7
|
1.0
|
|
N
|
W:CYS52
|
4.2
|
158.4
|
1.0
|
|
N
|
W:GLU56
|
4.4
|
149.4
|
1.0
|
|
CB
|
W:ASP57
|
4.4
|
151.6
|
1.0
|
|
CA
|
W:ASP53
|
4.4
|
156.9
|
1.0
|
|
CA
|
W:GLU56
|
4.5
|
149.4
|
1.0
|
|
N
|
W:ASP63
|
4.6
|
158.2
|
1.0
|
|
CA
|
W:TRP50
|
4.6
|
156.4
|
1.0
|
|
CB
|
W:ASP55
|
4.6
|
153.4
|
1.0
|
|
C
|
W:ASP53
|
4.6
|
156.9
|
1.0
|
|
CB
|
W:TRP50
|
4.7
|
156.4
|
1.0
|
|
C
|
W:GLU56
|
4.7
|
149.4
|
1.0
|
|
CB
|
W:LYS51
|
4.7
|
154.3
|
1.0
|
|
CA
|
W:ASP63
|
4.7
|
158.2
|
1.0
|
|
C
|
W:GLY54
|
4.8
|
156.7
|
1.0
|
|
C
|
W:CYS52
|
4.8
|
158.4
|
1.0
|
|
CA
|
W:ASP57
|
4.8
|
151.6
|
1.0
|
|
CA
|
W:CYS52
|
4.9
|
158.4
|
1.0
|
|
CB
|
W:SER62
|
5.0
|
156.5
|
1.0
|
|
Calcium binding site 4 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 4 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
W:Ca202
b:93.2
occ:1.00
|
OE2
|
W:GLU103
|
2.3
|
125.8
|
1.0
|
|
OD2
|
W:ASP102
|
2.3
|
121.6
|
1.0
|
|
OD2
|
W:ASP96
|
2.4
|
116.6
|
1.0
|
|
OD2
|
W:ASP92
|
2.4
|
117.8
|
1.0
|
|
O
|
W:ASP94
|
2.4
|
129.1
|
1.0
|
|
O
|
W:TRP89
|
2.5
|
108.4
|
1.0
|
|
O
|
W:ASP102
|
2.9
|
121.6
|
1.0
|
|
CG
|
W:ASP92
|
3.2
|
117.8
|
1.0
|
|
CD
|
W:GLU103
|
3.3
|
125.8
|
1.0
|
|
CG
|
W:ASP102
|
3.4
|
121.6
|
1.0
|
|
NZ
|
D:LYS81
|
3.5
|
110.2
|
1.0
|
|
CG
|
W:ASP96
|
3.5
|
116.6
|
1.0
|
|
C
|
W:ASP94
|
3.6
|
129.1
|
1.0
|
|
OD1
|
W:ASP92
|
3.6
|
117.8
|
1.0
|
|
C
|
W:TRP89
|
3.7
|
108.4
|
1.0
|
|
CG
|
W:GLU103
|
3.7
|
125.8
|
1.0
|
|
CB
|
W:ASP102
|
3.7
|
121.6
|
1.0
|
|
C
|
W:ASP102
|
3.7
|
121.6
|
1.0
|
|
CB
|
W:TRP89
|
4.0
|
108.4
|
1.0
|
|
CA
|
W:TRP89
|
4.2
|
108.4
|
1.0
|
|
OD1
|
W:ASP96
|
4.3
|
116.6
|
1.0
|
|
CA
|
W:PRO95
|
4.3
|
120.8
|
1.0
|
|
N
|
W:ASP92
|
4.3
|
117.8
|
1.0
|
|
OE1
|
W:GLU103
|
4.4
|
125.8
|
1.0
|
|
C
|
W:PRO95
|
4.4
|
120.8
|
1.0
|
|
N
|
W:ASP96
|
4.4
|
116.6
|
1.0
|
|
CA
|
W:ASP102
|
4.4
|
121.6
|
1.0
|
|
N
|
W:PRO95
|
4.4
|
120.8
|
1.0
|
|
CB
|
W:ASP96
|
4.4
|
116.6
|
1.0
|
|
N
|
W:ASP94
|
4.5
|
129.1
|
1.0
|
|
CB
|
W:ASP92
|
4.5
|
117.8
|
1.0
|
|
OD1
|
W:ASP102
|
4.5
|
121.6
|
1.0
|
|
N
|
W:GLU103
|
4.6
|
125.8
|
1.0
|
|
CA
|
W:ASP94
|
4.6
|
129.1
|
1.0
|
|
CE
|
D:LYS81
|
4.8
|
110.2
|
1.0
|
|
N
|
W:LYS90
|
4.8
|
112.3
|
1.0
|
|
C
|
W:CYS91
|
4.9
|
120.8
|
1.0
|
|
CA
|
W:ASP92
|
4.9
|
117.8
|
1.0
|
|
N
|
W:CYS91
|
4.9
|
120.8
|
1.0
|
|
CB
|
W:GLU103
|
4.9
|
125.8
|
1.0
|
|
OD1
|
W:ASP94
|
5.0
|
129.1
|
1.0
|
|
C
|
W:LYS90
|
5.0
|
112.3
|
1.0
|
|
CA
|
W:CYS91
|
5.0
|
120.8
|
1.0
|
|
Calcium binding site 5 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 5 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Ca201
b:161.5
occ:1.00
|
O
|
X:TRP50
|
2.1
|
155.2
|
1.0
|
|
OD1
|
X:ASP53
|
2.2
|
156.8
|
1.0
|
|
OD1
|
X:ASP57
|
2.2
|
153.8
|
1.0
|
|
OD2
|
X:ASP63
|
2.3
|
153.5
|
1.0
|
|
OD1
|
X:ASP63
|
2.4
|
153.5
|
1.0
|
|
O
|
X:ASP55
|
2.4
|
153.7
|
1.0
|
|
OD2
|
X:ASP53
|
2.4
|
156.8
|
1.0
|
|
CG
|
X:ASP53
|
2.5
|
156.8
|
1.0
|
|
CG
|
X:ASP63
|
2.7
|
153.5
|
1.0
|
|
C
|
X:TRP50
|
3.2
|
155.2
|
1.0
|
|
C
|
X:ASP55
|
3.3
|
153.7
|
1.0
|
|
CB
|
X:TRP50
|
3.4
|
155.2
|
1.0
|
|
CG
|
X:ASP57
|
3.4
|
153.8
|
1.0
|
|
CA
|
X:TRP50
|
3.6
|
155.2
|
1.0
|
|
OG
|
X:SER62
|
3.7
|
148.3
|
1.0
|
|
N
|
X:ASP55
|
3.8
|
153.7
|
1.0
|
|
CB
|
X:ASP53
|
3.9
|
156.8
|
1.0
|
|
CA
|
X:ASP55
|
4.0
|
153.7
|
1.0
|
|
N
|
X:ASP57
|
4.0
|
153.8
|
1.0
|
|
N
|
X:ASP53
|
4.1
|
156.8
|
1.0
|
|
OD2
|
X:ASP57
|
4.1
|
153.8
|
1.0
|
|
CB
|
X:ASP55
|
4.2
|
153.7
|
1.0
|
|
CB
|
X:ASP63
|
4.2
|
153.5
|
1.0
|
|
N
|
X:GLU56
|
4.2
|
153.4
|
1.0
|
|
CA
|
X:GLU56
|
4.4
|
153.4
|
1.0
|
|
N
|
X:LYS51
|
4.4
|
153.3
|
1.0
|
|
N
|
X:GLY54
|
4.4
|
154.1
|
1.0
|
|
CA
|
X:ASP53
|
4.5
|
156.8
|
1.0
|
|
CB
|
X:ASP57
|
4.5
|
153.8
|
1.0
|
|
CG
|
X:TRP50
|
4.6
|
155.2
|
1.0
|
|
C
|
X:GLU56
|
4.7
|
153.4
|
1.0
|
|
C
|
X:LYS51
|
4.7
|
153.3
|
1.0
|
|
C
|
X:ASP53
|
4.7
|
156.8
|
1.0
|
|
N
|
X:ASP63
|
4.8
|
153.5
|
1.0
|
|
CA
|
X:LYS51
|
4.8
|
153.3
|
1.0
|
|
CA
|
X:ASP57
|
4.9
|
153.8
|
1.0
|
|
C
|
X:GLY54
|
4.9
|
154.1
|
1.0
|
|
N
|
X:CYS52
|
4.9
|
153.8
|
1.0
|
|
O
|
X:LYS51
|
4.9
|
153.3
|
1.0
|
|
CB
|
X:SER62
|
5.0
|
148.3
|
1.0
|
|
Calcium binding site 6 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 6 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Ca202
b:101.6
occ:1.00
|
OE2
|
X:GLU103
|
2.3
|
103.9
|
1.0
|
|
OD2
|
X:ASP102
|
2.3
|
106.1
|
1.0
|
|
OD2
|
X:ASP92
|
2.3
|
102.6
|
1.0
|
|
OD2
|
X:ASP96
|
2.4
|
103.0
|
1.0
|
|
O
|
X:ASP94
|
2.4
|
97.2
|
1.0
|
|
O
|
X:TRP89
|
2.6
|
102.2
|
1.0
|
|
CG
|
X:ASP92
|
3.0
|
102.6
|
1.0
|
|
NZ
|
K:LYS81
|
3.2
|
98.8
|
1.0
|
|
OD1
|
X:ASP92
|
3.3
|
102.6
|
1.0
|
|
CD
|
X:GLU103
|
3.3
|
103.9
|
1.0
|
|
CG
|
X:ASP96
|
3.4
|
103.0
|
1.0
|
|
CG
|
X:ASP102
|
3.5
|
106.1
|
1.0
|
|
C
|
X:ASP94
|
3.5
|
97.2
|
1.0
|
|
C
|
X:TRP89
|
3.7
|
102.2
|
1.0
|
|
CB
|
X:TRP89
|
3.7
|
102.2
|
1.0
|
|
CG
|
X:GLU103
|
3.8
|
103.9
|
1.0
|
|
O
|
X:ASP102
|
3.9
|
106.1
|
1.0
|
|
N
|
X:ASP96
|
4.0
|
103.0
|
1.0
|
|
OD1
|
X:ASP96
|
4.0
|
103.0
|
1.0
|
|
CA
|
X:TRP89
|
4.1
|
102.2
|
1.0
|
|
CA
|
X:PRO95
|
4.2
|
99.6
|
1.0
|
|
CB
|
X:ASP102
|
4.2
|
106.1
|
1.0
|
|
N
|
X:PRO95
|
4.2
|
99.6
|
1.0
|
|
CB
|
X:ASP96
|
4.3
|
103.0
|
1.0
|
|
CB
|
X:ASP92
|
4.3
|
102.6
|
1.0
|
|
OE1
|
X:GLU103
|
4.4
|
103.9
|
1.0
|
|
N
|
X:ASP92
|
4.4
|
102.6
|
1.0
|
|
OD1
|
X:ASP102
|
4.5
|
106.1
|
1.0
|
|
N
|
X:ASP94
|
4.5
|
97.2
|
1.0
|
|
CG
|
X:TRP89
|
4.5
|
102.2
|
1.0
|
|
CA
|
X:ASP94
|
4.5
|
97.2
|
1.0
|
|
C
|
X:PRO95
|
4.5
|
99.6
|
1.0
|
|
CE
|
K:LYS81
|
4.6
|
98.8
|
1.0
|
|
C
|
X:ASP102
|
4.7
|
106.1
|
1.0
|
|
CA
|
X:ASP96
|
4.8
|
103.0
|
1.0
|
|
N
|
X:LYS90
|
4.9
|
106.4
|
1.0
|
|
CA
|
X:ASP92
|
4.9
|
102.6
|
1.0
|
|
Calcium binding site 7 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 7 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:Ca201
b:120.2
occ:1.00
|
OD1
|
Y:ASP53
|
2.3
|
155.6
|
1.0
|
|
OD2
|
Y:ASP57
|
2.3
|
157.6
|
1.0
|
|
OD2
|
Y:ASP63
|
2.3
|
155.2
|
1.0
|
|
O
|
Y:ASP55
|
2.4
|
157.5
|
1.0
|
|
O
|
Y:TRP50
|
2.4
|
152.3
|
1.0
|
|
OD2
|
Y:ASP53
|
2.7
|
155.6
|
1.0
|
|
CG
|
Y:ASP53
|
2.8
|
155.6
|
1.0
|
|
CG
|
Y:ASP63
|
3.1
|
155.2
|
1.0
|
|
CG
|
Y:ASP57
|
3.1
|
157.6
|
1.0
|
|
C
|
Y:TRP50
|
3.3
|
152.3
|
1.0
|
|
CB
|
Y:TRP50
|
3.3
|
152.3
|
1.0
|
|
NZ
|
A:LYS227
|
3.4
|
119.9
|
1.0
|
|
C
|
Y:ASP55
|
3.4
|
157.5
|
1.0
|
|
CB
|
Y:ASP55
|
3.4
|
157.5
|
1.0
|
|
OD1
|
Y:ASP57
|
3.5
|
157.6
|
1.0
|
|
CA
|
Y:TRP50
|
3.8
|
152.3
|
1.0
|
|
CA
|
Y:ASP55
|
3.8
|
157.5
|
1.0
|
|
OD1
|
Y:ASP63
|
3.8
|
155.2
|
1.0
|
|
N
|
Y:ASP55
|
3.9
|
157.5
|
1.0
|
|
CB
|
Y:ASP63
|
3.9
|
155.2
|
1.0
|
|
CB
|
Y:ASP53
|
4.2
|
155.6
|
1.0
|
|
N
|
Y:LYS51
|
4.2
|
157.9
|
1.0
|
|
CB
|
Y:ASP57
|
4.3
|
157.6
|
1.0
|
|
CG
|
Y:ASP55
|
4.3
|
157.5
|
1.0
|
|
OD2
|
Y:ASP55
|
4.4
|
157.5
|
1.0
|
|
CG
|
Y:TRP50
|
4.5
|
152.3
|
1.0
|
|
CA
|
Y:LYS51
|
4.5
|
157.9
|
1.0
|
|
N
|
Y:ASP57
|
4.5
|
157.6
|
1.0
|
|
N
|
Y:GLU56
|
4.6
|
164.2
|
1.0
|
|
N
|
Y:ASP53
|
4.6
|
155.6
|
1.0
|
|
O
|
Y:LYS51
|
4.7
|
157.9
|
1.0
|
|
CE
|
A:LYS227
|
4.7
|
119.9
|
1.0
|
|
C
|
Y:LYS51
|
4.7
|
157.9
|
1.0
|
|
CA
|
Y:ASP53
|
4.8
|
155.6
|
1.0
|
|
N
|
Y:GLY54
|
4.9
|
152.5
|
1.0
|
|
C
|
Y:ASP53
|
5.0
|
155.6
|
1.0
|
|
Calcium binding site 8 out
of 8 in 9e9z
Go back to
Calcium Binding Sites List in 9e9z
Calcium binding site 8 out
of 8 in the Sinv-Weev Fleming in Complex with Vldlr La(1-2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Sinv-Weev Fleming in Complex with Vldlr La(1-2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:Ca202
b:115.9
occ:1.00
|
O
|
Y:TRP89
|
2.1
|
111.2
|
1.0
|
|
OD1
|
Y:ASP96
|
2.3
|
117.5
|
1.0
|
|
OD1
|
Y:ASP92
|
2.3
|
103.6
|
1.0
|
|
O
|
Y:ASP94
|
2.3
|
116.8
|
1.0
|
|
OD2
|
Y:ASP92
|
2.3
|
103.6
|
1.0
|
|
OD2
|
Y:ASP102
|
2.3
|
119.6
|
1.0
|
|
OD2
|
Y:ASP96
|
2.4
|
117.5
|
1.0
|
|
CG
|
Y:ASP96
|
2.5
|
117.5
|
1.0
|
|
CG
|
Y:ASP92
|
2.5
|
103.6
|
1.0
|
|
C
|
Y:TRP89
|
3.2
|
111.2
|
1.0
|
|
CG
|
Y:ASP102
|
3.3
|
119.6
|
1.0
|
|
C
|
Y:ASP94
|
3.5
|
116.8
|
1.0
|
|
CB
|
Y:TRP89
|
3.6
|
111.2
|
1.0
|
|
N
|
Y:ASP96
|
3.7
|
117.5
|
1.0
|
|
CB
|
Y:ASP102
|
3.8
|
119.6
|
1.0
|
|
CB
|
Y:ASP96
|
3.8
|
117.5
|
1.0
|
|
CB
|
Y:ASP92
|
3.9
|
103.6
|
1.0
|
|
CA
|
Y:TRP89
|
3.9
|
111.2
|
1.0
|
|
N
|
Y:LYS90
|
4.2
|
119.1
|
1.0
|
|
N
|
Y:ASP94
|
4.2
|
116.8
|
1.0
|
|
CA
|
Y:ASP96
|
4.2
|
117.5
|
1.0
|
|
C
|
Y:PRO95
|
4.3
|
113.7
|
1.0
|
|
CB
|
B:ALA119
|
4.4
|
158.5
|
1.0
|
|
OD1
|
Y:ASP102
|
4.4
|
119.6
|
1.0
|
|
CA
|
Y:ASP94
|
4.4
|
116.8
|
1.0
|
|
N
|
Y:ASP92
|
4.4
|
103.6
|
1.0
|
|
CA
|
Y:LYS90
|
4.5
|
119.1
|
1.0
|
|
CA
|
Y:PRO95
|
4.5
|
113.7
|
1.0
|
|
N
|
Y:PRO95
|
4.5
|
113.7
|
1.0
|
|
CB
|
Y:ASP94
|
4.7
|
116.8
|
1.0
|
|
CA
|
Y:ASP92
|
4.7
|
103.6
|
1.0
|
|
N
|
Y:GLY93
|
4.8
|
107.9
|
1.0
|
|
CG
|
Y:TRP89
|
4.8
|
111.2
|
1.0
|
|
N
|
Y:CYS91
|
4.8
|
119.4
|
1.0
|
|
O
|
Y:ASP102
|
4.9
|
119.6
|
1.0
|
|
C
|
Y:LYS90
|
4.9
|
119.1
|
1.0
|
|
Reference:
S.Raju,
S.Palakurty,
A.Sariol,
N.Wagoner,
L.J.Adams,
S.Hui,
W.B.Klimstra,
D.H.Fremont,
M.S.Diamond.
Structural Basis For Plasticity in Receptor Engagement By An Encephalitic Alphavirus. Cell 2025.
ISSN: ISSN 1097-4172
PubMed: 40187344
DOI: 10.1016/J.CELL.2025.02.036
Page generated: Thu Jul 10 09:27:38 2025
|
