Calcium in PDB 9egm: Human BEST1 Bound to Gaba in An Open State
Other elements in 9egm:
The structure of Human BEST1 Bound to Gaba in An Open State also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Human BEST1 Bound to Gaba in An Open State
(pdb code 9egm). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the
Human BEST1 Bound to Gaba in An Open State, PDB code: 9egm:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
Calcium binding site 1 out
of 5 in 9egm
Go back to
Calcium Binding Sites List in 9egm
Calcium binding site 1 out
of 5 in the Human BEST1 Bound to Gaba in An Open State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Human BEST1 Bound to Gaba in An Open State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:7.4
occ:1.00
|
O
|
A:ASN296
|
2.4
|
6.5
|
1.0
|
|
O
|
B:ALA10
|
2.5
|
11.4
|
1.0
|
|
O
|
A:GLN293
|
2.5
|
9.3
|
1.0
|
|
OD2
|
A:ASP301
|
2.6
|
6.9
|
1.0
|
|
OD2
|
A:ASP304
|
2.6
|
6.3
|
1.0
|
|
O
|
A:HOH601
|
2.8
|
7.5
|
1.0
|
|
OD1
|
A:ASP304
|
2.8
|
9.8
|
1.0
|
|
CG
|
A:ASP304
|
3.1
|
5.0
|
1.0
|
|
C
|
A:ASN296
|
3.5
|
4.8
|
1.0
|
|
C
|
A:GLN293
|
3.5
|
7.5
|
1.0
|
|
CG
|
A:ASP301
|
3.5
|
11.2
|
1.0
|
|
C
|
B:ALA10
|
3.6
|
10.8
|
1.0
|
|
CA
|
A:GLN293
|
4.0
|
7.8
|
1.0
|
|
CB
|
A:ASP301
|
4.1
|
10.7
|
1.0
|
|
CA
|
B:ASN11
|
4.3
|
11.1
|
1.0
|
|
N
|
B:ASN11
|
4.3
|
15.6
|
1.0
|
|
CA
|
A:PRO297
|
4.3
|
4.1
|
1.0
|
|
N
|
A:PRO297
|
4.3
|
5.0
|
1.0
|
|
O
|
B:VAL9
|
4.4
|
11.4
|
1.0
|
|
CA
|
A:ASN296
|
4.4
|
5.5
|
1.0
|
|
O
|
A:GLU292
|
4.4
|
15.6
|
1.0
|
|
N
|
A:GLY299
|
4.4
|
4.6
|
1.0
|
|
OD1
|
A:ASP301
|
4.5
|
20.8
|
1.0
|
|
N
|
A:ASN296
|
4.5
|
5.4
|
1.0
|
|
OE1
|
A:GLN293
|
4.5
|
13.0
|
1.0
|
|
CB
|
A:ASN296
|
4.5
|
4.4
|
1.0
|
|
CA
|
B:ALA10
|
4.6
|
10.7
|
1.0
|
|
CB
|
A:ASP304
|
4.6
|
5.7
|
1.0
|
|
CG
|
A:GLN293
|
4.6
|
9.3
|
1.0
|
|
CA
|
A:GLY299
|
4.6
|
6.3
|
1.0
|
|
N
|
A:LEU294
|
4.6
|
6.4
|
1.0
|
|
N
|
B:ALA12
|
4.8
|
21.5
|
1.0
|
|
C
|
B:ASN11
|
4.8
|
15.1
|
1.0
|
|
C
|
A:PRO297
|
4.8
|
3.5
|
1.0
|
|
N
|
A:ASP301
|
4.9
|
10.6
|
1.0
|
|
CB
|
A:GLN293
|
4.9
|
9.2
|
1.0
|
|
CD
|
A:GLN293
|
5.0
|
14.1
|
1.0
|
|
Calcium binding site 2 out
of 5 in 9egm
Go back to
Calcium Binding Sites List in 9egm
Calcium binding site 2 out
of 5 in the Human BEST1 Bound to Gaba in An Open State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Human BEST1 Bound to Gaba in An Open State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:8.2
occ:1.00
|
O
|
B:ASN296
|
2.4
|
6.7
|
1.0
|
|
O
|
C:ALA10
|
2.5
|
10.9
|
1.0
|
|
O
|
B:GLN293
|
2.5
|
8.8
|
1.0
|
|
OD2
|
B:ASP304
|
2.6
|
6.8
|
1.0
|
|
OD2
|
B:ASP301
|
2.6
|
7.6
|
1.0
|
|
O
|
B:HOH601
|
2.8
|
8.2
|
1.0
|
|
OD1
|
B:ASP304
|
2.8
|
9.3
|
1.0
|
|
CG
|
B:ASP304
|
3.1
|
5.8
|
1.0
|
|
C
|
B:ASN296
|
3.5
|
5.4
|
1.0
|
|
C
|
B:GLN293
|
3.5
|
7.4
|
1.0
|
|
CG
|
B:ASP301
|
3.6
|
12.1
|
1.0
|
|
C
|
C:ALA10
|
3.6
|
10.0
|
1.0
|
|
CA
|
B:GLN293
|
4.0
|
8.1
|
1.0
|
|
CB
|
B:ASP301
|
4.1
|
11.9
|
1.0
|
|
CA
|
C:ASN11
|
4.3
|
12.4
|
1.0
|
|
N
|
C:ASN11
|
4.3
|
14.0
|
1.0
|
|
CA
|
B:PRO297
|
4.3
|
4.8
|
1.0
|
|
N
|
B:PRO297
|
4.3
|
5.1
|
1.0
|
|
CA
|
B:ASN296
|
4.4
|
6.4
|
1.0
|
|
O
|
C:VAL9
|
4.4
|
11.7
|
1.0
|
|
O
|
B:GLU292
|
4.4
|
16.1
|
1.0
|
|
N
|
B:GLY299
|
4.5
|
5.2
|
1.0
|
|
OD1
|
B:ASP301
|
4.5
|
21.3
|
1.0
|
|
N
|
B:ASN296
|
4.5
|
6.1
|
1.0
|
|
CB
|
B:ASN296
|
4.5
|
4.3
|
1.0
|
|
OE1
|
B:GLN293
|
4.5
|
13.4
|
1.0
|
|
CA
|
C:ALA10
|
4.6
|
9.6
|
1.0
|
|
CB
|
B:ASP304
|
4.6
|
5.9
|
1.0
|
|
CG
|
B:GLN293
|
4.6
|
8.9
|
1.0
|
|
N
|
B:LEU294
|
4.6
|
6.9
|
1.0
|
|
CA
|
B:GLY299
|
4.6
|
6.2
|
1.0
|
|
N
|
C:ALA12
|
4.8
|
20.7
|
1.0
|
|
C
|
B:PRO297
|
4.8
|
3.9
|
1.0
|
|
C
|
C:ASN11
|
4.8
|
15.5
|
1.0
|
|
N
|
B:ASP301
|
4.9
|
10.9
|
1.0
|
|
CB
|
B:GLN293
|
4.9
|
8.8
|
1.0
|
|
CA
|
B:LEU294
|
5.0
|
6.9
|
1.0
|
|
Calcium binding site 3 out
of 5 in 9egm
Go back to
Calcium Binding Sites List in 9egm
Calcium binding site 3 out
of 5 in the Human BEST1 Bound to Gaba in An Open State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Human BEST1 Bound to Gaba in An Open State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca503
b:6.7
occ:1.00
|
O
|
C:ASN296
|
2.4
|
6.7
|
1.0
|
|
O
|
D:ALA10
|
2.5
|
12.7
|
1.0
|
|
OD2
|
C:ASP304
|
2.5
|
6.5
|
1.0
|
|
O
|
C:GLN293
|
2.5
|
9.8
|
1.0
|
|
OD2
|
C:ASP301
|
2.6
|
7.7
|
1.0
|
|
OD1
|
C:ASP304
|
2.8
|
8.8
|
1.0
|
|
O
|
C:HOH602
|
2.8
|
9.0
|
1.0
|
|
CG
|
C:ASP304
|
3.0
|
5.4
|
1.0
|
|
C
|
C:ASN296
|
3.5
|
5.0
|
1.0
|
|
CG
|
C:ASP301
|
3.5
|
11.9
|
1.0
|
|
C
|
C:GLN293
|
3.6
|
7.5
|
1.0
|
|
C
|
D:ALA10
|
3.6
|
10.7
|
1.0
|
|
CA
|
C:GLN293
|
4.0
|
7.7
|
1.0
|
|
CB
|
C:ASP301
|
4.1
|
11.5
|
1.0
|
|
CA
|
D:ASN11
|
4.3
|
11.6
|
1.0
|
|
CA
|
C:PRO297
|
4.3
|
4.6
|
1.0
|
|
N
|
D:ASN11
|
4.3
|
14.4
|
1.0
|
|
N
|
C:PRO297
|
4.3
|
4.5
|
1.0
|
|
CA
|
C:ASN296
|
4.4
|
6.4
|
1.0
|
|
O
|
D:VAL9
|
4.4
|
11.9
|
1.0
|
|
N
|
C:GLY299
|
4.4
|
4.1
|
1.0
|
|
O
|
C:GLU292
|
4.5
|
17.9
|
1.0
|
|
OD1
|
C:ASP301
|
4.5
|
20.9
|
1.0
|
|
OE1
|
C:GLN293
|
4.5
|
11.7
|
1.0
|
|
CB
|
C:ASP304
|
4.5
|
5.4
|
1.0
|
|
N
|
C:ASN296
|
4.5
|
5.2
|
1.0
|
|
CB
|
C:ASN296
|
4.6
|
4.5
|
1.0
|
|
CA
|
D:ALA10
|
4.6
|
9.6
|
1.0
|
|
CG
|
C:GLN293
|
4.6
|
9.9
|
1.0
|
|
CA
|
C:GLY299
|
4.6
|
6.5
|
1.0
|
|
N
|
C:LEU294
|
4.7
|
7.1
|
1.0
|
|
C
|
C:PRO297
|
4.8
|
3.9
|
1.0
|
|
N
|
D:ALA12
|
4.8
|
20.9
|
1.0
|
|
C
|
D:ASN11
|
4.8
|
14.5
|
1.0
|
|
N
|
C:ASP301
|
4.8
|
11.5
|
1.0
|
|
CB
|
C:GLN293
|
4.9
|
9.4
|
1.0
|
|
CD
|
C:GLN293
|
5.0
|
14.3
|
1.0
|
|
Calcium binding site 4 out
of 5 in 9egm
Go back to
Calcium Binding Sites List in 9egm
Calcium binding site 4 out
of 5 in the Human BEST1 Bound to Gaba in An Open State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Human BEST1 Bound to Gaba in An Open State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca503
b:5.1
occ:1.00
|
O
|
D:ASN296
|
2.4
|
5.6
|
1.0
|
|
O
|
E:ALA10
|
2.4
|
8.8
|
1.0
|
|
OD2
|
D:ASP304
|
2.6
|
5.5
|
1.0
|
|
OD2
|
D:ASP301
|
2.6
|
6.4
|
1.0
|
|
O
|
D:GLN293
|
2.6
|
8.7
|
1.0
|
|
O
|
D:HOH601
|
2.7
|
7.7
|
1.0
|
|
OD1
|
D:ASP304
|
2.9
|
8.8
|
1.0
|
|
CG
|
D:ASP304
|
3.1
|
5.3
|
1.0
|
|
C
|
E:ALA10
|
3.5
|
8.0
|
1.0
|
|
C
|
D:ASN296
|
3.5
|
4.9
|
1.0
|
|
CG
|
D:ASP301
|
3.6
|
11.3
|
1.0
|
|
C
|
D:GLN293
|
3.6
|
6.9
|
1.0
|
|
CA
|
D:GLN293
|
4.1
|
7.3
|
1.0
|
|
CB
|
D:ASP301
|
4.1
|
10.3
|
1.0
|
|
CA
|
E:ASN11
|
4.2
|
11.8
|
1.0
|
|
N
|
E:ASN11
|
4.2
|
11.8
|
1.0
|
|
O
|
E:VAL9
|
4.3
|
10.7
|
1.0
|
|
N
|
D:PRO297
|
4.4
|
4.8
|
1.0
|
|
CA
|
D:PRO297
|
4.4
|
4.5
|
1.0
|
|
CA
|
D:ASN296
|
4.4
|
6.2
|
1.0
|
|
O
|
D:GLU292
|
4.4
|
16.6
|
1.0
|
|
N
|
D:GLY299
|
4.4
|
4.7
|
1.0
|
|
CA
|
E:ALA10
|
4.5
|
9.6
|
1.0
|
|
OD1
|
D:ASP301
|
4.5
|
19.6
|
1.0
|
|
CB
|
D:ASN296
|
4.5
|
3.9
|
1.0
|
|
N
|
D:ASN296
|
4.5
|
6.1
|
1.0
|
|
CA
|
D:GLY299
|
4.6
|
6.3
|
1.0
|
|
OE1
|
D:GLN293
|
4.6
|
11.2
|
1.0
|
|
CB
|
D:ASP304
|
4.6
|
5.7
|
1.0
|
|
CG
|
D:GLN293
|
4.6
|
8.8
|
1.0
|
|
N
|
D:LEU294
|
4.7
|
6.4
|
1.0
|
|
N
|
E:ALA12
|
4.7
|
20.6
|
1.0
|
|
C
|
E:ASN11
|
4.7
|
14.4
|
1.0
|
|
C
|
D:PRO297
|
4.8
|
3.6
|
1.0
|
|
N
|
D:ASP301
|
4.9
|
11.0
|
1.0
|
|
CB
|
D:GLN293
|
5.0
|
7.9
|
1.0
|
|
OD1
|
E:ASN11
|
5.0
|
14.6
|
1.0
|
|
Calcium binding site 5 out
of 5 in 9egm
Go back to
Calcium Binding Sites List in 9egm
Calcium binding site 5 out
of 5 in the Human BEST1 Bound to Gaba in An Open State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Human BEST1 Bound to Gaba in An Open State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca501
b:6.9
occ:1.00
|
O
|
E:ASN296
|
2.4
|
6.9
|
1.0
|
|
O
|
A:ALA10
|
2.5
|
11.5
|
1.0
|
|
O
|
E:GLN293
|
2.5
|
8.4
|
1.0
|
|
OD2
|
E:ASP304
|
2.6
|
6.4
|
1.0
|
|
OD2
|
E:ASP301
|
2.6
|
6.2
|
1.0
|
|
O
|
E:HOH601
|
2.8
|
8.7
|
1.0
|
|
OD1
|
E:ASP304
|
2.9
|
8.0
|
1.0
|
|
CG
|
E:ASP304
|
3.1
|
5.5
|
1.0
|
|
C
|
E:ASN296
|
3.5
|
5.8
|
1.0
|
|
C
|
A:ALA10
|
3.5
|
10.7
|
1.0
|
|
CG
|
E:ASP301
|
3.5
|
12.3
|
1.0
|
|
C
|
E:GLN293
|
3.6
|
6.8
|
1.0
|
|
CA
|
E:GLN293
|
4.0
|
8.0
|
1.0
|
|
CB
|
E:ASP301
|
4.1
|
12.2
|
1.0
|
|
CA
|
A:ASN11
|
4.2
|
12.3
|
1.0
|
|
N
|
A:ASN11
|
4.3
|
14.8
|
1.0
|
|
CA
|
E:PRO297
|
4.3
|
4.9
|
1.0
|
|
N
|
E:PRO297
|
4.3
|
5.2
|
1.0
|
|
O
|
A:VAL9
|
4.4
|
11.9
|
1.0
|
|
CA
|
E:ASN296
|
4.4
|
6.4
|
1.0
|
|
O
|
E:GLU292
|
4.4
|
16.1
|
1.0
|
|
N
|
E:GLY299
|
4.4
|
4.5
|
1.0
|
|
OD1
|
E:ASP301
|
4.5
|
23.6
|
1.0
|
|
N
|
E:ASN296
|
4.5
|
6.2
|
1.0
|
|
CB
|
E:ASN296
|
4.5
|
4.6
|
1.0
|
|
CA
|
A:ALA10
|
4.5
|
9.3
|
1.0
|
|
OE1
|
E:GLN293
|
4.5
|
11.6
|
1.0
|
|
CB
|
E:ASP304
|
4.6
|
5.8
|
1.0
|
|
CG
|
E:GLN293
|
4.6
|
10.8
|
1.0
|
|
CA
|
E:GLY299
|
4.6
|
6.8
|
1.0
|
|
N
|
E:LEU294
|
4.7
|
6.2
|
1.0
|
|
N
|
A:ALA12
|
4.8
|
22.1
|
1.0
|
|
C
|
A:ASN11
|
4.8
|
15.8
|
1.0
|
|
C
|
E:PRO297
|
4.8
|
3.8
|
1.0
|
|
N
|
E:ASP301
|
4.9
|
12.2
|
1.0
|
|
CB
|
E:GLN293
|
4.9
|
9.8
|
1.0
|
|
Reference:
S.Pant,
S.W.Tam,
S.B.Long.
The Pentameric Chloride Channel BEST1 Is Activated By Extracellular Gaba To Be Published.
Page generated: Thu Jul 10 09:29:55 2025
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