Calcium in PDB 9hej: Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex

The structure of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Calcium atom in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex (pdb code 9hej). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex, PDB code: 9hej:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1203 b:58.3 occ:1.00 OE2 A:GLU252 2.3 70.2 1.0 OD1 A:ASP186 2.3 75.3 1.0 OD1 A:ASP185 3.0 65.5 1.0 CD A:GLU252 3.5 67.4 1.0 CG A:ASP186 3.5 76.1 1.0 CG A:ASP185 4.0 61.2 1.0 OD2 A:ASP186 4.3 75.7 1.0 OE1 A:GLU252 4.3 66.8 1.0 N A:ASP186 4.3 60.8 1.0 CG A:GLU252 4.3 61.3 1.0 CA A:ASP186 4.4 62.2 1.0 OD2 A:ASP185 4.4 62.7 1.0 NZ F:LYS262 4.4 61.6 1.0 CB A:ASP186 4.6 69.0 1.0 C A:ASP185 4.7 60.6 1.0 CB A:GLU252 4.7 54.8 1.0 O A:ASP185 4.9 63.0 1.0 SG A:CYS184 5.0 80.1 1.0

Calcium binding site 2 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1204 b:67.9 occ:1.00 OD2 A:ASP224 2.3 72.1 1.0 OD2 A:ASP225 2.3 87.7 1.0 OD1 A:ASP224 2.4 79.8 1.0 OD2 A:ASP186 2.4 75.7 1.0 CG A:ASP224 2.6 78.3 1.0 OD1 A:ASP225 2.7 85.6 1.0 CG A:ASP225 2.8 90.1 1.0 OD1 A:ASN247 2.8 71.0 1.0 CG A:ASP186 3.4 76.1 1.0 CB A:ASP186 3.5 69.0 1.0 CG A:ASN247 3.9 63.6 1.0 CB A:ASP224 4.1 78.3 1.0 CB A:ASP225 4.2 86.9 1.0 ND2 A:ASN247 4.3 63.9 1.0 N A:ASP225 4.4 75.9 1.0 SG A:CYS248 4.4 91.5 1.0 OD1 A:ASP186 4.5 75.3 1.0 NZ F:LYS262 4.7 61.6 1.0 CA A:ASP225 4.7 79.2 1.0 C A:ASP224 4.8 71.7 1.0 N A:ASN247 4.8 69.7 1.0 CA A:ASP224 4.9 71.4 1.0

Calcium binding site 3 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1205 b:61.9 occ:1.00 OD1 A:ASP293 2.5 65.4 1.0 OD1 A:ASP292 2.8 57.1 1.0 OE2 A:GLU359 3.1 64.5 1.0 CD A:GLU359 3.5 61.4 1.0 CG A:ASP293 3.6 58.6 1.0 CG A:ASP292 3.6 52.1 1.0 OD2 A:ASP292 3.8 57.1 1.0 CG A:GLU359 3.9 53.5 1.0 OD2 A:ASP293 4.1 60.8 1.0 OE1 A:GLU359 4.2 59.6 1.0 N A:ASP293 4.5 48.4 1.0 CB A:GLU359 4.5 43.1 1.0 CA A:ASP293 4.7 42.6 1.0 NZ D:LYS12 4.7 52.7 1.0 CB A:ASP293 4.8 45.6 1.0 C A:ASP292 4.9 44.7 1.0 CB A:ASP292 5.0 41.7 1.0

Calcium binding site 4 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1206 b:63.3 occ:1.00 OD1 A:ASP956 2.4 71.8 1.0 OE1 A:GLU1022 2.5 94.4 1.0 OD1 A:ASP955 2.7 64.7 1.0 CG A:ASP956 3.5 73.8 1.0 CD A:GLU1022 3.7 94.9 1.0 CG A:ASP955 3.8 68.3 1.0 CB A:GLU1022 4.0 84.6 1.0 OD2 A:ASP956 4.1 75.3 1.0 OD2 A:ASP955 4.2 77.2 1.0 NZ B:LYS811 4.3 81.0 1.0 N A:ASP956 4.4 73.6 1.0 CG A:GLU1022 4.4 89.4 1.0 CA A:ASP956 4.5 67.7 1.0 OE2 A:GLU1022 4.6 97.9 1.0 C A:ASP955 4.6 73.2 1.0 CB A:ASP956 4.6 70.9 1.0 O A:ASP955 4.6 69.9 1.0 CE A:LYS980 4.9 79.7 1.0

Calcium binding site 5 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1207 b:97.5 occ:1.00 O A:VAL996 2.3 71.8 1.0 OD2 A:ASP959 2.3 86.3 1.0 O A:SER957 2.7 59.9 1.0 C A:VAL996 3.2 70.0 1.0 CG A:ASP959 3.3 78.7 1.0 CA A:LYS997 3.4 81.6 1.0 CB A:SER957 3.4 69.7 1.0 OD1 A:ASP959 3.6 82.6 1.0 N A:LYS997 3.7 75.8 1.0 C A:SER957 3.7 58.6 1.0 N A:CYS998 3.9 91.3 1.0 C A:LYS997 4.1 92.5 1.0 CD A:LYS997 4.1 80.1 1.0 CA A:SER957 4.1 59.0 1.0 CA A:VAL996 4.5 73.4 1.0 CB A:LYS997 4.5 82.2 1.0 OG A:SER957 4.5 78.8 1.0 CB A:ASP959 4.5 69.7 1.0 N A:VAL996 4.6 74.5 1.0 OD2 A:ASP962 4.7 74.3 1.0 CG2 A:VAL996 4.8 82.4 1.0 CG A:LYS997 4.8 79.9 1.0 N A:ASP959 4.9 60.5 1.0 N A:TRP958 4.9 57.7 1.0 O A:CYS998 4.9 103.6 1.0

Calcium binding site 6 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1208 b:39.5 occ:1.00 O A:GLY294 2.3 43.4 1.0 O A:VAL333 2.4 52.3 1.0 OD2 A:ASP299 2.4 43.6 1.0 OD2 A:ASP296 3.1 55.6 1.0 OD1 A:ASP296 3.1 59.6 1.0 CG A:ASP299 3.2 43.4 1.0 CG A:ASP296 3.3 53.8 1.0 OD1 A:ASP299 3.4 53.0 1.0 C A:VAL333 3.4 44.8 1.0 C A:GLY294 3.6 38.0 1.0 CA A:SER334 3.8 42.9 1.0 N A:SER334 4.0 42.7 1.0 N A:ASP296 4.3 38.6 1.0 N A:CYS335 4.4 49.0 1.0 CA A:GLY294 4.4 38.3 1.0 C A:SER334 4.5 48.3 1.0 N A:TRP295 4.5 36.0 1.0 CA A:TRP295 4.5 35.0 1.0 CB A:ASP296 4.5 42.6 1.0 CA A:VAL333 4.6 37.8 1.0 CB A:ASP299 4.7 35.8 1.0 C A:TRP295 4.8 37.3 1.0 CB A:SER334 4.8 43.5 1.0 O A:CYS335 4.9 55.8 1.0 OG A:SER334 4.9 50.0 1.0 CB A:VAL333 5.0 37.4 1.0 N A:VAL333 5.0 40.1 1.0

Calcium binding site 7 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1202 b:71.1 occ:1.00 OD1 B:ASP752 2.3 77.3 1.0 OD2 B:ASP752 2.3 73.4 1.0 O B:MET786 2.4 89.7 1.0 CG B:ASP752 2.5 72.8 1.0 O B:SER747 2.9 70.8 1.0 OD1 B:ASP749 3.3 81.5 1.0 OD2 B:ASP749 3.5 87.5 1.0 C B:MET786 3.5 96.8 1.0 CG B:ASP749 3.6 84.3 1.0 CA B:LYS787 3.9 93.9 1.0 CB B:ASP752 3.9 71.3 1.0 N B:LYS787 4.1 94.5 1.0 C B:SER747 4.1 69.8 1.0 OG B:SER747 4.1 80.6 1.0 N B:ASP749 4.5 60.2 1.0 CB B:SER747 4.6 73.9 1.0 CA B:MET786 4.6 103.4 1.0 CG B:LYS787 4.7 108.5 1.0 CB B:MET786 4.8 103.1 1.0 CB B:ASP749 4.8 74.1 1.0 C B:LYS787 4.8 100.8 1.0 N B:CYS788 4.8 104.4 1.0 N B:ASP752 4.8 74.2 1.0 CA B:ASP752 4.8 75.0 1.0 CB B:LYS787 4.9 104.7 1.0 N B:MET786 5.0 95.7 1.0 CA B:TRP748 5.0 69.7 1.0 CA B:SER747 5.0 61.3 1.0

Calcium binding site 8 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1203 b:84.5 occ:1.00 OD1 B:ASP784 2.2 86.5 1.0 OD1 B:ASN807 2.2 88.2 1.0 OE2 B:GLU785 2.4 78.8 1.0 OD2 B:ASP784 2.7 88.2 1.0 CG B:ASP784 2.8 89.0 1.0 CG B:ASN807 3.2 90.8 1.0 CD B:GLU785 3.4 84.4 1.0 OD2 B:ASP746 3.4 82.6 1.0 ND2 B:ASN807 3.6 83.5 1.0 CG B:GLU785 4.0 84.2 1.0 CB B:ASP784 4.3 90.2 1.0 CG B:ASP746 4.3 77.0 1.0 CB B:ASP746 4.3 73.6 1.0 CB B:ASN807 4.5 90.4 1.0 OE1 B:GLU785 4.5 90.8 1.0 N B:ASN807 4.6 87.9 1.0 SG B:CYS808 4.7 92.4 1.0 C B:ASP784 5.0 87.1 1.0

Calcium binding site 9 out of 9 in the Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Dimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1204 b:77.5 occ:1.00 OD1 B:ASP746 2.2 74.2 1.0 OE2 B:GLU812 2.2 85.4 1.0 OD2 B:ASP745 2.3 78.7 1.0 OE1 A:GLU981 2.7 98.6 1.0 CD B:GLU812 2.9 84.1 1.0 CG B:ASP746 3.4 77.0 1.0 CG B:ASP745 3.5 74.0 1.0 CG B:GLU812 3.6 81.2 1.0 CD A:GLU981 3.6 99.4 1.0 OE1 B:GLU812 3.7 85.4 1.0 N B:ASP746 3.9 83.6 1.0 CA B:ASP746 3.9 76.9 1.0 OE2 A:GLU981 4.0 94.8 1.0 C B:ASP745 4.2 80.2 1.0 CB B:ASP746 4.2 73.6 1.0 OD2 B:ASP746 4.2 82.6 1.0 OD1 B:ASP745 4.3 76.1 1.0 CB B:ASP745 4.3 62.7 1.0 O B:ASP745 4.5 78.2 1.0 CA B:ASP745 4.8 71.5 1.0 CG A:GLU981 4.9 98.0 1.0

R.X.Zhou, M.K.Higgins. Scavenger Receptor CD163 Multimerises to Allow Uptake of Diverse Ligands To Be Published.