Calcium in PDB 9hek: Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex

The structure of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Calcium atom in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex (pdb code 9hek). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 19 binding sites of Calcium where determined in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex, PDB code: 9hek:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1203 b:72.6 occ:1.00 OE1 A:GLU1022 2.3 90.8 1.0 OD1 A:ASP955 2.8 88.4 1.0 OD1 A:ASP956 3.1 81.0 1.0 CD A:GLU1022 3.5 90.5 1.0 CG A:ASP955 3.7 85.1 1.0 OD2 A:ASP955 3.9 88.6 1.0 CG A:GLU1022 4.1 79.0 1.0 NZ B:LYS811 4.3 81.2 1.0 CG A:ASP956 4.3 82.3 1.0 CB A:GLU1022 4.3 70.3 1.0 OE1 A:GLU981 4.4 100.3 1.0 OE2 A:GLU1022 4.5 95.0 1.0 N A:ASP956 4.7 75.6 1.0 C A:ASP955 4.9 76.2 1.0 CA A:ASP956 5.0 77.5 1.0

Calcium binding site 2 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1204 b:57.1 occ:1.00 O A:MET786 2.3 69.9 1.0 OD2 A:ASP749 2.3 74.4 1.0 O A:SER747 2.7 67.3 1.0 OD2 A:ASP752 3.0 79.9 1.0 C A:MET786 3.3 68.5 1.0 OD1 A:ASP752 3.3 78.9 1.0 CG A:ASP749 3.5 74.5 1.0 CG A:ASP752 3.6 78.5 1.0 CA A:LYS787 3.6 80.1 1.0 N A:LYS787 3.8 73.9 1.0 C A:SER747 3.9 63.3 1.0 OG A:SER747 4.0 67.6 1.0 CB A:SER747 4.3 62.5 1.0 N A:CYS788 4.3 78.7 1.0 C A:LYS787 4.3 78.5 1.0 OD1 A:ASP749 4.3 78.3 1.0 N A:ASP749 4.4 53.7 1.0 CB A:ASP749 4.4 64.0 1.0 CA A:MET786 4.5 67.7 1.0 CB A:LYS787 4.6 84.5 1.0 CG A:LYS787 4.7 84.3 1.0 CA A:SER747 4.7 58.4 1.0 CB A:MET786 4.7 70.1 1.0 N A:TRP748 4.8 64.2 1.0 O A:CYS788 4.8 80.2 1.0 CA A:TRP748 4.9 58.1 1.0 CA A:ASP749 5.0 54.7 1.0

Calcium binding site 3 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1205 b:74.9 occ:1.00 O A:VAL996 2.3 91.1 1.0 O A:SER957 2.4 79.2 1.0 OD2 A:ASP962 2.6 85.4 1.0 OD1 A:ASP959 2.7 78.6 1.0 OD1 A:ASP962 3.1 93.0 1.0 CG A:ASP962 3.2 87.6 1.0 C A:VAL996 3.4 91.2 1.0 C A:SER957 3.6 69.6 1.0 CG A:ASP959 3.6 82.6 1.0 CA A:LYS997 3.8 97.3 1.0 OD2 A:ASP959 3.9 92.1 1.0 OD2 A:ASP961 3.9 99.8 1.0 N A:LYS997 4.0 97.3 1.0 CB A:SER957 4.1 78.0 1.0 CG2 A:VAL996 4.2 91.6 1.0 N A:CYS998 4.4 103.3 1.0 N A:ASP959 4.4 71.1 1.0 OD1 A:ASP961 4.4 87.6 1.0 CA A:SER957 4.5 70.0 1.0 CG A:ASP961 4.5 93.6 1.0 N A:TRP958 4.5 62.6 1.0 C A:LYS997 4.5 101.1 1.0 CA A:TRP958 4.5 65.4 1.0 CA A:VAL996 4.6 90.0 1.0 CB A:ASP962 4.7 81.9 1.0 C A:TRP958 4.9 67.2 1.0 N A:VAL996 4.9 91.1 1.0 CB A:LYS997 4.9 88.9 1.0 CB A:ASP959 5.0 76.9 1.0

Calcium binding site 4 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1206 b:57.6 occ:1.00 OE2 A:GLU785 2.3 74.0 1.0 OD2 A:ASP784 2.3 66.6 1.0 OD1 A:ASN807 2.3 59.2 1.0 OD2 A:ASP746 2.9 69.7 1.0 CG A:ASN807 3.1 55.4 1.0 ND2 A:ASN807 3.3 56.7 1.0 CG A:ASP784 3.4 68.8 1.0 CD A:GLU785 3.5 76.6 1.0 OD1 A:ASP784 3.8 69.6 1.0 CG A:ASP746 3.9 66.2 1.0 CG A:GLU785 4.2 74.4 1.0 CB A:ASP746 4.3 61.8 1.0 OE1 A:GLU785 4.4 74.0 1.0 CD C:LYS1021 4.5 60.5 1.0 CB A:ASN807 4.6 56.7 1.0 CB A:ASP784 4.7 64.6 1.0 CE C:LYS1021 4.8 64.8 1.0 SG A:CYS808 4.9 76.1 1.0 N A:ASN807 4.9 61.1 1.0

Calcium binding site 5 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1207 b:60.5 occ:1.00 OE1 A:GLU812 2.2 73.5 1.0 OD1 A:ASP746 2.4 66.7 1.0 OD1 A:ASP745 2.7 73.5 1.0 CD A:GLU812 3.5 80.7 1.0 CG A:ASP745 3.6 70.3 1.0 CG A:ASP746 3.7 66.2 1.0 OD2 A:ASP745 3.8 72.3 1.0 OE2 A:GLU812 4.3 84.6 1.0 N A:ASP746 4.3 66.7 1.0 CG A:GLU812 4.4 73.6 1.0 CA A:ASP746 4.4 61.4 1.0 OD2 A:ASP746 4.4 69.7 1.0 OE2 C:GLU981 4.5 109.2 1.0 C A:ASP745 4.5 64.8 1.0 CB A:ASP746 4.6 61.8 1.0 CE C:LYS1021 4.7 64.8 1.0 CB A:GLU812 4.7 66.2 1.0 O A:ASP745 4.7 63.6 1.0 CB A:ASP745 4.8 59.7 1.0 CG C:GLU981 5.0 87.6 1.0

Calcium binding site 6 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1208 b:114.5 occ:1.00 OE2 A:GLU252 2.3 118.6 1.0 OD1 A:ASP186 2.4 127.3 1.0 CD A:GLU252 3.5 114.7 1.0 CG A:ASP186 3.6 123.1 1.0 OD2 A:ASP185 3.7 120.7 1.0 NZ F:LYS262 3.7 114.7 1.0 OD1 A:ASP185 3.9 122.1 1.0 CE F:LYS262 4.1 110.6 1.0 CG A:ASP185 4.1 121.1 1.0 CG A:GLU252 4.3 105.0 1.0 OD2 A:ASP186 4.3 126.1 1.0 CD F:LYS262 4.4 99.8 1.0 OE1 A:GLU252 4.4 114.4 1.0 CA A:ASP186 4.5 121.0 1.0 N A:ASP186 4.6 110.9 1.0 CB A:ASP186 4.7 118.3 1.0 CB A:GLU252 4.9 105.4 1.0 C A:ASP185 4.9 110.4 1.0

Calcium binding site 7 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1209 b:120.2 occ:1.00 OD2 A:ASP225 2.3 135.5 1.0 OD1 A:ASN247 2.4 108.2 1.0 OD2 A:ASP186 2.4 126.1 1.0 OD1 A:ASP225 2.7 137.6 1.0 CG A:ASP225 2.8 138.3 1.0 OD2 A:ASP224 3.1 126.9 1.0 CG A:ASN247 3.4 105.2 1.0 CG A:ASP186 3.4 123.1 1.0 CB A:ASP186 3.7 118.3 1.0 ND2 A:ASN247 3.7 107.9 1.0 CG A:ASP224 3.9 130.5 1.0 CB A:ASP224 4.0 128.7 1.0 SG A:CYS248 4.2 126.1 1.0 CB A:ASP225 4.2 141.0 1.0 NZ F:LYS262 4.4 114.7 1.0 N A:ASP225 4.4 138.4 1.0 OD1 A:ASP186 4.5 127.3 1.0 N A:ASN247 4.6 109.6 1.0 CB A:ASN247 4.7 101.4 1.0 CA A:ASP225 4.8 141.4 1.0 C A:ASP224 4.9 132.1 1.0 OD1 A:ASP224 5.0 133.7 1.0

Calcium binding site 8 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1210 b:74.2 occ:1.00 OD1 A:ASP293 2.5 67.5 1.0 OD2 A:ASP292 3.0 75.1 1.0 CG A:ASP293 3.6 68.6 1.0 CG A:ASP292 3.8 68.5 1.0 OD1 A:ASP292 3.9 71.4 1.0 OE2 A:GLU359 3.9 83.9 1.0 CD A:GLU359 4.1 82.4 1.0 OD2 A:ASP293 4.2 78.4 1.0 NZ D:LYS12 4.3 72.3 1.0 OE1 A:GLU359 4.5 78.3 1.0 N A:ASP293 4.5 64.9 1.0 CG A:GLU359 4.6 75.4 1.0 CA A:ASP293 4.7 57.9 1.0 CB A:GLU359 4.8 68.8 1.0 CB A:ASP293 4.8 61.1 1.0

Calcium binding site 9 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1211 b:63.5 occ:1.00 O A:GLY294 2.3 61.8 1.0 OD2 A:ASP299 2.3 57.4 1.0 O A:VAL333 2.6 75.9 1.0 CG A:ASP299 3.3 67.8 1.0 OD1 A:ASP296 3.4 77.6 1.0 OD2 A:ASP296 3.4 76.7 1.0 OD1 A:ASP299 3.5 78.3 1.0 CG A:ASP296 3.5 73.2 1.0 C A:GLY294 3.6 57.4 1.0 C A:VAL333 3.7 64.1 1.0 CA A:SER334 3.9 61.9 1.0 N A:SER334 4.2 61.1 1.0 N A:ASP296 4.3 57.6 1.0 CA A:GLY294 4.4 51.4 1.0 CB A:ASP296 4.4 57.1 1.0 N A:TRP295 4.5 60.4 1.0 CA A:TRP295 4.6 63.1 1.0 N A:CYS335 4.6 68.5 1.0 CB A:ASP299 4.7 65.3 1.0 C A:SER334 4.7 67.9 1.0 C A:TRP295 4.8 59.5 1.0 CA A:VAL333 4.9 58.3 1.0 CB A:SER334 4.9 68.2 1.0 CA A:ASP296 5.0 51.2 1.0 O A:CYS335 5.0 83.5 1.0

Calcium binding site 10 out of 19 in the Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Trimeric CD163 Bound to Human Haptoglobin-Haemoglobin Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1202 b:68.0 occ:1.00 OE1 C:GLU1022 2.3 86.5 1.0 OD1 C:ASP956 3.0 84.3 1.0 OD1 C:ASP955 3.1 72.7 1.0 CD C:GLU1022 3.6 82.5 1.0 NZ A:LYS811 3.9 77.6 1.0 CB C:GLU1022 4.0 64.1 1.0 CG C:ASP955 4.2 70.6 1.0 CG C:ASP956 4.2 85.4 1.0 CG C:GLU1022 4.4 69.7 1.0 OE2 C:GLU1022 4.4 85.8 1.0 CA C:ASP956 4.5 77.8 1.0 O C:ASP955 4.5 76.0 1.0 N C:ASP956 4.6 70.2 1.0 C C:ASP955 4.6 70.6 1.0 OD2 C:ASP955 4.7 72.3 1.0 CB C:ASP956 5.0 81.5 1.0

R.X.Zhou, M.K.Higgins. Scavenger Receptor CD163 Multimerises to Allow Uptake of Diverse Ligands To Be Published.