Calcium in PDB 9hel: Unliganded Dimeric CD163 with Arm-Arm Contacts

The binding sites of Calcium atom in the Unliganded Dimeric CD163 with Arm-Arm Contacts (pdb code 9hel). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Unliganded Dimeric CD163 with Arm-Arm Contacts, PDB code: 9hel:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in the Unliganded Dimeric CD163 with Arm-Arm Contacts


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Unliganded Dimeric CD163 with Arm-Arm Contacts within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1203 b:83.8 occ:1.00 O A:GLY294 2.3 83.0 1.0 OD2 A:ASP299 2.3 80.4 1.0 O A:VAL333 2.3 83.9 1.0 OD2 A:ASP296 2.4 92.0 1.0 CG A:ASP299 3.1 79.1 1.0 OD1 A:ASP299 3.2 83.4 1.0 C A:VAL333 3.4 78.6 1.0 C A:GLY294 3.5 83.5 1.0 CG A:ASP296 3.5 88.5 1.0 CA A:SER334 3.7 76.3 1.0 N A:SER334 4.0 77.2 1.0 N A:ASP296 4.0 78.3 1.0 OD1 A:ASP296 4.2 86.3 1.0 CA A:TRP295 4.3 79.5 1.0 N A:TRP295 4.3 83.0 1.0 CB A:ASP299 4.5 73.2 1.0 N A:CYS335 4.5 80.9 1.0 CA A:GLY294 4.5 83.8 1.0 C A:SER334 4.5 81.2 1.0 CB A:ASP296 4.6 83.4 1.0 CA A:VAL333 4.6 71.1 1.0 C A:TRP295 4.6 80.0 1.0 CB A:SER334 4.7 80.6 1.0 CA A:ASP296 4.9 78.9 1.0 N A:VAL333 4.9 71.4 1.0 CB A:VAL333 4.9 67.4 1.0

Calcium binding site 2 out of 7 in the Unliganded Dimeric CD163 with Arm-Arm Contacts


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Unliganded Dimeric CD163 with Arm-Arm Contacts within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1204 b:75.2 occ:1.00 OE1 A:GLU1022 2.2 101.2 1.0 OD1 A:ASP955 2.4 92.5 1.0 OD1 A:ASP956 2.9 95.5 1.0 CG A:ASP955 3.3 92.0 1.0 CD A:GLU1022 3.5 100.6 1.0 OD2 A:ASP955 3.5 93.8 1.0 NZ B:LYS811 4.0 100.8 1.0 CG A:ASP956 4.1 96.6 1.0 CG A:GLU1022 4.2 94.5 1.0 OE2 A:GLU1022 4.4 102.2 1.0 N A:ASP956 4.5 87.2 1.0 OE1 B:GLU812 4.6 102.5 1.0 CB A:ASP955 4.6 88.5 1.0 CB A:GLU1022 4.6 89.0 1.0 C A:ASP955 4.7 90.1 1.0 CA A:ASP956 4.8 88.7 1.0 OD2 A:ASP956 4.8 99.9 1.0 O A:ASP955 4.9 95.0 1.0 CE B:LYS811 5.0 103.9 1.0

Calcium binding site 3 out of 7 in the Unliganded Dimeric CD163 with Arm-Arm Contacts


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Unliganded Dimeric CD163 with Arm-Arm Contacts within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1205 b:98.7 occ:1.00 OD2 A:ASP962 2.3 102.5 1.0 O A:VAL996 2.4 105.5 1.0 OD1 A:ASP962 2.6 104.2 1.0 OD1 A:ASP959 2.8 103.0 1.0 CG A:ASP962 2.8 103.7 1.0 O A:SER957 3.1 97.7 1.0 OG A:SER957 3.2 104.0 1.0 C A:VAL996 3.4 105.7 1.0 CA A:LYS997 3.4 107.6 1.0 CG A:ASP959 3.5 103.8 1.0 OD2 A:ASP959 3.5 106.3 1.0 N A:LYS997 3.8 107.0 1.0 N A:CYS998 4.0 109.8 1.0 C A:LYS997 4.1 111.3 1.0 CB A:ASP962 4.3 103.2 1.0 C A:SER957 4.3 93.4 1.0 CB A:LYS997 4.5 106.4 1.0 CG1 A:VAL996 4.5 96.7 1.0 CB A:SER957 4.6 96.9 1.0 CA A:VAL996 4.7 101.2 1.0 O A:CYS998 4.7 121.8 1.0 N A:ASP959 4.7 96.1 1.0 N A:ASP962 4.8 104.3 1.0 CB A:ASP959 4.9 100.7 1.0 CG A:LYS997 4.9 103.5 1.0 CB A:VAL996 5.0 98.9 1.0

Calcium binding site 4 out of 7 in the Unliganded Dimeric CD163 with Arm-Arm Contacts


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Unliganded Dimeric CD163 with Arm-Arm Contacts within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1202 b:89.9 occ:1.00 O B:GLY294 2.3 86.1 1.0 O B:VAL333 2.4 101.0 1.0 OD2 B:ASP296 3.0 98.2 1.0 OD2 B:ASP299 3.1 84.1 1.0 OD1 B:ASP299 3.2 95.9 1.0 C B:VAL333 3.5 97.7 1.0 CG B:ASP299 3.5 88.0 1.0 C B:GLY294 3.5 87.8 1.0 CA B:SER334 3.5 98.9 1.0 N B:SER334 3.9 96.7 1.0 CA B:GLY294 4.0 86.5 1.0 CG B:ASP296 4.1 94.8 1.0 C B:SER334 4.3 104.0 1.0 N B:CYS335 4.4 105.5 1.0 OG B:SER334 4.4 100.3 1.0 N B:ASP296 4.4 86.4 1.0 CB B:SER334 4.5 101.4 1.0 CB B:ASP296 4.5 90.6 1.0 N B:TRP295 4.6 90.4 1.0 CA B:VAL333 4.8 97.1 1.0 CG1 B:VAL333 4.8 95.2 1.0 O B:CYS335 4.9 109.9 1.0 CA B:TRP295 4.9 87.5 1.0 CB B:ASP299 4.9 83.1 1.0

Calcium binding site 5 out of 7 in the Unliganded Dimeric CD163 with Arm-Arm Contacts


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Unliganded Dimeric CD163 with Arm-Arm Contacts within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1203 b:88.9 occ:1.00 O B:MET786 2.3 99.1 1.0 OD1 B:ASP749 2.3 91.4 1.0 OD2 B:ASP752 2.5 92.8 1.0 O B:SER747 2.6 94.1 1.0 OD1 B:ASP752 2.9 96.9 1.0 CG B:ASP752 3.1 91.9 1.0 C B:MET786 3.2 96.6 1.0 CG B:ASP749 3.5 90.1 1.0 CB B:MET786 3.6 95.2 1.0 C B:SER747 3.7 90.5 1.0 N B:LYS787 3.9 94.3 1.0 CA B:MET786 4.0 96.2 1.0 CA B:LYS787 4.1 98.7 1.0 OD2 B:ASP749 4.2 91.1 1.0 N B:ASP749 4.2 85.1 1.0 CB B:SER747 4.3 87.8 1.0 CA B:SER747 4.5 84.6 1.0 N B:CYS788 4.5 100.1 1.0 N B:TRP748 4.6 88.9 1.0 CB B:ASP752 4.6 84.9 1.0 CB B:ASP749 4.6 84.7 1.0 N B:MET786 4.6 98.0 1.0 CA B:TRP748 4.7 83.2 1.0 C B:LYS787 4.8 101.5 1.0 OG B:SER747 4.8 94.3 1.0 C B:TRP748 4.9 81.8 1.0 CA B:ASP749 5.0 81.2 1.0

Calcium binding site 6 out of 7 in the Unliganded Dimeric CD163 with Arm-Arm Contacts


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Unliganded Dimeric CD163 with Arm-Arm Contacts within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1204 b:101.6 occ:1.00 OD2 B:ASP784 2.3 105.2 1.0 OD1 B:ASN807 2.6 101.5 1.0 OD1 B:ASP784 2.7 101.2 1.0 OD2 B:ASP746 2.7 98.9 1.0 CG B:ASP784 2.8 101.8 1.0 CG B:ASN807 3.5 96.9 1.0 ND2 B:ASN807 3.6 96.3 1.0 CG B:ASP746 3.7 95.9 1.0 CB B:ASP746 3.9 90.0 1.0 SG B:CYS808 4.2 111.3 1.0 OE2 B:GLU785 4.3 108.5 1.0 CG B:GLU785 4.3 104.7 1.0 CB B:ASP784 4.3 99.0 1.0 CD B:GLU785 4.8 109.1 1.0 OD1 B:ASP746 4.8 97.6 1.0 SG B:CYS744 4.9 115.8 1.0 CB B:ASN807 4.9 91.8 1.0 CD A:LYS1021 4.9 93.5 1.0

Calcium binding site 7 out of 7 in the Unliganded Dimeric CD163 with Arm-Arm Contacts


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Unliganded Dimeric CD163 with Arm-Arm Contacts within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1205 b:83.1 occ:1.00 OD1 B:ASP746 2.4 97.6 1.0 OE2 B:GLU812 2.8 100.8 1.0 OE2 A:GLU981 3.0 103.9 1.0 CD B:GLU812 3.3 100.3 1.0 OE1 B:GLU812 3.5 102.5 1.0 CG B:ASP746 3.6 95.9 1.0 CB B:ASP745 3.9 92.2 1.0 NZ A:LYS1021 4.1 94.8 1.0 CG B:ASP745 4.2 98.3 1.0 N B:ASP746 4.2 89.9 1.0 OD2 B:ASP745 4.2 101.6 1.0 CG B:GLU812 4.2 95.5 1.0 CD A:GLU981 4.3 103.3 1.0 CB B:GLU812 4.3 89.6 1.0 OD2 B:ASP746 4.4 98.9 1.0 CA B:ASP746 4.6 87.8 1.0 C B:ASP745 4.6 89.4 1.0 CB B:ASP746 4.6 90.0 1.0 CA B:ASP745 4.8 88.3 1.0 OD1 B:ASP745 4.8 98.7 1.0 CE A:LYS1021 4.9 94.1 1.0 OE1 A:GLU981 5.0 104.4 1.0

R.X.Zhou, M.K.Higgins. Scavenger Receptor CD163 Multimerises to Allow Uptake of Diverse Ligands To Be Published.