Calcium in PDB 9ic1: Chimeric Mitochondrial Dna Polymerase Gamma Ternary Complex (Hamb) in Replication Conformer

All present enzymatic activity of Chimeric Mitochondrial Dna Polymerase Gamma Ternary Complex (Hamb) in Replication Conformer:
2.7.7.7;

The binding sites of Calcium atom in the Chimeric Mitochondrial Dna Polymerase Gamma Ternary Complex (Hamb) in Replication Conformer (pdb code 9ic1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Chimeric Mitochondrial Dna Polymerase Gamma Ternary Complex (Hamb) in Replication Conformer, PDB code: 9ic1:

Calcium binding site 1 out of 1 in the Chimeric Mitochondrial Dna Polymerase Gamma Ternary Complex (Hamb) in Replication Conformer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Chimeric Mitochondrial Dna Polymerase Gamma Ternary Complex (Hamb) in Replication Conformer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:72.6 occ:1.00 O2G A:DCP1302 2.2 76.5 1.0 O1A A:DCP1302 2.2 68.8 1.0 OD2 A:ASP1135 2.3 53.3 1.0 OD1 A:ASP890 2.3 57.6 1.0 O A:VAL891 2.4 49.2 1.0 O1B A:DCP1302 2.4 75.3 1.0 OD2 A:ASP890 2.9 55.5 1.0 CG A:ASP890 2.9 53.1 1.0 PG A:DCP1302 3.4 83.7 1.0 O3B A:DCP1302 3.4 79.6 1.0 CG A:ASP1135 3.4 50.4 1.0 PB A:DCP1302 3.4 86.6 1.0 C A:VAL891 3.5 52.0 1.0 PA A:DCP1302 3.6 78.7 1.0 OD1 A:ASP1135 3.9 50.3 1.0 N A:VAL891 4.0 42.3 1.0 O3A A:DCP1302 4.0 74.7 1.0 CA A:VAL891 4.3 44.8 1.0 CB A:ASP890 4.3 49.8 1.0 O3G A:DCP1302 4.3 75.3 1.0 O1G A:DCP1302 4.4 77.8 1.0 C5' A:DCP1302 4.4 76.8 1.0 C A:ASP890 4.5 50.3 1.0 N A:ASP892 4.5 50.6 1.0 O5' A:DCP1302 4.6 82.8 1.0 CB A:ASP1135 4.6 45.1 1.0 N A:SER893 4.7 60.4 1.0 CA A:ASP892 4.7 47.9 1.0 O2A A:DCP1302 4.7 75.6 1.0 CB A:VAL891 4.8 45.1 1.0 O2B A:DCP1302 4.8 73.5 1.0 CA A:ASP890 4.9 43.6 1.0

S.Corra, A.Zuppardo, S.Valenzuela, L.Jenninger, R.Cerutti, S.Sillamaa, E.Hoberg, K.A.S.Johansson, U.Rovsnik, S.Volta, P.Silva-Pinheiro, H.Davis, A.Trifunovic, M.Minczuk, C.M.Gustafsson, A.Suomalainen, M.Zeviani, B.Macao, X.Zhu, M.Falkenberg, C.Viscomi. Modelling Polg Mutations in Mice Unravels A Critical Role of Pol Gamma Beta in Regulating Phenotypic Severity. Nat Commun V. 16 4782 2025.
ISSN: ESSN 2041-1723
PubMed: 40404629
DOI: 10.1038/S41467-025-60059-Y