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Calcium in PDB 9jmy: Crystal Structure of Ired in Complex with Nadph

Protein crystallography data

The structure of Crystal Structure of Ired in Complex with Nadph, PDB code: 9jmy was solved by X.L.Fu, M.T.Zhang, S.M.Yi, K.X.Dai, Y.Y.Yang, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.88 / 2.15
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 75.831, 75.831, 157.008, 90, 90, 120
R / Rfree (%) 17.4 / 24.3

Other elements in 9jmy:

The structure of Crystal Structure of Ired in Complex with Nadph also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Ired in Complex with Nadph (pdb code 9jmy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Ired in Complex with Nadph, PDB code: 9jmy:

Calcium binding site 1 out of 1 in 9jmy

Go back to Calcium Binding Sites List in 9jmy
Calcium binding site 1 out of 1 in the Crystal Structure of Ired in Complex with Nadph


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Ired in Complex with Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca305

b:46.5
occ:0.50
O A:GLU127 2.2 22.5 1.0
O A:HOH413 2.5 16.0 1.0
C A:GLU127 3.4 22.3 1.0
CL A:CL304 3.9 64.9 1.0
CA A:GLU127 4.1 23.4 1.0
OE2 A:GLU127 4.3 26.9 1.0
O A:SER129 4.4 21.0 1.0
N A:ALA128 4.4 20.6 1.0
CB A:ARG152 4.6 22.5 1.0
CB A:GLU127 4.7 23.1 1.0
CA A:ALA128 4.8 22.5 1.0
C A:ALA128 4.9 21.1 1.0

Reference:

X.L.Fu, M.T.Zhang, S.M.Yi, K.X.Dai, Y.Y.Yang, C.-C.Chen, R.-T.Guo. Crystal Structure of Ired in Complex with Nadph To Be Published.
Page generated: Mon Aug 4 18:53:16 2025

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