Calcium in PDB 9jpu: Cryoem Structure of Mouse Rag Sec-Phd

All present enzymatic activity of Cryoem Structure of Mouse Rag Sec-Phd:
2.3.2.27;

The structure of Cryoem Structure of Mouse Rag Sec-Phd also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Calcium atom in the Cryoem Structure of Mouse Rag Sec-Phd (pdb code 9jpu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryoem Structure of Mouse Rag Sec-Phd, PDB code: 9jpu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryoem Structure of Mouse Rag Sec-Phd


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryoem Structure of Mouse Rag Sec-Phd within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:61.1 occ:1.00 O3' F:DG30 2.5 69.3 1.0 OD1 A:ASP600 2.6 72.4 1.0 CG A:ASP600 3.4 72.4 1.0 OE2 A:GLU962 3.4 71.2 1.0 OD2 A:ASP600 3.4 72.4 1.0 O A:GLY601 3.5 69.3 1.0 C3' F:DG30 3.9 69.3 1.0 OE1 A:GLU962 4.0 71.2 1.0 CD A:GLU962 4.1 71.2 1.0 C A:GLY601 4.4 69.3 1.0 N A:GLY601 4.5 69.3 1.0 C4' F:DG30 4.6 69.3 1.0 ND2 A:ASN965 4.7 69.2 1.0 OP1 F:DG30 4.8 69.3 1.0 C2' F:DG30 4.8 69.3 1.0 CB A:ASP600 4.8 72.4 1.0

Calcium binding site 2 out of 2 in the Cryoem Structure of Mouse Rag Sec-Phd


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryoem Structure of Mouse Rag Sec-Phd within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1101 b:64.1 occ:1.00 OD1 C:ASP600 2.5 69.5 1.0 O3' G:DG41 2.6 67.9 1.0 OE2 C:GLU962 2.7 70.6 1.0 OD2 C:ASP600 2.9 69.5 1.0 CG C:ASP600 3.1 69.5 1.0 CD C:GLU962 3.6 70.6 1.0 OE1 C:GLU962 3.7 70.6 1.0 C3' G:DG41 3.9 67.9 1.0 O C:GLY601 4.0 66.9 1.0 C4' G:DG41 4.5 67.9 1.0 CB C:ASP600 4.6 69.5 1.0 N C:GLY601 4.7 66.9 1.0 C C:GLY601 4.7 66.9 1.0 C2' G:DG41 4.8 67.9 1.0 NE2 C:HIS795 4.8 71.1 1.0 CG C:GLU962 5.0 70.6 1.0

X.Chen, L.Yao, W.Yang, M.Gellert. Cryoem Structure of Mouse Rag Sec-Phd To Be Published.