Calcium in PDB 9jpx: Cryoem Structure of Mouse Rag Sec-0

All present enzymatic activity of Cryoem Structure of Mouse Rag Sec-0:
2.3.2.27;

The structure of Cryoem Structure of Mouse Rag Sec-0 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Cryoem Structure of Mouse Rag Sec-0 (pdb code 9jpx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryoem Structure of Mouse Rag Sec-0, PDB code: 9jpx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryoem Structure of Mouse Rag Sec-0


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryoem Structure of Mouse Rag Sec-0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:63.0 occ:1.00 OD1 A:ASP600 2.6 65.2 1.0 O3' F:DG30 2.7 60.8 1.0 OE2 A:GLU962 2.9 64.4 1.0 CG A:ASP600 3.4 65.2 1.0 OD2 A:ASP600 3.4 65.2 1.0 OE1 A:GLU962 3.5 64.4 1.0 CD A:GLU962 3.6 64.4 1.0 O A:GLY601 3.7 62.1 1.0 C3' F:DG30 3.9 60.8 1.0 C4' F:DG30 4.4 60.8 1.0 C2' F:DG30 4.4 60.8 1.0 OP1 F:DG30 4.5 60.8 1.0 C A:GLY601 4.5 62.1 1.0 N A:GLY601 4.6 62.1 1.0 ND2 A:ASN965 4.7 61.5 1.0 CB A:ASP600 4.9 65.2 1.0

Calcium binding site 2 out of 2 in the Cryoem Structure of Mouse Rag Sec-0


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryoem Structure of Mouse Rag Sec-0 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1101 b:63.2 occ:1.00 OD1 C:ASP600 2.5 65.7 1.0 O3' G:DG41 2.5 61.1 1.0 OE2 C:GLU962 2.9 64.2 1.0 CG C:ASP600 3.4 65.7 1.0 OD2 C:ASP600 3.5 65.7 1.0 OE1 C:GLU962 3.6 64.2 1.0 CD C:GLU962 3.6 64.2 1.0 O C:GLY601 3.8 62.2 1.0 C3' G:DG41 3.9 61.1 1.0 C4' G:DG41 4.4 61.1 1.0 C2' G:DG41 4.6 61.1 1.0 C C:GLY601 4.6 62.2 1.0 N C:GLY601 4.6 62.2 1.0 CB C:ASP600 4.8 65.7 1.0 ND2 C:ASN965 4.8 60.8 1.0 NE2 C:HIS795 4.8 62.7 1.0 O5' G:DG41 4.9 61.1 1.0

X.Chen, L.Yao, W.Yang, M.Gellert. Cryoem Structure of Mouse Rag Sec-0 To Be Published.