Calcium in PDB 9jqn: Cryoem Structure of Mouse Rag Sec-2DNA

All present enzymatic activity of Cryoem Structure of Mouse Rag Sec-2DNA:
2.3.2.27;

The structure of Cryoem Structure of Mouse Rag Sec-2DNA also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Cryoem Structure of Mouse Rag Sec-2DNA (pdb code 9jqn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryoem Structure of Mouse Rag Sec-2DNA, PDB code: 9jqn:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryoem Structure of Mouse Rag Sec-2DNA


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryoem Structure of Mouse Rag Sec-2DNA within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:54.5 occ:1.00 OD2 A:ASP600 2.5 56.7 1.0 OD1 A:ASP600 2.6 56.7 1.0 O3' F:DG30 2.9 52.7 1.0 CG A:ASP600 2.9 56.7 1.0 O A:GLY601 3.6 53.3 1.0 OE1 A:GLU962 4.0 57.0 1.0 O3' J:DG16 4.0 66.4 0.8 C3' F:DG30 4.2 52.7 1.0 OE2 A:GLU962 4.3 57.0 1.0 CB A:ASP600 4.5 56.7 1.0 CD A:GLU962 4.5 57.0 1.0 C2' F:DG30 4.6 52.7 1.0 OP1 F:DG30 4.7 52.7 1.0 ND2 A:ASN965 4.8 54.6 1.0 NE2 A:HIS795 4.8 54.5 1.0 C4' F:DG30 4.8 52.7 1.0 C A:GLY601 4.8 53.3 1.0 OD2 A:ASP708 4.9 58.1 1.0

Calcium binding site 2 out of 2 in the Cryoem Structure of Mouse Rag Sec-2DNA


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryoem Structure of Mouse Rag Sec-2DNA within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1101 b:54.2 occ:1.00 OD1 C:ASP600 2.5 53.7 1.0 OD2 C:ASP600 2.6 53.7 1.0 O3' G:DG41 2.8 52.0 1.0 CG C:ASP600 2.9 53.7 1.0 OE2 C:GLU962 3.3 54.9 1.0 O C:GLY601 3.4 50.6 1.0 CD C:GLU962 4.1 54.9 1.0 OE1 C:GLU962 4.1 54.9 1.0 C3' G:DG41 4.2 52.0 1.0 O3' I:DG16 4.2 66.8 0.8 CB C:ASP600 4.4 53.7 1.0 C C:GLY601 4.6 50.6 1.0 C4' G:DG41 4.8 52.0 1.0 NE2 C:HIS795 4.8 53.2 1.0 C2' G:DG41 4.8 52.0 1.0 OD2 C:ASP708 4.9 57.5 1.0 ND2 C:ASN965 4.9 52.3 1.0 N C:GLY601 5.0 50.6 1.0

X.Chen, L.Yao, W.Yang, M.Gellert. Cryoem Structure of Mouse Rag Sec-12/23DNA To Be Published.