Calcium in PDB 9jts: Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side)

All present enzymatic activity of Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side):
2.3.2.27;

The structure of Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side) (pdb code 9jts). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side), PDB code: 9jts:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:44.0 occ:1.00 OD2 A:ASP600 2.4 57.1 1.0 OD1 A:ASP600 2.6 57.1 1.0 CG A:ASP600 2.8 57.1 1.0 O3' F:DG30 3.0 57.2 1.0 O3' I:DG16 3.4 73.1 0.8 O A:GLY601 3.7 57.0 1.0 OE2 A:GLU962 4.2 59.0 1.0 OD2 A:ASP708 4.3 62.1 1.0 CB A:ASP600 4.4 57.1 1.0 C3' F:DG30 4.4 57.2 1.0 NE2 A:HIS795 4.5 59.6 1.0 OE1 A:GLU962 4.5 59.0 1.0 CE1 A:HIS795 4.8 59.6 1.0 CD A:GLU962 4.8 59.0 1.0 C3' I:DG16 4.8 73.1 0.8 C A:GLY601 4.9 57.0 1.0 C2' F:DG30 5.0 57.2 1.0

Calcium binding site 2 out of 2 in the Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryoem Structure of Mouse Rag Sec-1DNA (12RSS Side) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1101 b:65.5 occ:1.00 OD2 C:ASP600 2.5 55.5 1.0 OD1 C:ASP600 2.9 55.5 1.0 CG C:ASP600 3.0 55.5 1.0 O3' G:DG41 3.1 52.0 1.0 O C:GLY601 3.1 54.1 1.0 OE2 C:GLU962 3.9 53.6 1.0 OE1 C:GLU962 4.2 53.6 1.0 C3' G:DG41 4.3 52.0 1.0 C C:GLY601 4.3 54.1 1.0 CB C:ASP600 4.4 55.5 1.0 C4' G:DG41 4.4 52.0 1.0 CD C:GLU962 4.5 53.6 1.0 O5' G:DG41 4.7 52.0 1.0 ND2 C:ASN965 4.8 52.4 1.0 N C:GLY601 4.9 54.1 1.0 OD2 C:ASP708 5.0 62.4 1.0

X.Chen, L.Yao, W.Yang, M.Gellert. Cryoem Structure of Mouse Rag Sec-12DNA To Be Published.